/// <summary>
/// ****** INTERNAL USE ONLY ****
///
/// Returns a validator instance lookup key for a DicomAttribute attribute.
///
/// </summary>
/// <param name="attribute"></param>
/// <returns></returns>
static internal int GetKey(DicomAttribute attribute)
{
// use attribute parent collection hashcode as key
// if the attribute doesn't have a parent collection, use its type instead
int key;
if (attribute.ParentCollection != null)
key = attribute.ParentCollection.GetHashCode();
else
key = attribute.GetType().GetHashCode();
return key;
}
/// <summary>
/// Sets the dicom attribute value from enum. Sets it to upper case as per dicom Standard.
/// If <paramref name="formatFromPascal"/> is true, then it formats the <paramref name="value"/> from Pascal - ie, MammoClear would
/// be set as MAMMO CLEAR .
/// </summary>
/// <param name="dicomAttribute">The dicom attribute.</param>
/// <param name="value">The value.</param>
/// <param name="formatFromPascal">if set to <c>true</c> [format from pascal].</param>
public static void SetAttributeFromEnum(DicomAttribute dicomAttribute, object value, bool formatFromPascal)
{
if (value == null || String.IsNullOrEmpty(value.ToString()) || String.Compare(value.ToString(), "None", StringComparison.OrdinalIgnoreCase) == 0 || String.Compare(value.ToString(), "Unknown", StringComparison.OrdinalIgnoreCase) == 0)
{
dicomAttribute.SetNullValue();
}
else
{
if (formatFromPascal)
{
value = FormatFromPascal(value.ToString());
}
dicomAttribute.SetStringValue(value.ToString().ToUpperInvariant());
}
}
public override string GetTypedValue(IStudyItem item)
{
DicomAttribute attribute = item[base.Tag];
if (attribute == null)
{
return(null);
}
if (attribute.IsNull)
{
return(string.Empty);
}
return(attribute.ToString());
}
private void InsertStringDicomElement(DicomAttributeCollection dataHeader, Tag stringTagName,
string tagValue)
{
var element = DicomAttribute.CreateAttribute(stringTagName);
if (tagValue == null)
{
return;
}
if (!element.SetString(0, tagValue))
{
Logger.LogWarning("Failed to Insert NULL " + stringTagName.ToString() + " to Data header");
}
dataHeader.AddDicomAttribute(element);
}
/// <summary>
/// Return an instance of the TMStringValidator object
/// Note: the returned object may be shared among threads or objects.
/// </summary>
/// <param name="attribute"></param>
/// <returns></returns>
/// <remarks>
///
///</remarks>
public static TMStringValidator GetInstance(DicomAttribute attribute)
{
lock (_mutex)
{
int key = GetKey(attribute);
TMStringValidator validator = _map[key] as TMStringValidator;
if (validator == null)
{
validator = new TMStringValidator();
_map[key] = validator;
}
return(validator);
}
}
protected void CacheArrayStatus(uint tagCode, string [] value)
{
if (_dataHead.Contains(tagCode))
{
_dataHead.RemoveDicomAttribute(tagCode);
}
DicomTag tag = new DicomTag(tagCode, "", VR.CS, true, false);
DicomAttribute dicomAttr = DicomAttribute.CreateAttribute(tag);
for (int i = 0; i < value.Length; i++)
{
dicomAttr.SetString(i, value[i]);
}
_dataHead.AddDicomAttribute(dicomAttr);
}
public override bool TryGetAttribute(uint tag, out DicomAttribute attribute)
{
lock (SyncLock)
{
if (_sop.IsStoredTag(tag))
{
attribute = _sop[tag];
if (!attribute.IsEmpty)
{
return(true);
}
}
return(base.TryGetAttribute(tag, out attribute));
}
}
public bool SetFloat(uint tagCode, float value)
{
if (_dataHead.Contains(tagCode))
{
_dataHead.RemoveDicomAttribute(tagCode);
}
DicomVR TagVR = new DicomVR(VR.FL);
DicomTag tag = new DicomTag(tagCode);
tag.TagVR = TagVR;
DicomAttribute dicomAttr = DicomAttribute.CreateAttribute(tag);
dicomAttr.SetFloat32(0, value);
_dataHead.AddDicomAttribute(dicomAttr);
return(true);
}
private void GetTag <T>(uint tag, out T value, uint position, out bool tagExists, GetTagDelegate <T> getter)
{
value = default(T);
tagExists = false;
DicomAttribute dicomAttribute = this[tag];
if (dicomAttribute != null)
{
tagExists = !dicomAttribute.IsEmpty && dicomAttribute.Count > position;
if (tagExists)
{
getter(dicomAttribute, position, out value);
}
}
}
public bool SetString16Array(uint tagCode, string [] value)
{
if (_dataHead.Contains(tagCode))
{
_dataHead.RemoveDicomAttribute(tagCode);
}
DicomTag tag = new DicomTag(tagCode, "", VR.CS, true, false);
DicomAttribute dicomAttr = DicomAttribute.CreateAttribute(tag);
for (int i = 0; i < value.Length; i++)
{
dicomAttr.SetString(i, value[i]);
}
_dataHead.AddDicomAttribute(dicomAttr);
return(true);
}
private bool MatchVr(DicomAttribute element)
{
DicomVr elementVr = element.Tag.VR;
if (!elementVr.Equals(DicomVr.DAvr) && !elementVr.Equals(DicomVr.TMvr) && !elementVr.Equals(DicomVr.DTvr))
{
return(false);
}
if (HasWildcardMatching(element.ToString( )))
{
return(false);
}
return(true);
}
public static void InsertBytesDicomElement(DicomAttributeCollection dataHeader, Tag stringTagName, byte[] tagValues)
{
var element = DicomAttribute.CreateAttribute(stringTagName);
if (tagValues == null)
{
return;
}
if (!element.SetBytes(0, tagValues))
{
Logger.LogWarning("Failed to Insert NULL " + stringTagName.ToString() + " to Data header");
}
dataHeader.AddDicomAttribute(element);
}
protected void CacheStatus(uint tagCode, string value)
{
if (_dataHead.Contains(tagCode))
{
_dataHead.RemoveDicomAttribute(tagCode);
}
DicomVR TagVR = new DicomVR(VR.CS);
DicomTag tag = new DicomTag(tagCode);
tag.TagVR = TagVR;
DicomAttribute dicomAttr = DicomAttribute.CreateAttribute(tag);
dicomAttr.SetString(0, value);
_dataHead.AddDicomAttribute(dicomAttr);
}
public void PrivateAttributeTest()
{
DicomFile file = new DicomFile("LittleEndianPrivateReadFileTest.dcm");
DicomAttributeCollection dataSet = file.DataSet;
SetupMR(dataSet);
dataSet[DicomTags.StudyDescription].SetNullValue();
List <DicomTag> tagList = new List <DicomTag>();
SetupPrivateGroups(tagList, dataSet);
SetupMetaInfo(file);
// Little Endian Tests
file.TransferSyntax = TransferSyntax.ImplicitVrLittleEndian;
DicomReadOptions readOptions = DicomReadOptions.Default;
// Use ExplicitLengthSequence to force SQ attributes to UN VR when they're read back in
Assert.IsTrue(file.Save(DicomWriteOptions.ExplicitLengthSequence));
DicomFile newFile = new DicomFile(file.Filename);
newFile.Load(readOptions);
Assert.IsTrue(newFile.DataSet[DicomTags.StudyDescription].IsNull);
Assert.AreNotEqual(file.DataSet.Equals(newFile.DataSet), true);
foreach (DicomTag tag in tagList)
{
DicomAttributeUN unAttrib = newFile.DataSet[tag] as DicomAttributeUN;
Assert.IsNotNull(unAttrib, String.Format("UN VR Attribute is not null for tag {0}", tag));
ByteBuffer bb = unAttrib.GetByteBuffer(TransferSyntax.ImplicitVrLittleEndian,
newFile.DataSet[DicomTags.SpecificCharacterSet].ToString());
Assert.IsNotNull(bb, String.Format("ByteBuffer not null for tag: {0}", tag));
DicomAttribute validAttrib = tag.VR.CreateDicomAttribute(tag, bb);
Assert.IsNotNull(validAttrib);
Assert.IsTrue(validAttrib.Equals(file.DataSet[tag]), String.Format("Attributes equal for tag {0}", tag));
}
}
/// <summary>
/// ****** INTERNAL USE ONLY ****
///
/// Returns a validator instance lookup key for a DicomAttribute attribute.
///
/// </summary>
/// <param name="attribute"></param>
/// <returns></returns>
static internal int GetKey(DicomAttribute attribute)
{
// use attribute parent collection hashcode as key
// if the attribute doesn't have a parent collection, use its type instead
int key;
if (attribute.ParentCollection != null)
{
key = attribute.ParentCollection.GetHashCode();
}
else
{
key = attribute.GetType().GetHashCode();
}
return(key);
}
public bool GetUInt16(DicomAttributeCollection headInfo, Tag tag, out ushort value)
{
if (!headInfo.Contains(tag))
{
value = 0;
return(false);
}
else
{
DicomAttribute element = headInfo[tag];
if (!element.GetUInt16(0, out value))
{
return(false);
}
return(true);
}
}
internal static void AddCondition(ref string query, DicomAttribute condition, string dbname)
{
object[] values;
if ((condition.Exists) && (condition.Value != null))
{
if (condition.IsMultiple)
{
query = query + " AND ( 1=0 ";
values = condition.Value as object[];
query = values.Aggregate(query, (current, value) => current + " OR " + dbname + " = '" + value.ToString() + "'");
query = query + " )";
}
else
{
AddStringCondition(ref query, condition.Value.ToString(), dbname);
}
}
}
/// <summary>
/// Sends the move request (called after the association is accepted).
/// </summary>
/// <param name="client">The client.</param>
/// <param name="association">The association.</param>
private void SendMoveRequest(DicomClient client, ClientAssociationParameters association)
{
byte pcid = association.FindAbstractSyntaxOrThrowException(MoveSopClass);
var dicomMessage = new DicomMessage();
foreach (DicomAttribute dicomAttribute in _dicomAttributeCollection)
{
// Need to do it this way in case the attribute is blank
DicomAttribute dicomAttribute2 = dicomMessage.DataSet[dicomAttribute.Tag];
if (dicomAttribute.Values != null)
{
dicomAttribute2.Values = dicomAttribute.Values;
}
}
_moveMessageId = client.NextMessageID();
client.SendCMoveRequest(pcid, _moveMessageId, _destinationAe, dicomMessage);
}
/// <summary>
/// Sets the date time attribute values for the specified dicom attributes.
/// Will first attempt to write to the <paramref name="dateTimeAttribute"/> if it is not null, otherwise
/// it will write the values to the separate date and time attributes.
/// </summary>
/// <param name="value">The value.</param>
/// <param name="dateTimeAttribute">The date time attribute.</param>
/// <param name="dateAttribute">The date attribute.</param>
/// <param name="timeAttribute">The time attribute.</param>
public static void SetDateTimeAttributeValues(DateTime?value, DicomAttribute dateTimeAttribute, DicomAttribute dateAttribute, DicomAttribute timeAttribute)
{
if (dateTimeAttribute != null)
{
if (value.HasValue)
{
dateTimeAttribute.SetDateTime(0, value.Value);
}
else
{
dateTimeAttribute.SetNullValue();
}
}
else
{
SetDateTimeAttributeValues(value, dateAttribute, timeAttribute);
}
}
public void ReadPixelDataReferencesTest()
{
DicomFile file = new DicomFile("LittleEndianReadFileTest2.dcm");
DicomAttributeCollection dataSet = file.DataSet;
SetupMR(dataSet);
SetupMetaInfo(file);
// Little Endian Tests
file.TransferSyntax = TransferSyntax.ExplicitVrLittleEndian;
DicomReadOptions readOptions = DicomReadOptions.StorePixelDataReferences;
bool result = file.Save(DicomWriteOptions.Default);
Assert.AreEqual(result, true);
DicomFile newFile = new DicomFile(file.Filename);
newFile.Load(readOptions);
DicomAttribute attrib = newFile.DataSet[DicomTags.PixelData];
Assert.IsFalse(attrib.IsEmpty);
Assert.IsFalse(attrib.IsNull);
Assert.AreEqual(attrib.StreamLength, dataSet[DicomTags.PixelData].StreamLength);
// Set the pixel data to null and re-read
dataSet[DicomTags.PixelData].SetNullValue();
result = file.Save(DicomWriteOptions.Default);
Assert.AreEqual(result, true);
newFile = new DicomFile(file.Filename);
newFile.Load(readOptions);
attrib = newFile.DataSet[DicomTags.PixelData];
Assert.IsFalse(attrib.IsEmpty);
Assert.IsTrue(attrib.IsNull);
Assert.AreEqual(attrib.StreamLength, dataSet[DicomTags.PixelData].StreamLength);
}
public bool SetInt32(uint tagCode, int value)
{
if (_dataHead.Contains(tagCode))
{
_dataHead.RemoveDicomAttribute(tagCode);
}
DicomVR TagVR = new DicomVR(VR.SL);
DicomTag tag = new DicomTag(tagCode);
tag.TagVR = TagVR;
DicomAttribute dicomAttr = DicomAttribute.CreateAttribute(tag);
if (!dicomAttr.SetInt32(0, value))
{
return(false);
}
_dataHead.AddDicomAttribute(dicomAttr);
return(true);
}
private bool IsSequenceWithExcludedTags(DicomAttribute attribute)
{
if (!(attribute is DicomAttributeSQ))
{
return(false);
}
var tag = attribute.Tag.TagValue;
// cache the results for the recursive SQ item excluded tags check - it adds up if you've got a multiframe image and functional group sequences get accessed repeatedly
bool sequenceHasExcludedTags;
if (!_sequenceHasExcludedTags.TryGetValue(tag, out sequenceHasExcludedTags))
{
var items = attribute.Values as DicomSequenceItem[];
_sequenceHasExcludedTags[tag] = sequenceHasExcludedTags = (items != null && items.OfType <InstanceXmlDicomSequenceItem>().Any(item => item.HasExcludedTags(true)));
}
return(sequenceHasExcludedTags);
}
public bool SetFloat(uint tagCode, float [] value)
{
if (_dataHead.Contains(tagCode))
{
_dataHead.RemoveDicomAttribute(tagCode);
}
DicomTag tag = new DicomTag(tagCode, "", VR.FL, true, false);
DicomAttribute dicomAttr = DicomAttribute.CreateAttribute(tag);
for (int i = 0; i < value.Length; i++)
{
if (!dicomAttr.SetFloat32(i, value[i]))
{
return(false);
}
}
_dataHead.AddDicomAttribute(dicomAttr);
return(true);
}
internal static void AddDateTimeCondition(ref string query, DicomAttribute DateCondition, DicomAttribute TimeCondition, string dbname)
{
if (!string.IsNullOrEmpty(DateCondition.Value.ToString()) && DateCondition.Value.ToString() != "*" && !string.IsNullOrEmpty(TimeCondition.Value.ToString()) && TimeCondition.Value.ToString() != "*")
{
if (DateCondition.Value.ToString().IndexOf("-", StringComparison.Ordinal) == -1) // if Single Date
{
DateTime t = DateCondition.DateTimeTo;
DateTime startTime = TimeCondition.DateTimeFrom;
DateTime endTime = TimeCondition.DateTimeTo;
DateTime startDateTime = t.Add(new TimeSpan(startTime.Hour, startTime.Minute, startTime.Second));
DateTime endDateTime = t.Add(new TimeSpan(endTime.Hour, endTime.Minute, endTime.Second));
AddSingleDateCondition(ref query, startDateTime, ">=", dbname);
AddSingleDateCondition(ref query, endDateTime, "<=", dbname);
}
else if (DateCondition.Value.ToString().IndexOf("-", StringComparison.Ordinal) == 0) // -YYYYMMDD format
{
DateTime t = DateCondition.DateTimeTo;
DateTime endTime = TimeCondition.DateTimeTo;
DateTime endDateTime = t.Add(new TimeSpan(endTime.Hour, endTime.Minute, endTime.Second));
AddSingleDateCondition(ref query, endDateTime, "<=", dbname);
}
else if (DateCondition.Value.ToString().IndexOf("-", StringComparison.Ordinal) == DateCondition.Value.ToString().Length - 1) // YYYYMMDD- format
{
DateTime t = DateCondition.DateTimeFrom;
DateTime startTime = TimeCondition.DateTimeFrom;
DateTime startDateTime = t.Add(new TimeSpan(startTime.Hour, startTime.Minute, startTime.Second));
AddSingleDateCondition(ref query, startDateTime, ">=", dbname);
}
else // YYYYMMDD-YYYYMMDD format
{
DateTime startDate = DateCondition.DateTimeFrom;
DateTime endDate = DateCondition.DateTimeTo;
DateTime startTime = TimeCondition.DateTimeFrom;
DateTime endTime = TimeCondition.DateTimeTo;
DateTime startDateTime = startDate.Add(new TimeSpan(startTime.Hour, startTime.Minute, startTime.Second));
DateTime endDateTime = endDate.Add(new TimeSpan(endTime.Hour, endTime.Minute, endTime.Second));
AddSingleDateCondition(ref query, startDateTime, ">=", dbname);
AddSingleDateCondition(ref query, endDateTime, "<=", dbname);
}
}
}
public void TestIgnoreOutOfRangeTags()
{
DicomFile file = new DicomFile();
DicomAttributeCollection collection = file.DataSet;
SetupMR(collection);
collection.IgnoreOutOfRangeTags = true;
DicomTag tag = new DicomTag(0x00030010, "Test", "TestBad", DicomVr.STvr, false, 1, 1, false);
Assert.IsNotNull(collection.GetAttribute(tag));
Assert.IsNotNull(collection[tag]);
Assert.IsNotNull(collection[tag.TagValue]);
collection.IgnoreOutOfRangeTags = false;
try
{
collection.GetAttribute(tag);
Assert.Fail("DicomAttributeCollection.GetAttribute failed");
}
catch (DicomException)
{
}
try
{
DicomAttribute attrib = collection[tag];
Assert.Fail("DicomAttributeCollection.GetAttribute failed");
}
catch (DicomException)
{
}
try
{
DicomAttribute attrib = collection[tag.TagValue];
Assert.Fail("DicomAttributeCollection.GetAttribute failed");
}
catch (DicomException)
{
}
}
internal static void AddDateCondition(ref string query, DicomAttribute condition, string dbname)
{
if (condition.Exists && !string.IsNullOrEmpty(condition.Value.ToString()) && condition.Value.ToString() != "*")
{
if (condition.Value.ToString().IndexOf("-", StringComparison.Ordinal) == -1) // if Single Date
{
DateTime t = condition.DateTimeTo;
//note: a single day span is less useful than the provided date to now for our specimen X_rays
t = DateTime.Now; // t.Add(new TimeSpan(23, 59, 59));
AddSingleDateCondition(ref query, t, "<=", dbname);
}
else
{
AddSingleDateCondition(ref query, condition.DateTimeTo, "<=", dbname);
}
AddSingleDateCondition(ref query, condition.DateTimeFrom, ">=", dbname);
}
}
public override string[] GetValues()
{
if (Elements.Count == 0)
{
return(base.GetValues());
}
if (Elements.Count > 1)
{
if (VR == DicomVr.TMvr || VR == DicomVr.DAvr)
{
List <string> values = new List <string> ( );
for (int index = 0; index < Elements.Count; index += 2)
{
DicomAttribute dateElement = null;
DicomAttribute timeElement = null;
string value = null;
for (int localIndex = index; localIndex < index + 2 && localIndex < Elements.Count; localIndex++)
{
var element = Elements[localIndex];
if (element.Tag.VR == DicomVr.DAvr)
{
dateElement = element;
}
else if (element.Tag.VR == DicomVr.TMvr)
{
timeElement = element;
}
}
if (null != dateElement)
{
}
}
}
}
return(base.GetValues( ));
}
/// <summary>
/// Recursively find UI attributes and try to map any known uids it finds (unknown uids are left alone)
/// </summary>
/// <param name="dataset"></param>
/// <param name="uidMap"></param>
private static void MapKnownUids(DicomAttributeCollection dataset, IDictionary <string, string> uidMap)
{
foreach (uint tag in GetTagsToRemap())
{
DicomAttribute attribute = dataset[tag];
int count = (int)(0x7fffffff & attribute.Count);
for (int n = 0; n < count; n++)
{
string originalUid = attribute.GetString(n, "");
if (uidMap.ContainsKey(originalUid))
{
attribute.SetString(n, uidMap[originalUid]);
}
}
}
//foreach (DicomAttribute attribute in dataset)
//{
// if (attribute is DicomAttributeUI)
// {
// int count = (int) (0x7fffffff & attribute.Count);
// for (int n = 0; n < count; n++)
// {
// string originalUid = attribute.GetString(n, "");
// if (uidMap.ContainsKey(originalUid))
// {
// attribute.SetString(n, uidMap[originalUid]);
// }
// }
// }
// else if (attribute is DicomAttributeSQ)
// {
// DicomAttributeSQ sq = (DicomAttributeSQ) attribute;
// int count = (int) (0x7fffffff & attribute.Count);
// for (int n = 0; n < count; n++)
// {
// MapKnownUids(sq[n], uidMap);
// }
// }
//}
}
/// <summary>
/// Gets whether or not the full header is needed in order to retrieve the <see cref="DicomAttribute"/> for
/// the given tag, as opposed to the <see cref="InstanceXml">xml</see>, which may be partial.
/// </summary>
/// <returns>Whether or not the full header should be loaded via <see cref="LoadFullHeader"/>.</returns>
protected virtual bool NeedFullHeader(uint tag)
{
if (_fullHeaderLoaded)
{
return(false);
}
var xmlDataSet = (InstanceXmlDicomAttributeCollection)SourceMessage.DataSet;
// if it's a private tag and not already in the collection, we MUST retrieve full header
// early releases of the study XML functionality excluded private tags but also did not report their exclusion
if (DicomTag.IsPrivateTag(tag) && !xmlDataSet.Contains(tag))
{
return(true);
}
if (xmlDataSet.IsTagExcluded(tag))
{
return(true);
}
DicomAttribute attribute = base[tag];
if (attribute is DicomAttributeSQ)
{
// cache the results for the recursive SQ item excluded tags check - it adds up if you've got a multiframe image and functional group sequences get accessed repeatedly
bool sequenceHasExcludedTags;
if (!_sequenceHasExcludedTags.TryGetValue(tag, out sequenceHasExcludedTags))
{
var items = attribute.Values as DicomSequenceItem[];
_sequenceHasExcludedTags[tag] = sequenceHasExcludedTags = (items != null && items.OfType <InstanceXmlDicomSequenceItem>().Any(item => item.HasExcludedTags(true)));
}
if (sequenceHasExcludedTags)
{
return(true);
}
}
return(false);
}
private bool TryGetXmlAttribute(uint tag, out DicomAttribute attribute)
{
if (_fullHeaderLoaded)
{
attribute = null;
return(false);
}
var needFullHeader = false;
var dataset = SourceMessage.DataSet;
if (dataset.TryGetAttribute(tag, out attribute))
{
//If it's a sequence, it can have excluded tags in it.
if (IsSequenceWithExcludedTags(attribute))
{
needFullHeader = true;
}
else
{
return(true); //We have all we need.
}
}
if (!needFullHeader)
{
// if it's a private tag and not already in the collection (which has been checked already), we MUST retrieve full header
// early releases of the study XML functionality excluded private tags but also did not report their exclusion
if (DicomTag.IsPrivateTag(tag) || ((InstanceXmlDicomAttributeCollection)dataset).IsTagExcluded(tag))
{
needFullHeader = true;
}
}
if (needFullHeader)
{
LoadFullHeader();
}
return(false);
}
public void OnStudyEditing(WebEditStudyContext context)
{
Platform.Log(LogLevel.Info, "Updating OriginalAttributesSequence...");
List <DicomAttribute> values = new List <DicomAttribute>();
foreach (BaseImageLevelUpdateCommand c in context.EditCommands)
{
if (!(c is SetTagCommand))
{
continue;
}
DicomAttribute value = c.UpdateEntry.TagPath.Tag.CreateDicomAttribute();
value.SetStringValue(c.UpdateEntry.OriginalValue);
values.Add(value);
}
int cut = context.Reason.IndexOf("::");
context.EditCommands.Insert(0,
new AddOriginalAttributes(CreateOriginalAttributesSequence(values, null, null,
context.Reason.Substring(0, cut > DicomVr.CSvr.MaximumLength || cut < 0 ? Math.Min((int)DicomVr.CSvr.MaximumLength, context.Reason.Length) : cut))));
}
private static bool IsDateTimeAttributeToAdjust(DicomAttribute attribute)
{
return DateTimeTagsToAdjust.Contains(attribute.Tag.TagValue);
}
private static bool IsUidAttributeToRemap(DicomAttribute attribute)
{
return UidsToRemap.Contains(attribute.Tag.TagValue);
}
private static bool IsAttributeToNull(DicomAttribute attribute)
{
return TagsToNull.Contains(attribute.Tag.TagValue);
}
private static bool IsPrivateAttribute(DicomAttribute attribute)
{
return (attribute.Tag.IsPrivate || attribute.Tag.Name == "Private Tag");
}
private static bool IsAttributeToRemove(DicomAttribute attribute)
{
return IsPrivateAttribute(attribute) || TagsToRemove.Contains(attribute.Tag.TagValue);
}
private static XmlElement CreateDicomAttributeElement(XmlDocument document, DicomAttribute attribute, string name)
{
return CreateDicomAttributeElement(document, attribute.Tag, name);
}
/// <summary>
/// Sets the date time attribute values for the specified dicom attributes.
/// Will first attempt to write to the <paramref name="dateTimeAttribute"/> if it is not null, otherwise
/// it will write the values to the separate date and time attributes.
/// </summary>
/// <param name="value">The value.</param>
/// <param name="dateTimeAttribute">The date time attribute.</param>
/// <param name="dateAttribute">The date attribute.</param>
/// <param name="timeAttribute">The time attribute.</param>
public static void SetDateTimeAttributeValues(DateTime? value, DicomAttribute dateTimeAttribute, DicomAttribute dateAttribute, DicomAttribute timeAttribute)
{
if (dateTimeAttribute != null)
{
if (value.HasValue)
dateTimeAttribute.SetDateTime(0, value.Value);
else
dateTimeAttribute.SetNullValue();
}
else
{
SetDateTimeAttributeValues(value, dateAttribute, timeAttribute);
}
}
/// <summary>
/// Temporary workaround code in place of DicomAttribute.SetInt32(0, value) which can throw a IndexOutOfRangeException if attribute is null
/// </summary>
/// <param name="attrib"></param>
/// <param name="value"></param>
public static void SetInt32(DicomAttribute attrib, int value)
{
//TODO - replace this with DicomAttribute.SetInt32(0, value) when it is fixed (ticket #1411)
attrib.SetString(0, value.ToString());
}
private static void TrySetValue(int index, DicomAttribute attrib)
{
// one of these statements should be able to put a non-null value on the attribute
try {
attrib.SetDateTime(index, DateTime.Now);
} catch(DicomException) {
try {
attrib.SetFloat32(index, 0f);
} catch (DicomException) {
try {
attrib.SetInt16(index, 0);
} catch (DicomException) {
try {
attrib.SetUInt16(index, 0);
} catch (DicomException) {
try {
attrib.SetUid(index, DicomUid.GenerateUid());
} catch (DicomException) {
try {
attrib.SetString(index, "fdsa");
} catch (DicomException) {
try {
attrib.SetString(index, "1");
} catch (DicomException) {
try {
attrib.SetString(index, "11");
} catch (DicomException) {
try {
attrib.SetString(index, "1111");
} catch (DicomException) {
try {
attrib.SetString(index, "111111");
} catch (DicomException) {
try {
attrib.SetString(index, "11111111");
} catch (DicomException) {
try {
attrib.SetStringValue("asdf");
} catch (DicomException) {
try {
DicomSequenceItem item = new DicomSequenceItem();
attrib.AddSequenceItem(item);
item[DicomTags.InstanceNumber].SetString(index, "1");
} catch (DicomException) {
Assert.Fail("Test case deficiency: doesn't know how to set an attribute of VR {0}", attrib.Tag.VR.Name);
}
}
}
}
}
}
}
}
}
}
}
}
}
}
private object CheckAttributeCollection(DicomAttribute attrib)
{
if (attrib.IsEmpty || attrib.IsNull)
return null;
if (attrib.Tag.VR.Equals(DicomVr.SLvr))
return attrib.GetInt32(0, 0);
if (attrib.Tag.VR.Equals(DicomVr.SSvr))
return attrib.GetInt16(0, 0);
if (attrib.Tag.VR.Equals(DicomVr.ATvr) || attrib.Tag.VR.Equals(DicomVr.ULvr))
return attrib.GetUInt32(0, 0);
if (attrib.Tag.VR.Equals(DicomVr.DSvr) || attrib.Tag.VR.Equals(DicomVr.FDvr))
return attrib.GetFloat64(0, 0f);
if (attrib.Tag.VR.Equals(DicomVr.FLvr))
return attrib.GetFloat32(0, 0f);
if (attrib.Tag.VR.Equals(DicomVr.ISvr))
return attrib.GetInt64(0, 0);
if (attrib.Tag.VR.Equals(DicomVr.USvr))
return attrib.GetUInt16(0, 0);
if (attrib.Tag.VR.Equals(DicomVr.SLvr))
return attrib.GetInt32(0, 0);
if (attrib.Tag.VR.Equals(DicomVr.OBvr)
|| attrib.Tag.VR.Equals(DicomVr.OWvr)
|| attrib.Tag.VR.Equals(DicomVr.OFvr)
|| attrib.Tag.VR.Equals(DicomVr.ODvr))
return attrib.StreamLength.ToString(CultureInfo.InvariantCulture);
return attrib.ToString().Trim();
}
/// <summary>
/// Temporary workaround code in place of DicomAttribute.SetDateTime(0, value) which can throw a IndexOutOfRangeException if attribute is null
/// </summary>
/// <param name="attrib"></param>
/// <param name="value"></param>
public static void SetTime(DicomAttribute attrib, DateTime? value) {
//TODO - replace this with DicomAttribute.SetDateTime(0, value) when it is fixed (ticket #1411)
if (value.HasValue)
attrib.SetString(0, string.Format(TimeParser.DicomFullTimeFormat, value.Value));
else
attrib.SetNullValue();
}
/// <summary>
/// Return an instance of the TMStringValidator object
/// Note: the returned object may be shared among threads or objects.
/// </summary>
/// <param name="attribute"></param>
/// <returns></returns>
/// <remarks>
///
///</remarks>
public static TMStringValidator GetInstance(DicomAttribute attribute)
{
lock (_mutex)
{
int key = GetKey(attribute);
TMStringValidator validator = _map[key] as TMStringValidator;
if (validator == null)
{
validator = new TMStringValidator();
_map[key] = validator;
}
return validator;
}
}
private static IEnumerable<DicomAttributeCollection> GetSubCollections(DicomAttribute attribute)
{
if (attribute is DicomAttributeSQ && attribute.Values != null)
{
DicomSequenceItem[] sequenceItems = (DicomSequenceItem[]) attribute.Values;
foreach (DicomSequenceItem sequenceItem in sequenceItems)
yield return sequenceItem;
}
}
private void RemapUidAttribute(DicomAttribute attribute)
{
int i = 0;
foreach (string oldUid in (string[]) attribute.Values)
{
if (!String.IsNullOrEmpty(oldUid))
{
string newUid;
if (_uidMap.ContainsKey(oldUid))
{
newUid = _uidMap[oldUid];
}
else
{
newUid = DicomUid.GenerateUid().UID;
if (String.IsNullOrEmpty(newUid) || newUid == oldUid)
throw new DicomAnonymizerException("An error occurred while generating a new Uid.");
_uidMap[oldUid] = newUid;
}
attribute.SetString(i++, newUid);
}
}
}
/// <summary>
/// Sets the specified date attribute values based on the specified <paramref name="value">Date value</paramref>.
/// </summary>
/// <param name="value">The value.</param>
/// <param name="dateAttribute">The date attribute.</param>
public static void SetDateAttributeValues(DateTime? value, DicomAttribute dateAttribute)
{
if (value.HasValue)
{
dateAttribute.SetDateTime(0, value.Value);
}
else
{
dateAttribute.SetNullValue();
}
}
private void AdjustDateTimeAttribute(DicomAttribute attribute)
{
if (_studyDateDifference != null)
{
int i = 0;
if (attribute is DicomAttributeDA)
{
foreach (string date in (string[]) attribute.Values)
attribute.SetString(i++, AdjustDate(date, _studyDateDifference.Value));
}
else if (attribute is DicomAttributeDT)
{
foreach (string datetime in (string[]) attribute.Values)
attribute.SetString(i++, AdjustDateTime(datetime, _studyDateDifference.Value));
}
}
else
{
//remove it altogether.
attribute.SetNullValue();
}
}
private static string ReadSequenceItem(DicomAttribute attribute, int index)
{
if (attribute is DicomAttributeSQ)
return (((DicomAttributeSQ) attribute)[index])[DicomTags.TextValue].ToString();
return null;
}
private static StudyXmlTagInclusion AttributeShouldBeIncluded(DicomAttribute attribute, StudyXmlOutputSettings settings)
{
if (settings == null)
return StudyXmlTagInclusion.IncludeTagValue;
if (attribute is DicomAttributeSQ)
{
if (attribute.Tag.IsPrivate)
return settings.IncludePrivateValues;
return StudyXmlTagInclusion.IncludeTagValue;
}
// private tag
if (attribute.Tag.IsPrivate)
{
if (settings.IncludePrivateValues != StudyXmlTagInclusion.IncludeTagValue)
return settings.IncludePrivateValues;
}
// check type
if (attribute is DicomAttributeUN)
{
if (settings.IncludeUnknownTags != StudyXmlTagInclusion.IncludeTagValue)
return settings.IncludeUnknownTags;
}
// This check isn't needed, but it bypasses the StreamLength calculation if its not needed
if (settings.IncludeLargeTags == StudyXmlTagInclusion.IncludeTagValue)
return settings.IncludeLargeTags;
// check the size
ulong length = attribute.StreamLength;
if (length <= settings.MaxTagLength)
return StudyXmlTagInclusion.IncludeTagValue;
// Move here, such that we first check if the tag should be excluded
if ((attribute is DicomAttributeOB)
|| (attribute is DicomAttributeOW)
|| (attribute is DicomAttributeOF)
|| (attribute is DicomFragmentSequence))
return StudyXmlTagInclusion.IncludeTagExclusion;
return settings.IncludeLargeTags;
}