public ImporterPresenter(
IImporterView view,
IDataSetToDataRepositoryMapper dataRepositoryMapper,
IImporter importer,
INanPresenter nanPresenter,
IImporterDataPresenter importerDataPresenter,
IImportConfirmationPresenter confirmationPresenter,
IColumnMappingPresenter columnMappingPresenter,
ISourceFilePresenter sourceFilePresenter,
IDialogCreator dialogCreator,
IPKMLPersistor pkmlPersistor) : base(view)
{
_importerDataPresenter = importerDataPresenter;
_confirmationPresenter = confirmationPresenter;
_columnMappingPresenter = columnMappingPresenter;
_nanPresenter = nanPresenter;
_sourceFilePresenter = sourceFilePresenter;
_dataRepositoryMapper = dataRepositoryMapper;
_dataSource = new DataSource(importer);
_pkmlPersistor = pkmlPersistor;
_importer = importer;
_dialogCreator = dialogCreator;
_sourceFilePresenter.Title = Captions.Importer.PleaseSelectDataFile;
_sourceFilePresenter.Filter = Captions.Importer.ImportFileFilter;
_sourceFilePresenter.DirectoryKey = Constants.DirectoryKey.OBSERVED_DATA;
_sourceFilePresenter.OnSourceFileChanged += (s, e) => SetDataSource(e.FileName);
_sourceFilePresenter.CheckBeforeSelectFile = () =>
!_dataSource.DataSets.Any() || dialogCreator.MessageBoxYesNo(Captions.Importer.OpenFileConfirmation) == ViewResult.Yes;
_view.AddColumnMappingControl(columnMappingPresenter.View);
_view.AddSourceFileControl(sourceFilePresenter.View);
_view.AddNanView(nanPresenter.View);
_confirmationPresenter.OnImportData += ImportData;
_confirmationPresenter.OnDataSetSelected += plotDataSet;
_confirmationPresenter.OnNamingConventionChanged += (s, a) =>
{
_dataSource.SetNamingConvention(a.NamingConvention);
_confirmationPresenter.SetDataSetNames(_dataSource.NamesFromConvention());
_configuration.NamingConventions = a.NamingConvention;
};
_importerDataPresenter.OnImportSheets += loadSheetsFromDataPresenter;
_nanPresenter.OnNaNSettingsChanged += (s, a) =>
{
_columnMappingPresenter.ValidateMapping();
_configuration.NanSettings = _nanPresenter.Settings;
};
_view.AddConfirmationView(_confirmationPresenter.View);
_view.AddImporterView(_importerDataPresenter.View);
AddSubPresenters(_importerDataPresenter, _confirmationPresenter, _columnMappingPresenter, _sourceFilePresenter);
_importerDataPresenter.OnFormatChanged += onFormatChanged;
_importerDataPresenter.OnTabChanged += onTabChanged;
_importerDataPresenter.OnDataChanged += onImporterDataChanged;
_columnMappingPresenter.OnMissingMapping += onMissingMapping;
_columnMappingPresenter.OnMappingCompleted += onCompletedMapping;
View.DisableConfirmationView();
}
public ImporterPresenterForTest(
IImporterView view,
IDataSetToDataRepositoryMapper dataRepositoryMapper,
IImporter importer,
INanPresenter nanPresenter,
IImporterDataPresenter importerDataPresenter,
IImportConfirmationPresenter confirmationPresenter,
IColumnMappingPresenter columnMappingPresenter,
ISourceFilePresenter sourceFilePresenter,
IDialogCreator dialogCreator,
IPKMLPersistor pkmlPersistor,
IDataSource dataSource
) : base(view, dataRepositoryMapper, importer, nanPresenter, importerDataPresenter, confirmationPresenter, columnMappingPresenter,
sourceFilePresenter, dialogCreator, pkmlPersistor)
{
_dataSource = dataSource;
}
public override void GlobalContext()
{
base.GlobalContext();
_fakedTimeDimension = A.Fake <IDimension>();
_fakedConcentrationDimension = A.Fake <IDimension>();
_fakedErrorDimension = A.Fake <IDimension>();
_fakedDimensionFactory = A.Fake <IDimensionFactory>();
_basicFormat = A.Fake <DataSheet>();
_container = A.Fake <IContainer>();
_dialogCreator = A.Fake <IDialogCreator>();
var dataFormat = A.Fake <IDataFormat>();
_columnInfos = new ColumnInfoCache
{
new ColumnInfo()
{
DisplayName = "Time"
},
new ColumnInfo()
{
DisplayName = "Concentration"
},
new ColumnInfo()
{
DisplayName = "Error"
}
};
_columnInfos["Time"].SupportedDimensions.Add(_fakedTimeDimension);
_columnInfos["Concentration"].SupportedDimensions.Add(_fakedConcentrationDimension);
_columnInfos["Error"].SupportedDimensions.Add(_fakedErrorDimension);
A.CallTo(() => dataFormat.SetParameters(_basicFormat, _columnInfos, null)).Returns(1);
A.CallTo(() => _container.ResolveAll <IDataFormat>()).Returns(new List <IDataFormat>()
{
dataFormat
});
_parser = A.Fake <IDataSourceFileParser>();
_dataRepositoryMapper = A.Fake <IDataSetToDataRepositoryMapper>();
A.CallTo(() => _container.Resolve <IDataSourceFileParser>()).Returns(_parser);
A.CallTo(() => _fakedTimeDimension.HasUnit("min")).Returns(true);
A.CallTo(() => _fakedConcentrationDimension.HasUnit("pmol/l")).Returns(true);
A.CallTo(() => _fakedErrorDimension.HasUnit("pmol/l")).Returns(true);
sut = new OSPSuite.Infrastructure.Import.Services.Importer(_container, _parser, _dataRepositoryMapper, _fakedDimensionFactory);
}
protected override void Context()
{
_dataImporterSettings = new DataImporterSettings();
base.Context();
_mapper = A.Fake <IDataSetToDataRepositoryMapper>();
var cache = new Cache <string, IDataSet>();
var dataSet = new DataSet();
dataSet.AddData(new List <ParsedDataSet>()
{
new ParsedDataSet(new List <string>(), A.Fake <DataSheet>(), new List <UnformattedRow>(), new Dictionary <ExtendedColumn, IList <SimulationPoint> >())
});
_dataSource = A.Fake <IDataSource>();
A.CallTo(() => _dataSource.DataSets).Returns(cache);
cache.Add("sheet1", dataSet);
var dataRepository = new DataRepository {
Name = "name"
};
dataRepository.ExtendedProperties.Add(new ExtendedProperty <string>()
{
Name = "Molecule", Value = "Molecule1"
});
dataRepository.ExtendedProperties.Add(new ExtendedProperty <string>()
{
Name = "Mol weight", Value = 22.0.ToString()
});
var dataColumn = new BaseGrid("Time", A.Fake <IDimension>());
var dataInfo = new DataInfo(ColumnOrigins.Undefined);
dataColumn.DataInfo = dataInfo;
dataRepository.Add(dataColumn);
var moleculeDataColumn = new DataColumn("Measurement", A.Fake <IDimension>(), dataColumn);
dataColumn.DataInfo = dataInfo;
dataRepository.Add(moleculeDataColumn);
A.CallTo(() => _mapper.ConvertImportDataSet(A <ImportedDataSet> .Ignored)).Returns(new DataSetToDataRepositoryMappingResult(dataRepository));
var moleculeMetaDataCategory = createMetaDataCategory <string>("Molecule", isMandatory: true);
moleculeMetaDataCategory.IsListOfValuesFixed = true;
moleculeMetaDataCategory.DefaultValue = "Molecule1";
moleculeMetaDataCategory.ListOfValues.Add("Molecule1", 6.0.ToString());
moleculeMetaDataCategory.ShouldListOfValuesBeIncluded = true;
moleculeMetaDataCategory.SelectDefaultValue = true;
_metaDataCategories = new List <MetaDataCategory>()
{
moleculeMetaDataCategory,
createMetaDataCategory <string>("Mol weight", isMandatory: false)
};
var dataFormat = A.Fake <IDataFormat>();
A.CallTo(() => dataFormat.Parameters).Returns(new List <DataFormatParameter>());
_dataSourceFile = A.Fake <IDataSourceFile>();
A.CallTo(() => _dataSourceFile.Format).Returns(dataFormat);
_importerDataPresenter = A.Fake <IImporterDataPresenter>();
A.CallTo(() => _importerDataPresenter.SetDataSource(A <string> .Ignored)).Returns(_dataSourceFile);
_importerView = A.Fake <IImporterView>();
_importer = A.Fake <IImporter>();
_nanPresenter = A.Fake <INanPresenter>();
_importConfirmationPresenter = A.Fake <IImportConfirmationPresenter>();
_columnMappingPresenter = A.Fake <IColumnMappingPresenter>();
_sourceFilePresenter = A.Fake <ISourceFilePresenter>();
_dialogCreator = A.Fake <IDialogCreator>();
_pkmlPeristor = A.Fake <IPKMLPersistor>();
sut = new ImporterPresenterForTest(
_importerView,
_mapper,
_importer,
_nanPresenter,
_importerDataPresenter,
_importConfirmationPresenter,
_columnMappingPresenter,
_sourceFilePresenter,
_dialogCreator,
_pkmlPeristor,
_dataSource);
_importerConfiguration = A.Fake <ImporterConfiguration>();
sut.LoadConfiguration(_importerConfiguration, "");
sut.SetSettings(_metaDataCategories, new ColumnInfoCache(), _dataImporterSettings);
}
public override void GlobalContext()
{
base.GlobalContext();
_fakedTimeDimension = A.Fake <IDimension>();
_fakedConcentrationDimension = A.Fake <IDimension>();
_fakedErrorDimension = A.Fake <IDimension>();
_container = A.Fake <IContainer>();
_dialogCreator = A.Fake <IDialogCreator>();
_fakedDimensionFactory = A.Fake <IDimensionFactory>();
var dataFormat = A.Fake <IDataFormat>();
_columnInfos = new ColumnInfoCache()
{
new ColumnInfo()
{
DisplayName = "Time"
},
new ColumnInfo()
{
DisplayName = "Concentration"
},
new ColumnInfo()
{
DisplayName = "Error"
}
};
_metaDataCategories = new List <MetaDataCategory>()
{
new MetaDataCategory()
{
Name = "Organ"
},
new MetaDataCategory()
{
Name = "Compartment"
},
new MetaDataCategory()
{
Name = "Species"
},
new MetaDataCategory()
{
Name = "Dose"
},
new MetaDataCategory()
{
Name = "Molecule"
},
new MetaDataCategory()
{
Name = "Route"
}
};
_columnInfos["Time"].SupportedDimensions.Add(_fakedTimeDimension);
_columnInfos["Concentration"].SupportedDimensions.Add(_fakedConcentrationDimension);
_columnInfos["Error"].SupportedDimensions.Add(_fakedErrorDimension);
A.CallTo(() => _fakedTimeDimension.HasUnit("min")).Returns(true);
A.CallTo(() => _fakedConcentrationDimension.HasUnit("pmol/l")).Returns(true);
A.CallTo(() => _fakedErrorDimension.HasUnit("pmol/l")).Returns(true);
A.CallTo(() => _container.ResolveAll <IDataFormat>()).Returns(new List <IDataFormat>()
{
new DataFormatHeadersWithUnits(), new DataFormatNonmem(), new MixColumnsDataFormat()
});
_parser = A.Fake <IDataSourceFileParser>();
_dataRepositoryMapper = A.Fake <IDataSetToDataRepositoryMapper>();
A.CallTo(() => _container.Resolve <IDataSourceFileParser>()).Returns(_parser);
sut = new OSPSuite.Infrastructure.Import.Services.Importer(_container, _parser, _dataRepositoryMapper, _fakedDimensionFactory);
}