public static GalaxyJobStatus String2JobStatus(string strJobStatus)
{
GalaxyJobStatus jobStatus = GalaxyJobStatus.Unknown;
if (strJobStatus == "Queued")
{
jobStatus = GalaxyJobStatus.Queued;
}
else if (strJobStatus == "Waiting")
{
jobStatus = GalaxyJobStatus.Waiting;
}
else if (strJobStatus == "Running")
{
jobStatus = GalaxyJobStatus.Running;
}
else if (strJobStatus == "Successful")
{
jobStatus = GalaxyJobStatus.Successful;
}
else if (strJobStatus == "Failed")
{
jobStatus = GalaxyJobStatus.Failed;
}
return(jobStatus);
}
public static string JobStatus2String(GalaxyJobStatus jobStatus)
{
string strJobStatus = "";
switch (jobStatus)
{
case GalaxyJobStatus.Unknown:
strJobStatus = "Unknown";
break;
case GalaxyJobStatus.Waiting:
strJobStatus = "Waiting";
break;
case GalaxyJobStatus.Queued:
strJobStatus = "Queued";
break;
case GalaxyJobStatus.Running:
strJobStatus = "Running";
break;
case GalaxyJobStatus.Successful:
strJobStatus = "Successful";
break;
case GalaxyJobStatus.Failed:
strJobStatus = "Failed";
break;
}
return(strJobStatus);
}
/// <returns>
/// 0 - successfully
/// -1 - failed
/// </returns>
public int LoadFromFile(string strJobFileName)
{
int iRet = 0;
try
{
XmlDocument jobDoc = new XmlDocument();
jobDoc.Load(strJobFileName);
XmlElement root = jobDoc.DocumentElement;
XmlNodeList jobNodeList = root.SelectNodes("GalaxyJob");
foreach (XmlNode jobNode in jobNodeList)
{
XmlNode jobNameNode = jobNode.SelectSingleNode("JobName");
string strJobName = jobNameNode.InnerText.Trim();
XmlNode jobInstanceNameNode = jobNode.SelectSingleNode("PNInstanceName");
string strPNInstanceName = jobInstanceNameNode.InnerText.Trim();
XmlNode jobIdNode = jobNode.SelectSingleNode("JobId");
Guid jobId = new Guid(jobIdNode.InnerText.Trim());
XmlNode jobStatusNode = jobNode.SelectSingleNode("JobStatus");
GalaxyJobStatus jobStatus = GalaxyJob.String2JobStatus(jobStatusNode.InnerText.Trim());
XmlNode exeNameNode = jobNode.SelectSingleNode("ExeFileName");
string strExeFileName = exeNameNode.InnerText.Trim();
XmlNode relPathNode = jobNode.SelectSingleNode("RelativePath");
string strRelativePath = relPathNode.InnerText.Trim();
XmlNode argsNode = jobNode.SelectSingleNode("Arguments");
string strArgs = argsNode.InnerText.Trim();
XmlNode dataRootDirNode = jobNode.SelectSingleNode("DataRootDir");
string strProjectDataRootDir = dataRootDirNode.InnerText.Trim();
XmlNode userNameNode = jobNode.SelectSingleNode("UserName");
string strUserName = userNameNode.InnerText.Trim();
XmlNode autoReportStatusNode = jobNode.SelectSingleNode("AutoReportStatus");
bool fAutoReportStatus = bool.Parse(autoReportStatusNode.InnerText.Trim());
XmlNode allowLongIdleTimeNode = jobNode.SelectSingleNode("AllowLongIdleTime");
bool fAllowLongIdleTime = bool.Parse(allowLongIdleTimeNode.InnerText.Trim());
XmlNode outputDirNode = jobNode.SelectSingleNode("OutputBaseDir");
string strOutputBaseDir = outputDirNode.InnerText.Trim();
// Get resource file list
XmlNode resourceFilesNode = jobNode.SelectSingleNode("ResourceFiles");
XmlNodeList resourceFileNodeList = resourceFilesNode.SelectNodes("ResourceFile");
List <ResourceFilePair> resourceFileList = new List <ResourceFilePair>();
foreach (XmlNode resourceFileNode in resourceFileNodeList)
{
XmlNode srcFileNode = resourceFileNode.SelectSingleNode("SrcFileName");
XmlNode dstRelFileNode = resourceFileNode.SelectSingleNode("DstRelativeFileName");
ResourceFilePair resourceFile = new ResourceFilePair(srcFileNode.InnerText.Trim(), dstRelFileNode.InnerText.Trim());
resourceFileList.Add(resourceFile);
}
// Get dependent jobs
XmlNode dependentJobsNode = jobNode.SelectSingleNode("DependentJobs");
XmlNodeList dependentJobNodeList = dependentJobsNode.SelectNodes("DependentJob");
List <string> dependentJobs = new List <string>();
foreach (XmlNode dependentJobNode in dependentJobNodeList)
{
string strDependentJobName = dependentJobNode.InnerText.Trim();
dependentJobs.Add(strDependentJobName);
}
if (m_jobDictRefByJobName.ContainsKey(strJobName))
{
return(-1);
}
else
{
GalaxyJob job = new GalaxyJob();
job.AllowLongIdleTime = fAllowLongIdleTime;
job.Arguments = strArgs;
job.AutoReportStatus = fAutoReportStatus;
job.DependentJobs = dependentJobs;
job.ExeFileName = strExeFileName;
job.JobId = jobId;
job.JobStatus = jobStatus;
job.OutputBaseDir = strOutputBaseDir;
job.PNInstanceName = strPNInstanceName;
job.RelativePath = strRelativePath;
job.ResourceFileList = resourceFileList;
job.JobName = strJobName;
job.UserName = strUserName;
job.ProjectDataRootDir = strProjectDataRootDir;
AddJob(job);
}
}
}
catch (Exception)
{
iRet = -1;
}
return(iRet);
}
public GalaxyJobStatusInfo(GalaxyJobStatus jobStatus, string strOutputBaseDir)
{
m_jobStatus = jobStatus;
m_strOutputBaseDir = strOutputBaseDir;
}
