public override GNSettingsTemplateConfig EditOnSubmit(GNSettingsTemplateConfig config)
{
bool auditResult = audit.LogEvent(UserContact, UserContact.Id, this.ENTITY, this.Request.UserHostAddress, EVENT_UPDATE + " " + config.Id);
int GNSettingsTemplateId = int.Parse(Request["GNSettingsTemplatesList"]);
string strGNSettingsTemplateField = Request["GNSettingsTemplateFieldsList"].ToString().Trim();
string Value = Request["Value"].ToString().Trim();
GNSettingsTemplate settingsTemplate = db.GNSettingsTemplates.Where(a => a.Id == GNSettingsTemplateId).FirstOrDefault();
GNSettingsTemplateField GNSettingsTemplateField = db.GNSettingsTemplateFields.Where(a => a.Id.Equals(strGNSettingsTemplateField)).FirstOrDefault();
GNSettingsTemplateConfig dbConfig = db.GNSettingsTemplateConfigs.Find(config.Id);
dbConfig.Value = Value;
dbConfig.GNSettingsTemplateField = GNSettingsTemplateField;
dbConfig.GNSettingsTemplate = settingsTemplate;
db.SaveChanges();
return(dbConfig);
}
public override GNAnalysisRequest DetailsOnLoad(GNAnalysisRequest analysisRequest)
{
EvalActionPrivileges(analysisRequest);
GNCloudStorageService st = new GNCloudStorageService();
// bool res = ((AnalysisRequestService)entityService).tempPersistStatus(analysisRequest);
auditResult = audit.LogEvent(UserContact, analysisRequest.Id, this.ENTITY, this.Request.UserHostAddress, EVENT_LOAD_DETAILS_UI);
//In case during the creation of result files all where left as type=6, review and update to the corredct types.
try
{
if (analysisRequest.AnalysisResult != null && analysisRequest.AnalysisResult.ResultFiles != null)
{
if (analysisRequest.AnalysisResult.ResultFiles.Where(a => a.GNCloudFileCategoryId == 6).Count() > 0)
{
((AnalysisRequestService)entityService).UpdateFileExtensions(analysisRequest.AnalysisResult);
}
}
}
catch (Exception e)
{
}
//Breadcrumbs Info
ViewBag.CurrentAnalysisRequest = analysisRequest;
GNProject Project = db.GNProjects.Where(a => a.Id.Equals(analysisRequest.GNProjectId)).FirstOrDefault();
ViewBag.CurrentProject = Project;
Guid TeamId = Project.Teams.FirstOrDefault().Id;
GNTeam Team = db.GNTeams.Where(a => a.Id.Equals(TeamId)).FirstOrDefault();
ViewBag.CurrentTeam = Team;
ViewBag.DateVCFSentToCartagenia = "NO";
try
{
string stsCartagenia = "CARTAGENIA";
GNAnalysisStatus statusCartagenia = db.GNAnalysisStatus.Where(a => a.GNAnalysisRequestId == analysisRequest.Id && a.Status == stsCartagenia).FirstOrDefault();
if (statusCartagenia != null)
{
ViewBag.DateVCFSentToCartagenia = TimeZoneInfo.ConvertTime((DateTime)statusCartagenia.CreateDateTime, analysisRequest.Project.Teams.FirstOrDefault().Organization.OrgTimeZoneInfo).ToString();
}
}
catch (Exception notFound)
{
ViewBag.DateVCFSentToCartagenia = "NO";
}
GNSettingsTemplate Template = db.GNOrganizations.Where(a => a.Id.Equals(Team.OrganizationId)).FirstOrDefault().GNSettingsTemplate;
ViewBag.TemplateConfigTertiaryFrequency = (Double.Parse(Template.GNSettingsTemplateConfigs.Where(a => a.GNSettingsTemplateField.Id.Equals("TERTIARY_FREQUENCY")).FirstOrDefault().Value) * 100);
ViewBag.TemplateConfigTertiarySplicingTreshold = Template.GNSettingsTemplateConfigs.Where(a => a.GNSettingsTemplateField.Id.Equals("TERTIARY_SPLICING_THRESHOLD")).FirstOrDefault().Value;
//2016.02.04 if the last status was error due to a corrupted file, attach the name of the file to the short status
ViewBag.CorruptFilenameFound = "NA";
if (analysisRequest.CurrentStatusShort.Equals("ERROR"))
{
string lastStatusReported = analysisRequest.AnalysisStatus.LastOrDefault().Message;
if (lastStatusReported.Contains("corrupt file"))
{
string corruptFileName = lastStatusReported.Substring(lastStatusReported.LastIndexOf('/') + 1);
ViewBag.CorruptFilenameFound = analysisRequest.CurrentStatusShort + ": corrupt file found " + corruptFileName;
}
}
if (Request["sampleId"] != null)
{
Guid sampleId = Guid.Parse(Request["sampleId"]);
GNSample Sample = db.GNSamples.Where(a => a.Id.Equals(sampleId)).FirstOrDefault();
ViewBag.CurrentSample = Sample;
}
return(base.DetailsOnLoad(analysisRequest));
}
