public void TestParallelFeatureDetection()
{
const string uimfFilePath = @"\\proto-2\UnitTest_Files\MultidimensionalFeatureFinding\BSA_10ugml_IMS6_TOF03_CID_27Aug12_Frodo_Collision_Energy_Collapsed.UIMF";
var uimfUtil = new UimfUtil(uimfFilePath);
var featureDetectionUtil = new FeatureDetectionUtil(uimfFilePath, 11, 4);
var minTargetBin = uimfUtil.GetBinFromMz(500.0);
var maxTargetBin = uimfUtil.GetBinFromMz(600.0);
var targetMzList = Enumerable.Range(minTargetBin, maxTargetBin - minTargetBin + 1).Select(uimfUtil.GetMzFromBin).ToList();
featureDetectionUtil.GetFeatureStatistics(targetMzList, 15, UIMFData.FrameType.MS1, DataReader.ToleranceType.PPM);
}
public void TestParallelFeatureFinding()
{
var fileLocation = @"\\proto-2\UnitTest_Files\MultidimensionalFeatureFinding\BSA_10ugml_IMS6_TOF03_CID_27Aug12_Frodo_Collision_Energy_Collapsed.UIMF";
var targetMzList = new List <double> {
582.3218, 964.40334, 643.27094937
};
var featureUtil = new FeatureDetectionUtil(fileLocation, 11, 4);
var targetDictionary = featureUtil.GetFeatures(targetMzList, 30, UIMFData.FrameType.MS1, DataReader.ToleranceType.PPM);
foreach (var kvp in targetDictionary)
{
Console.WriteLine(kvp.Key + "\t" + kvp.Value.Count());
}
}
public void TestParallelFeatureFindingUsingBins()
{
var fileLocation = @"\\proto-2\UnitTest_Files\MultidimensionalFeatureFinding\BSA_10ugml_IMS6_TOF03_CID_27Aug12_Frodo_Collision_Energy_Collapsed.UIMF";
//List<int> targetBinList = new List<int> { 20000, 30000, 40000, 50000, 60000, 70000, 80000, 90000, 10000 };
var targetBinList = new List <int>();
for (var i = 10000; i < 100000; i += 1000)
{
targetBinList.Add(i);
}
var featureUtil = new FeatureDetectionUtil(fileLocation, 11, 4);
var targetDictionary = featureUtil.GetFeatures(targetBinList, 30, UIMFData.FrameType.MS1, DataReader.ToleranceType.PPM);
//foreach (var kvp in targetDictionary)
//{
// Console.WriteLine(kvp.Key + "\t" + kvp.Value.Count());
//}
}
public ImsData(string filePath)
{
_filePath = filePath;
_uimfUtil = new UimfUtil(filePath);
_featureDetectionUtil = new FeatureDetectionUtil(filePath);
}
public ImsData(string filePath)
{
_filePath = filePath;
_uimfUtil = new UimfUtil(filePath);
_featureDetectionUtil = new FeatureDetectionUtil(filePath);
}
