public void DnaStringTest()
{
Console.WriteLine(GetSize(TestString));
var dnaString = new DnaString(TestString);
Console.WriteLine(GetSize(dnaString.Content));
string s = dnaString.ToString();
Assert.AreEqual(TestString, s);
}
public void DnaStringWithBiasTest()
{
var dnaString = new DnaString(
"GTTATTATGATGATCGGAGATTTGCCCTGTTCGTTATTGATAACGGGTTCACGGACCGAATGCGCCCTCGGCTCAGTACGAACGTTATAACGCGCACCGG",
false,
3);
var rnaSequence = MaxRnaSequenceFinder.GetMaxRnaSequence(dnaString);
Assert.AreEqual(
"atgatgatcggagatttgccctgttcgttattgataacgggttcacggaccgaatgcgccctcggctcagtacgaacgttataa",
string.Concat(rnaSequence.Values).ToLower());
Assert.AreEqual(false, rnaSequence.Reversed);
Assert.AreEqual(new DnaStringRange(9, 92), rnaSequence.DnaStringRange);
}
public void DnaStringWithTggTest()
{
var dnaString = new DnaString(
string.Concat("ATG", "ATT", "TGG", "ATC", "GGG", "ATG", "GTA" + "TGC" + "TAG"),
false,
1);
var rnaSequence = MaxRnaSequenceFinder.GetMaxRnaSequence(dnaString);
Assert.AreEqual(
string.Concat("ATG", "GTA" + "TGC" + "TAG"),
string.Concat(rnaSequence.Values));
Assert.AreEqual(false, rnaSequence.Reversed);
Assert.AreEqual(new DnaStringRange(16, 27), rnaSequence.DnaStringRange);
Assert.AreEqual(1, rnaSequence.ReadingFrame);
}