private void addAdvancedParameterIfRequired(IParameter parameter, PopulationSimulation populationSimulation)
{
if (!parameter.CanBeDefinedAsAdvanced())
{
return;
}
var advancedParameter = _advancedParameterFactory.Create(parameter, DistributionTypes.Unknown);
//do not generate random values as these were loaded from files
populationSimulation.AddAdvancedParameter(advancedParameter, generateRandomValues: false);
}
private ICommand addParameterVariability(IndividualMolecule individualMolecule, IParameter parameter, Population population, bool usePredefinedMeanVariability)
{
var predefinedVariability = _moleculeParameterRepository.ParameterFor(individualMolecule.Name, parameter.Name);
if (predefinedVariability == null)
return new PKSimEmptyCommand();
var advancedParameter = _advancedParameterFactory.Create(parameter, predefinedVariability.Formula.DistributionType());
advancedParameter.DistributedParameter.MeanParameter.Value = usePredefinedMeanVariability ? predefinedVariability.MeanParameter.Value : parameter.Value;
advancedParameter.DistributedParameter.DeviationParameter.Value = predefinedVariability.DeviationParameter.Value;
return _advancedParametersTask.AddAdvancedParameter(advancedParameter, population);
}
private void createAdvancedParametersFor(ImportPopulation importPopulation)
{
foreach (var parameterPath in importPopulation.IndividualPropertiesCache.AllParameterPaths())
{
if (_allCreateIndividualParameters.Contains(parameterPath))
{
continue;
}
var advancedParameter = _advancedParameterFactory.Create(_allParameters[parameterPath], DistributionTypes.Unknown);
//do not generate random values as these were loaded from files
importPopulation.AddAdvancedParameter(advancedParameter, generateRandomValues: false);
}
}
public override async Task <ModelAdvancedParameter> MapToModel(SnapshotAdvancedParameter snapshot, PathCache <IParameter> allParameters)
{
var parameter = allParameters[snapshot.Name];
if (parameter == null)
{
_logger.AddWarning(PKSimConstants.Error.SnapshotParameterNotFound(snapshot.Name));
return(null);
}
var advancedParameter = _advancedParameterFactory.Create(parameter, DistributionTypes.ById(snapshot.DistributionType));
advancedParameter.Seed = snapshot.Seed;
await UpdateParametersFromSnapshot(snapshot, advancedParameter.DistributedParameter);
return(advancedParameter);
}