public void TestGroupComparisonClustering()
{
RunDlg <EditGroupComparisonDlg>(SkylineWindow.AddGroupComparison, dlg =>
{
dlg.GroupComparisonDef = GroupComparisonDef.EMPTY
.ChangeControlAnnotation("Condition")
.ChangeControlValue("Healthy")
.ChangeIdentityAnnotation("BioReplicate")
.ChangePerProtein(true)
.ChangeNormalizationMethod(NormalizationMethod.GLOBAL_STANDARDS);
dlg.TextBoxName.Text = PER_PROTEIN_NAME;
dlg.OkDialog();
});
RunUI(() => SkylineWindow.ShowGroupComparisonWindow(PER_PROTEIN_NAME));
FoldChangeGrid grid = FindOpenForm <FoldChangeGrid>();
WaitForCondition(() => grid.DataboundGridControl.IsComplete);
RunUI(() => grid.DataboundGridControl.ChooseView("Clustered"));
WaitForCondition(() => grid.DataboundGridControl.IsComplete && 0 != grid.DataboundGridControl.RowCount);
var heatMap = ShowDialog <HierarchicalClusterGraph>(() => grid.DataboundGridControl.ShowHeatMap());
var pcaPlot = ShowDialog <PcaPlot>(() => grid.DataboundGridControl.ShowPcaPlot());
OkDialog(heatMap, heatMap.Close);
OkDialog(pcaPlot, pcaPlot.Close);
}
public int GetRowCount(FoldChangeGrid grid)
{
var count = -1;
RunUI(() => count = grid.DataboundGridControl.RowCount);
return(count);
}
private void RunScenario(string scenarioName)
{
RunUI(() => SkylineWindow.OpenSharedFile(TestFilesDir.GetTestPath(scenarioName + ".sky.zip")));
if (null != TestContext.TestRunResultsDirectory)
{
var directory = Path.Combine(TestContext.TestRunResultsDirectory, "GroupComparisonScenariosTest");
Directory.CreateDirectory(directory);
string baseName = Path.Combine(directory, scenarioName);
RunUI(() => SkylineWindow.ShareDocument(baseName + ".sky.zip", ShareType.COMPLETE));
foreach (var groupComparison in SkylineWindow.Document.Settings.DataSettings.GroupComparisonDefs)
{
String groupComparisonName = groupComparison.Name;
FoldChangeGrid foldChangeGrid =
ShowDialog <FoldChangeGrid>(() => SkylineWindow.ShowGroupComparisonWindow(groupComparisonName));
var reports = new[]
{
"GroupComparisonColumns"
};
var dsvWriter = new DsvWriter(CultureInfo.InvariantCulture, ',')
{
NumberFormatOverride = Formats.RoundTrip
};
foreach (String report in reports)
{
WaitForConditionUI(() => foldChangeGrid.DataboundGridControl.IsComplete &&
null != foldChangeGrid.FoldChangeBindingSource.GroupComparisonModel.Results &&
null != foldChangeGrid.DataboundGridControl.BindingListSource.ViewContext);
// ReSharper disable AccessToForEachVariableInClosure
RunUI(() => { foldChangeGrid.DataboundGridControl.ChooseView(report); });
// ReSharper restore AccessToForEachVariableInClosure
WaitForConditionUI(() => foldChangeGrid.DataboundGridControl.IsComplete);
String exportPath = Path.Combine(directory,
scenarioName + "_" + groupComparisonName + "_" + report + ".csv");
RunUI(() =>
{
var viewContext = (AbstractViewContext)foldChangeGrid.DataboundGridControl.NavBar.ViewContext;
viewContext.ExportToFile(foldChangeGrid,
foldChangeGrid.DataboundGridControl.BindingListSource, exportPath,
dsvWriter);
}
);
}
OkDialog(foldChangeGrid, foldChangeGrid.Close);
}
}
}
public void WaitForVolcanoPlotPointCount(FoldChangeGrid grid, int expected)
{
WaitForConditionUI(() => expected == grid.DataboundGridControl.RowCount && grid.DataboundGridControl.IsComplete,
string.Format("Expecting {0} points found {1}", expected, GetRowCount(grid)));
}
