public void GenerateJsonResponse(IDictionary <string, string> mimToGeneSymbol)
{
var i = 0;
var mimNumbers = mimToGeneSymbol.Select(x => x.Key).ToArray();
bool needComma = false;
using (Stream gzStream = new GZipStream(_jsonResponseStream, CompressionMode.Compress))
using (StreamWriter writer = new StreamWriter(gzStream))
{
while (i < mimNumbers.Length)
{
int endMimNumberIndex = Math.Min(i + EntryQueryLimit - 1, mimNumbers.Length - 1);
string mimNumberString = GetMimNumbersString(mimNumbers, i, endMimNumberIndex);
string queryUrl = GetApiQueryUrl(OmimApiUrl, EntryHandler, ("mimNumber", mimNumberString),
("include", "text:description"), ("include", "externalLinks"), ("include", "geneMap"),
("format", ReturnDataFormat));
using (var response = _httpClient.GetAsync(queryUrl).Result)
{
string responseContent = response.Content.ReadAsStringAsync().Result;
string entries = SetPrefixAndGetEntriesString(responseContent);
if (i == 0)
{
writer.Write(_jsonPrefix);
}
if (needComma)
{
writer.Write(',');
}
writer.Write(entries);
needComma = true;
}
i = endMimNumberIndex + 1;
}
writer.WriteLine(JsonTextEnding);
}
}
public void GenerateJsonResponse()
{
var i = 0;
var mimNumbers = GetMimsToDownload();
var needComma = false;
using Stream gzStream = new GZipStream(_jsonResponseStream, CompressionMode.Compress);
using StreamWriter writer = new StreamWriter(gzStream);
while (i < mimNumbers.Count)
{
var endMimNumberIndex = Math.Min(i + EntryQueryLimit - 1, mimNumbers.Count - 1);
var mimNumberString = GetMimNumbersString(mimNumbers, i, endMimNumberIndex);
var queryUrl = GetApiQueryUrl(OmimApiUrl, EntryHandler, ("mimNumber", mimNumberString),
("include", "text:description"), ("include", "externalLinks"), ("include", "geneMap"),
("format", ReturnDataFormat));
using (var response = _httpClient.GetAsync(queryUrl).Result)
{
string responseContent = response.Content.ReadAsStringAsync().Result;
string entries = SetPrefixAndGetEntriesString(responseContent);
if (i == 0)
{
writer.Write(_jsonPrefix);
}
if (needComma)
{
writer.Write(',');
}
writer.Write(entries);
needComma = true;
}
i = endMimNumberIndex + 1;
}
writer.WriteLine(JsonTextEnding);
}
private IEnumerable <OmimItem> GetOmimItemsFromMinNumbers(IDictionary <string, string> mimToGeneSymbol, ZipArchive zipArchive)
{
var i = 0;
var queryIndex = 1;
var mimNumbers = mimToGeneSymbol.Select(x => x.Key).ToArray();
while (i < mimNumbers.Length)
{
int endMimNumberIndex = Math.Min(i + EntryQueryLimit - 1, mimNumbers.Length - 1);
string mimNumberString = GetMimNumbersString(mimNumbers, i, endMimNumberIndex);
string queryUrl = GetApiQueryUrl(OmimApiUrl, EntryHandler, ("mimNumber", mimNumberString), ("include", "text:description"), ("include", "externalLinks"), ("include", "geneMap"), ("format", ReturnDataFormat));
using (StreamWriter writer = zipArchive == null ? null : new StreamWriter(zipArchive.CreateEntry($"EntryQueryResponses/response{queryIndex}.txt").Open()))
using (var response = _httpClient.GetAsync(queryUrl).Result)
{
string responseContent = response.Content.ReadAsStringAsync().Result;
writer?.Write(responseContent);
var entryResponse = JsonConvert.DeserializeObject <EntryRoot>(responseContent);
var entryIndex = 0;
foreach (var entry in entryResponse.omim.entryList)
{
int mimNumber = entry.entry.mimNumber;
string description = OmimUtilities.RemoveLinksInText(entry.entry.textSectionList?[0].textSection.textSectionContent);
string geneName = entry.entry.geneMap?.geneName;
var phenotypes = entry.entry.geneMap?.phenotypeMapList?.Select(x => OmimUtilities.GetPhenotype(x, _jsonSchema.GetSubSchema("phenotypes"))).ToList() ??
new List <OmimItem.Phenotype>();
yield return(new OmimItem(mimToGeneSymbol[mimNumber.ToString()], geneName, description, mimNumber, phenotypes, _jsonSchema));
entryIndex++;
}
}
i = endMimNumberIndex + 1;
queryIndex++;
}
}
