public void Test()
{
FalseDiscoveryRateOptions option = new FalseDiscoveryRateOptions()
{
FilterByFdr = true,
FdrLevel = FalseDiscoveryRateLevel.Peptide,
FdrPeptideCount = 10,
FdrType = FalseDiscoveryRateType.Total,
FdrValue = 0.01,
MaxPeptideFdr = 0.01
};
XElement root = new XElement("Root");
option.Save(root);
FalseDiscoveryRateOptions target = new FalseDiscoveryRateOptions();
target.Load(root);
Assert.AreEqual(option.FilterByFdr, target.FilterByFdr);
Assert.AreEqual(option.FdrLevel, target.FdrLevel);
Assert.AreEqual(option.FdrPeptideCount, target.FdrPeptideCount);
Assert.AreEqual(option.FdrType, target.FdrType);
Assert.AreEqual(option.FdrValue, target.FdrValue);
Assert.AreEqual(option.MaxPeptideFdr, target.MaxPeptideFdr);
}
public BuildSummaryOptions()
{
MergeResult = true;
KeepTopPeptideFromSameEngineButDifferentSearchParameters = true;
SavePeptidesFile = true;
IsSemiPeptideConsiderAsUnique = true;
Database = new DatabaseOptions();
FalseDiscoveryRate = new FalseDiscoveryRateOptions();
Classification = new ClassificationOptions();
PeptideFilter = new PeptideFilterOptions();
DatasetList = new DatasetListOptions();
ConflictType = ResolveSearchEngineConflictTypeFactory.QValue;
MinimumEngineAgreeCount = 1;
PeptideRetrieval = false;
}
