protected override void Context()
{
base.Context();
_eventGroupBuilder1 = new EventGroupBuilder().WithName("EG1");
_eventGroupBuilder2 = new EventGroupBuilder().WithName("EG2");
_eventBuildingBlockCreator = new EventGroupBuildingBlock {
_eventGroupBuilder1, _eventGroupBuilder2
};
_startTime1 = DomainHelperForSpecs.ConstantParameterWithValue().WithName(Constants.Parameters.START_TIME);
_startTime2 = DomainHelperForSpecs.ConstantParameterWithValue().WithName(Constants.Parameters.START_TIME);
_dose = DomainHelperForSpecs.ConstantParameterWithValue().WithName(CoreConstants.Parameters.DOSE);
_dosePerBodyWeight = DomainHelperForSpecs.ConstantParameterWithValue().WithName(CoreConstants.Parameters.DOSE_PER_BODY_WEIGHT);
_p1 = DomainHelperForSpecs.ConstantParameterWithValue().WithName("P1");
_p2 = DomainHelperForSpecs.ConstantParameterWithValue().WithName("P2");
_eventBuilder1 = new EventBuilder().WithName("E1");
_eventBuilder2 = new EventBuilder().WithName("E2");
_eventGroupBuilder1.Add(_eventBuilder1);
_eventGroupBuilder2.Add(_eventBuilder2);
_eventBuilder1.Add(_startTime1);
_eventBuilder1.Add(_p1);
_eventBuilder2.Add(_startTime2);
_eventBuilder1.Add(_dosePerBodyWeight);
_eventBuilder2.Add(_dose);
_eventBuilder2.Add(_p2);
}
private void addApplication(IEventGroupBuilder protocolGroupBuilder, ISchemaItem schemaItem, string applicationName, CompoundProperties compoundProperties, Protocol protocol)
{
IContainer applicationParentContainer;
string formulationType;
IEnumerable <IParameter> formulationParameters;
if (schemaItem.NeedsFormulation)
{
var formulation = _formulationFromMappingRetriever.FormulationUsedBy(_simulation, compoundProperties.ProtocolProperties.MappingWith(schemaItem.FormulationKey));
if (formulation == null)
{
throw new NoFormulationFoundForRouteException(protocol, schemaItem.ApplicationType);
}
//check if used formulation container is already created and create if needed
if (protocolGroupBuilder.ContainsName(formulation.Name))
{
applicationParentContainer = protocolGroupBuilder.GetSingleChildByName <IEventGroupBuilder>(formulation.Name);
}
else
{
applicationParentContainer = createFormulationAsEventGroupBuilderFrom(formulation);
}
protocolGroupBuilder.Add(applicationParentContainer);
formulationType = formulation.FormulationType;
formulationParameters = applicationParentContainer.GetChildren <IParameter>();
}
else
{
applicationParentContainer = protocolGroupBuilder;
formulationType = CoreConstants.Formulation.EmptyFormulation;
formulationParameters = new List <IParameter>();
}
applicationParentContainer.Add(
_applicationFactory.CreateFor(schemaItem, formulationType, applicationName, compoundProperties.Compound.Name, formulationParameters, _eventGroupBuildingBlock.FormulaCache));
}
protected override void Context()
{
base.Context();
_eventGroupBuildingBlock = new EventGroupBuildingBlock();
var eventGroup = new EventGroupBuilder().WithName("EG");
_eventGroupBuildingBlock.Add(eventGroup);
var ehcStartEvent = new EventBuilder().WithName(Converter321To331.EHCStartEvent);
eventGroup.Add(ehcStartEvent);
var eabOldStart = new EventAssignmentBuilder().WithName("EAB1").WithFormula(new ExplicitFormula("ln(2) / EHC_Halftime * M * EHC_EjectionFraction"));
eabOldStart.UseAsValue = false;
eabOldStart.ObjectPath = new ObjectPath(new[] { "Organism", "Gallbladder", "Gallbladder emptying rate" });
ehcStartEvent.AddAssignment(eabOldStart);
var assignmentBuilder = new EventAssignmentBuilder().WithName("EAB2").WithFormula(new ExplicitFormula("DontChange"));
assignmentBuilder.ObjectPath = new ObjectPath(new[] { "PATH" });
ehcStartEvent.AddAssignment(assignmentBuilder);
var ehcStopEvent = new EventBuilder().WithName(Converter321To331.EHCStopEvent);
var eabOldStop = new EventAssignmentBuilder().WithName("EAB1").WithFormula(new ConstantFormula(0));
eabOldStop.UseAsValue = false;
eabOldStop.ObjectPath = new ObjectPath(new[] { "Organism", "Gallbladder", "Gallbladder emptying rate" });
ehcStopEvent.AddAssignment(eabOldStop);
assignmentBuilder = new EventAssignmentBuilder().WithName("EAB2").WithFormula(new ExplicitFormula("DontChange"));
assignmentBuilder.ObjectPath = new ObjectPath(new[] { "PATH" });
ehcStopEvent.AddAssignment(assignmentBuilder);
eventGroup.Add(ehcStopEvent);
var protocolSchemaItem = new Container().WithName("ProtocolSchemaItem").WithParentContainer(eventGroup);
_drugMassParameter = new Parameter().WithName("DrugMass").WithParentContainer(protocolSchemaItem).WithValue(1);
applications = new EventGroupBuilder().WithName("Applications");
applications.Add(new Parameter().WithName("TotalDrugMass"));
_eventGroupBuildingBlock.Add(applications);
}
protected override void AddTo(TChild child, IEventGroupBuilder parent, IMoBiContext context)
{
parent.Add(child);
}