public SearchLevel1(string programName, FlagLevel level, string fileName, int start, int rows) : base(programName, level, fileName)
{
if (start % 2 == 0)
{
ShowError("Please enter odd number for start position.");
}
else
{
this.startIndex = start;
this.rows = rows;
}
}
public SearchLevel3(string programName, FlagLevel level, string file, string query, string result) : base(programName, level, file)
{
this.queryFileName = query;
this.resultFileName = result;
try
{
streamReader = new StreamReader(this.queryFileName);
streamWriter = new StreamWriter(this.resultFileName);
}
catch (Exception ex)
{
ShowError(ex.Message);
}
}
public Search(string programName, FlagLevel searchLevel, string dataFileName)
{
this.programName = programName;
this.searchLevel = searchLevel;
this.dataFileName = dataFileName;
try
{
reader = new FastaReader(dataFileName);
}
catch (Exception ex)
{
Console.WriteLine(ex.Message);
}
}
///<summary>
/// Validate the flag level
///</summary>
///<remark>
///<returns>
///if validate pass return true otherwise false
///</returns>
///</remark>
private bool ValidateLevel()
{
bool result = true;
if (args[1].Equals("-level1"))
{
this.level = FlagLevel.Level1;
}
else if (args[1].Equals("-level2"))
{
this.level = FlagLevel.Level2;
}
else if (args[1].Equals("-level3"))
{
this.level = FlagLevel.Level3;
}
else
{
ShowError("Please enter valid level.");
result = false;
}
return(result);
}
public SearchLevel7(string programName, FlagLevel level, string file, string sequenceWildcard) : base(programName, level, file)
{
this.sequenceWildcard = sequenceWildcard;
}
public SearchLevel2(string programName, FlagLevel level, string file, string sequenceId) : base(programName, level, file)
{
this.sequenceId = sequenceId;
}
