//how to assemble the workspace from an idpXML
public static void loadWorkspace(ref IDPicker.Workspace workspace, string assemblyFile)
{
if (workspace == null)
{
return;
}
try
{
workspace.readPeptidesXml(new StreamReader(assemblyFile), "", 1.0f, 1);
}
catch (Exception e)
{
Console.Error.WriteLine(e.StackTrace.ToString());
Console.Error.WriteLine("Error reading input filepath \"" + assemblyFile + "\": " + e.Message);
Environment.Exit(1);
}
// Create peptide groups by grouping peptide identifications
// that mapped to same proteins into a single group.
workspace.assemblePeptideGroups();
}
public void qonverter_QonversionProgress (object sender, IDPicker.Qonverter.QonversionProgressEventArgs eventArgs)
{
Assert.AreEqual(Qonverter, sender);
Assert.AreEqual(ExpectedQonvertedAnalyses, eventArgs.QonvertedAnalyses);
Assert.AreEqual(eventArgs.Message.StartsWith("counting") ? 0 : ExpectedTotalAnalyses, eventArgs.TotalAnalyses);
if (CancelAtCount == eventArgs.QonvertedAnalyses)
eventArgs.Cancel = true;
else
Assert.IsTrue(eventArgs.QonvertedAnalyses < CancelAtCount);
if (eventArgs.Message == "")
++ExpectedQonvertedAnalyses;
}