public static void MultiFrameProcess(DbStudy study)
{
string dcmPath = ADCM.GetStoreString();
var seriesList = Directory.GetDirectories(Path.Combine(dcmPath, study.study_uid));
foreach (var sePath in seriesList)
{
var filesList = Directory.GetFiles(sePath, "*.dcm");
if (filesList.Length < 2)
continue;
for (int i = 0; i < filesList.Length; i++)
{
var dcm = new DicomFile(filesList[i]);
dcm.Load();
int frameCount = dcm.DataSet[DicomTags.NumberOfFrames].GetInt16(0, 0);
if (frameCount > 1)
{
string newSeriesUID = sePath + "." + i;
newSeriesUID = newSeriesUID.Substring(newSeriesUID.LastIndexOf(Path.DirectorySeparatorChar) + 1);
string newSeriesPath = Path.Combine(dcmPath, study.study_uid, newSeriesUID);
Directory.CreateDirectory(newSeriesPath);
string fileName = Path.GetFileName(filesList[i]);
string oldPath = filesList[i];
string newPath = Path.Combine(newSeriesPath, fileName);
File.Move(filesList[i], Path.Combine(newSeriesPath, fileName));
}
}
}
foreach (string sePath in seriesList)
{
var filesCount = Directory.GetFiles(sePath);
if (filesCount.Length < 1)
Directory.Delete(sePath);
}
}
public static void OptiPng(DbStudy study)
{
string dcmPath = ADCM.GetStoreString();
foreach (var ser in study.series)
{
string outputPath = Path.Combine(dcmPath, "OUTPUT", study.case_id, study.study_uid, ser.series_uid);
if (Directory.Exists(outputPath))
{
var pngs = Directory.GetFiles(outputPath, "*.png");
if (pngs == null || pngs.Length < 1)
{
continue;
}
foreach (var f in pngs)
{
if (File.Exists(@".\OptiPNG\optipng.exe"))
{
// Run OPTIPNG with level 7 compression.
System.Diagnostics.ProcessStartInfo info = new System.Diagnostics.ProcessStartInfo();
info.FileName = @".\OptiPNG\optipng.exe";
info.WindowStyle = System.Diagnostics.ProcessWindowStyle.Hidden;
info.Arguments = "\"" + f + "\"";
// Use Process for the application.
using (System.Diagnostics.Process exe = System.Diagnostics.Process.Start(info))
{
exe.WaitForExit();
}
}
}
}
}
}
public static bool ZipSeries(DbStudy study)
{
try
{
string scpPath = ADCM.GetStoreString();
string outputPath = Path.Combine(scpPath, "OUTPUT", study.case_id, study.study_uid);
if (!Directory.Exists(outputPath))
{
throw new Exception("Output path not found: " + outputPath);
}
var seriesPaths = Directory.GetDirectories(outputPath);
foreach (var s in seriesPaths)
{
//ReorderImages(s);
var seriesUID = s.Substring(s.LastIndexOf(Path.DirectorySeparatorChar) + 1);
string zipPath = Path.Combine(outputPath, seriesUID + ".zip");
using (ZipFile zip = new ZipFile())
{
zip.CompressionLevel = Ionic.Zlib.CompressionLevel.BestSpeed;
zip.AddDirectory(s);
zip.Save(zipPath);
}
FileInfo zipInfo = new FileInfo(zipPath);
double megabytes = Math.Round((zipInfo.Length / 1024f) / 1024f, 2);
LOG.Write("Zip created: " + zipInfo.Name + ", " + megabytes + " MB");
LOG.InsertEvent("Zip created: " + zipInfo.Name + " - " + megabytes + "MB", "IMG", null, study.case_id, study.study_uid, seriesUID);
System.Threading.Thread.Sleep(500);
}
LOG.InsertEvent("Successfully created ZIP files for all series in study", "IMG", null, study.case_id, study.study_uid);
return(true);
}
catch (Exception ex)
{
string errorString = "Error at :" + System.Reflection.MethodBase.GetCurrentMethod().Name;
LOG.Write(errorString);
LOG.Write(ex.Message);
LOG.InsertEvent(errorString, "IMG", ex.Message, study.case_id, study.study_uid);
return(false);
}
}
public static void MultiFrameProcess(DbStudy study)
{
string dcmPath = ADCM.GetStoreString();
var seriesList = Directory.GetDirectories(Path.Combine(dcmPath, study.study_uid));
foreach (var sePath in seriesList)
{
var filesList = Directory.GetFiles(sePath, "*.dcm");
if (filesList.Length < 2)
{
continue;
}
for (int i = 0; i < filesList.Length; i++)
{
var dcm = new DicomFile(filesList[i]);
dcm.Load();
int frameCount = dcm.DataSet[DicomTags.NumberOfFrames].GetInt16(0, 0);
if (frameCount > 1)
{
string newSeriesUID = sePath + "." + i;
newSeriesUID = newSeriesUID.Substring(newSeriesUID.LastIndexOf(Path.DirectorySeparatorChar) + 1);
string newSeriesPath = Path.Combine(dcmPath, study.study_uid, newSeriesUID);
Directory.CreateDirectory(newSeriesPath);
string fileName = Path.GetFileName(filesList[i]);
string oldPath = filesList[i];
string newPath = Path.Combine(newSeriesPath, fileName);
File.Move(filesList[i], Path.Combine(newSeriesPath, fileName));
}
}
}
foreach (string sePath in seriesList)
{
var filesCount = Directory.GetFiles(sePath);
if (filesCount.Length < 1)
{
Directory.Delete(sePath);
}
}
}
public static bool DownloadStudy(DbStudy study, int retryCount = 0)
{
foreach (var se in study.series)
{
bool success = DownloadOneSeries(study.study_uid, se.series_uid);
if (!success)
{
return(false);
}
}
return(true);
//LOG.Write(string.Format("Downloading study [{0}] - {1} ({2})", study.modality, study.description, study.images));
//LOG.Write("Retry Count: " + retryCount);
//var node = GetSelectedNode();
//var cstore = new DicomSCP(node.LocalAe, 104);
//StudyRootFindScu findScu = new StudyRootFindScu();
//StudyQueryIod queryMessage = new StudyQueryIod();
//queryMessage.SetCommonTags();
//queryMessage.StudyInstanceUid = study.study_uid;
//IList<StudyQueryIod> results = findScu.Find(node.LocalAe, node.AET, node.IP, node.Port, queryMessage);
//if (results.Count != 1)
// throw new Exception(string.Format("Unable to query study on PACS: [{0}]", study.study_uid));
//if (!System.IO.Directory.Exists(node.LocalStorage))
// System.IO.Directory.CreateDirectory(node.LocalStorage);
//cstore.Start();
//while (!cstore.IsRunning)
// System.Threading.Thread.Sleep(1000);
//string singleSeriesOnly = System.Configuration.ConfigurationManager.AppSettings["singleSeries"];
//MoveScuBase moveScu = new StudyRootMoveScu(node.LocalAe, node.AET, node.IP, node.Port, node.LocalAe);
//moveScu.ReadTimeout = 600000;
//moveScu.WriteTimeout = 600000;
//moveScu.AddStudyInstanceUid(study.study_uid);
//foreach (var se in study.series)
//{
// moveScu.AddSeriesInstanceUid(se.series_uid);
// System.Diagnostics.Debug.WriteLine(se.series_uid);
//}
//moveScu.Move();
//System.Threading.Thread.Sleep(2000);
//if (moveScu.Status == ScuOperationStatus.AssociationRejected || moveScu.Status == ScuOperationStatus.Canceled ||
// moveScu.Status == ScuOperationStatus.ConnectFailed || moveScu.Status == ScuOperationStatus.Failed ||
// moveScu.Status == ScuOperationStatus.NetworkError || moveScu.Status == ScuOperationStatus.TimeoutExpired ||
// moveScu.Status == ScuOperationStatus.UnexpectedMessage || moveScu.FailureSubOperations != 0)
//{
// if (retryCount > 4)
// throw new Exception(string.Format("Failed moving study [{0}] | Status : {1} | Failed Operations: {2}", study.study_uid, moveScu.Status, moveScu.FailureSubOperations));
// retryCount += 1;
// if (cstore.IsRunning)
// cstore.Stop();
// DownloadStudy(study, retryCount);
//}
//else
//{
// System.Threading.Thread.Sleep(2000);
// cstore.Stop();
//}
//if (cstore.IsRunning)
// cstore.Stop();
//LOG.InsertEvent("Successfully downloaded study: " + study.description, "DICOM", null, study.case_id, study.study_uid);
//return true;
try
{
}
catch (Exception ex)
{
string errorString = "Error at :" + System.Reflection.MethodBase.GetCurrentMethod().Name;
LOG.Write(errorString);
LOG.Write(ex.Message);
LOG.InsertEvent(errorString, "DICOM", ex.Message, study.case_id, study.study_uid);
return(false);
}
}
public static bool ConvertDcmToPng(DbStudy study)
{
try
{
string dcmPath = ADCM.GetStoreString();
string studyPath = Path.Combine(dcmPath, study.study_uid);
if (!Directory.Exists(studyPath))
{
throw new Exception("Study path not found");
}
var allSeriesPaths = Directory.GetDirectories(studyPath);
if (allSeriesPaths.Length < 1)
{
throw new Exception("No series subdirectories");
}
foreach (var s in allSeriesPaths)
{
var dcmFiles = Directory.GetFiles(s, "*.dcm");
if (dcmFiles.Length < 1)
{
throw new Exception("No DCM files inside series path: " + s);
}
DicomFile tempdcm = new DicomFile(dcmFiles[0]);
tempdcm.Load();
var seriesName = tempdcm.DataSet[DicomTags.SeriesDescription].GetString(0, null);
var seriesUID = s.Substring(s.LastIndexOf(Path.DirectorySeparatorChar) + 1);
if (string.IsNullOrEmpty(seriesName))
{
seriesName = "Unamed_Series";
}
APetaPoco.SetConnectionString("cn1");
var bm = APetaPoco.PpRetrieveOne <DbSeries>("Series", "[case_id] = '" + study.case_id + "' AND [series_uid] = '" + seriesUID + "'");
DbSeries dbseries = null;
if (bm.Success)
{
dbseries = (DbSeries)bm.Data;
}
string outputPath = Path.Combine(dcmPath, "OUTPUT", study.case_id, study.study_uid, seriesUID);
if (!Directory.Exists(outputPath))
{
Directory.CreateDirectory(outputPath);
}
//int fileCount = 0;
for (int k = 0; k < dcmFiles.Length; k++)
{
DicomFile dcmFile = new DicomFile(dcmFiles[k]);
dcmFile.Load();
int fileCount = 0;
var windowWidth = dcmFile.DataSet[DicomTags.WindowWidth].ToString();
if (!string.IsNullOrEmpty(windowWidth))
{
var tempSplitString = windowWidth.Split('\\');
windowWidth = tempSplitString[0];
}
var windowCenter = dcmFile.DataSet[DicomTags.WindowCenter].ToString();
if (!string.IsNullOrEmpty(windowCenter))
{
var tempSplitString = windowCenter.Split('\\');
windowCenter = tempSplitString[0];
}
var ww = dcmFile.DataSet[DicomTags.WindowWidth].GetFloat32(0, 0);
var wc = dcmFile.DataSet[DicomTags.WindowCenter].GetFloat32(0, 0);
if (ww == 0 && !string.IsNullOrEmpty(windowWidth))
{
if (windowWidth.Contains("."))
{
var tempSplitString = windowWidth.Split('.');
ww = int.Parse(tempSplitString[0]);
}
else
{
ww = int.Parse(windowWidth);
}
}
if (wc == 0 && !string.IsNullOrEmpty(windowCenter))
{
if (windowCenter.Contains("."))
{
var tempSplitString = windowCenter.Split('.');
wc = int.Parse(tempSplitString[0]);
}
else
{
wc = int.Parse(windowCenter);
}
}
LocalSopDataSource localds = new LocalSopDataSource(dcmFile);
if (!localds.IsImage)
{
continue;
}
ImageSop sop = new ImageSop(localds);
int frameCount = sop.Frames.Count;
var fileName = dcmFile.DataSet[DicomTags.InstanceNumber].GetInt16(0, 0);
if (frameCount > 1)
{
for (int j = 1; j <= frameCount; j++)
{
GC.Collect();
Frame f = sop.Frames[j];
var jpgPath = Path.Combine(outputPath, fileName + "." + j + ".png");
Bitmap bmp = null;
if (string.IsNullOrEmpty(windowWidth) || string.IsNullOrEmpty(windowCenter))
{
bmp = DrawDefaultFrame(f);
}
else
{
bmp = DrawLutFrame(f, ww, wc);
}
if (bmp != null)
{
if (dbseries != null && dbseries.crop_h != null &&
dbseries.crop_w != null &&
dbseries.crop_x != null &&
dbseries.crop_y != null)
{
bmp = Crop(bmp, dbseries.crop_x.Value, dbseries.crop_y.Value, dbseries.crop_w.Value, dbseries.crop_h.Value);
}
SaveImage(bmp, jpgPath);
}
fileCount += 1;
GC.Collect();
}
}
else
{
GC.Collect();
var jpgPath = Path.Combine(outputPath, fileName + ".png");
Frame f = sop.Frames[1];
Bitmap bmp = null;
if (string.IsNullOrEmpty(windowWidth) || string.IsNullOrEmpty(windowCenter))
{
bmp = DrawDefaultFrame(f);
}
else
{
bmp = DrawLutFrame(f, ww, wc);
}
if (bmp != null)
{
if (dbseries != null && dbseries.crop_h != null &&
dbseries.crop_w != null &&
dbseries.crop_x != null &&
dbseries.crop_y != null)
{
bmp = Crop(bmp, dbseries.crop_x.Value, dbseries.crop_y.Value, dbseries.crop_w.Value, dbseries.crop_h.Value);
}
SaveImage(bmp, jpgPath);
}
fileCount += 1;
GC.Collect();
}
}
}
LOG.InsertEvent("Successfully converted study from DCM to PNG", "IMG", null, study.case_id, study.study_uid);
return(true);
}
catch (Exception ex)
{
string errorString = "Error at :" + System.Reflection.MethodBase.GetCurrentMethod().Name;
LOG.Write(errorString);
LOG.Write(ex.Message);
LOG.InsertEvent(errorString, "IMG", ex.Message, study.case_id, study.study_uid);
return(false);
}
}
public static void DeleteExcessImages(DbStudy study)
{
try
{
string dcmPath = ADCM.GetStoreString();
string outputPath = Path.Combine(dcmPath, "OUTPUT", study.case_id, study.study_uid);
if (!Directory.Exists(outputPath))
{
throw new Exception("No output path found: " + outputPath);
}
foreach (var ser in study.series)
{
string serPath = Path.Combine(outputPath, ser.series_uid);
if (Directory.Exists(serPath))
{
var sortedList = Directory.GetFiles(serPath, "*.png").OrderBy(f => int.Parse(Path.GetFileNameWithoutExtension(f))).ToList();
if (sortedList.Count > ser.images)
{
int start = 1;
int end = ser.images;
int stepping = 1;
if (ser.start_image != null && ser.start_image > 0)
{
start = ser.start_image.Value;
}
if (ser.end_image != null && ser.end_image > 0)
{
end = ser.end_image.Value;
}
if (end > sortedList.Count)
{
end = sortedList.Count;
}
if (ser.every_image != null && ser.every_image > 0)
{
stepping = ser.every_image.Value;
}
List <string> keepPaths = new List <string>();
LOG.Write(string.Format("Start: {0}| End: {1}| Stepping: {2}", start, end, stepping));
for (int i = start - 1; i < end; i += stepping)
{
//LOG.Write(string.Format("[{0}] Keeping {1}", i, sortedList[i]));
keepPaths.Add(sortedList[i]);
}
foreach (var f in sortedList)
{
if (!keepPaths.Contains(f))
{
//LOG.Write(string.Format("Deleting {0}", f));
File.Delete(f);
}
}
}
}
else
{
LOG.Write("No series path: " + serPath);
}
}
}
catch (Exception ex)
{
LOG.Write(ex.Message);
}
}
public static bool DownloadStudy(DbStudy study, int retryCount = 0)
{
foreach(var se in study.series)
{
bool success = DownloadOneSeries(study.study_uid, se.series_uid);
if (!success) { return false; }
}
return true;
//LOG.Write(string.Format("Downloading study [{0}] - {1} ({2})", study.modality, study.description, study.images));
//LOG.Write("Retry Count: " + retryCount);
//var node = GetSelectedNode();
//var cstore = new DicomSCP(node.LocalAe, 104);
//StudyRootFindScu findScu = new StudyRootFindScu();
//StudyQueryIod queryMessage = new StudyQueryIod();
//queryMessage.SetCommonTags();
//queryMessage.StudyInstanceUid = study.study_uid;
//IList<StudyQueryIod> results = findScu.Find(node.LocalAe, node.AET, node.IP, node.Port, queryMessage);
//if (results.Count != 1)
// throw new Exception(string.Format("Unable to query study on PACS: [{0}]", study.study_uid));
//if (!System.IO.Directory.Exists(node.LocalStorage))
// System.IO.Directory.CreateDirectory(node.LocalStorage);
//cstore.Start();
//while (!cstore.IsRunning)
// System.Threading.Thread.Sleep(1000);
//string singleSeriesOnly = System.Configuration.ConfigurationManager.AppSettings["singleSeries"];
//MoveScuBase moveScu = new StudyRootMoveScu(node.LocalAe, node.AET, node.IP, node.Port, node.LocalAe);
//moveScu.ReadTimeout = 600000;
//moveScu.WriteTimeout = 600000;
//moveScu.AddStudyInstanceUid(study.study_uid);
//foreach (var se in study.series)
//{
// moveScu.AddSeriesInstanceUid(se.series_uid);
// System.Diagnostics.Debug.WriteLine(se.series_uid);
//}
//moveScu.Move();
//System.Threading.Thread.Sleep(2000);
//if (moveScu.Status == ScuOperationStatus.AssociationRejected || moveScu.Status == ScuOperationStatus.Canceled ||
// moveScu.Status == ScuOperationStatus.ConnectFailed || moveScu.Status == ScuOperationStatus.Failed ||
// moveScu.Status == ScuOperationStatus.NetworkError || moveScu.Status == ScuOperationStatus.TimeoutExpired ||
// moveScu.Status == ScuOperationStatus.UnexpectedMessage || moveScu.FailureSubOperations != 0)
//{
// if (retryCount > 4)
// throw new Exception(string.Format("Failed moving study [{0}] | Status : {1} | Failed Operations: {2}", study.study_uid, moveScu.Status, moveScu.FailureSubOperations));
// retryCount += 1;
// if (cstore.IsRunning)
// cstore.Stop();
// DownloadStudy(study, retryCount);
//}
//else
//{
// System.Threading.Thread.Sleep(2000);
// cstore.Stop();
//}
//if (cstore.IsRunning)
// cstore.Stop();
//LOG.InsertEvent("Successfully downloaded study: " + study.description, "DICOM", null, study.case_id, study.study_uid);
//return true;
try
{
}
catch (Exception ex)
{
string errorString = "Error at :" + System.Reflection.MethodBase.GetCurrentMethod().Name;
LOG.Write(errorString);
LOG.Write(ex.Message);
LOG.InsertEvent(errorString, "DICOM", ex.Message, study.case_id, study.study_uid);
return false;
}
}
public static void InsertNewCase(HttpContext context)
{
string caseId = "";
var bm = new BoolMessage();
bm.Data = null;
try
{
var upCasePackage = AF.GetObjectFromJSON<UploadPackage>(context);
if (upCasePackage == null || upCasePackage == default(UploadPackage))
{
throw new Exception("Unable to parse incoming package");
}
APetaPoco.SetConnectionString("cn1");
caseId = DateTime.Now.ToString("yyyyMMddHHmmss") + "_" + upCasePackage.username;
var dCase = new DbCase();
dCase.age = upCasePackage.case_details.age;
dCase.body = upCasePackage.case_details.body;
dCase.case_id = caseId;
dCase.date = DateTime.Now;
dCase.diagnostic_certainty_id = upCasePackage.case_details.diagnostic_certainty_id;
dCase.presentation = upCasePackage.case_details.presentation;
dCase.status = "PENDING";
dCase.status_message = "Inserted via Uploader UI";
dCase.suitable_for_quiz = upCasePackage.case_details.suitable_for_quiz;
dCase.system_id = upCasePackage.case_details.system_id;
dCase.title = upCasePackage.case_details.title;
dCase.username = upCasePackage.username;
bm = APetaPoco.PpInsert(dCase);
if (!bm.Success) { throw new Exception("Unable to insert case"); }
foreach (var st in upCasePackage.studies)
{
var dcmSt = ADCM.GetStudyFromStudyUid(st.study_uid);
var dSt = new DbStudy();
dSt.caption = st.caption;
dSt.case_id = caseId;
DateTime dt;
bool dtp = DateTime.TryParseExact(st.date, "dd/MM/yyyy HH:mm", System.Globalization.CultureInfo.InvariantCulture, System.Globalization.DateTimeStyles.None, out dt);
if (dtp) { dSt.date = dt; }
if(dcmSt != null && dcmSt != default(Study))
{
dSt.patient_dob = dcmSt.PatientDob;
dSt.patient_id = dcmSt.PatientId;
dSt.patient_name = dcmSt.PatientSurname.ToUpper() + ", " + dcmSt.PatientFirstname;
}
dSt.description = st.description;
dSt.findings = st.findings;
dSt.images = st.images;
dSt.modality = st.modality;
dSt.position = st.position;
dSt.study_uid = st.study_uid;
bm = APetaPoco.PpInsert(dSt);
if (!bm.Success) { throw new Exception("Unable to insert study"); }
foreach (var se in st.series)
{
var dSe = new DbSeries();
dSe.case_id = caseId;
dSe.description = se.description;
dSe.images = se.images;
dSe.series_uid = se.series_uid;
dSe.study_uid = st.study_uid;
dSe.crop_h = se.crop_h;
dSe.crop_w = se.crop_w;
dSe.crop_x = se.crop_x;
dSe.crop_y = se.crop_y;
dSe.window_wc = se.window_wc;
dSe.window_ww = se.window_ww;
dSe.end_image = se.end_image;
dSe.every_image = se.every_image;
dSe.start_image = se.start_image;
bm = APetaPoco.PpInsert(dSe);
if (!bm.Success) { throw new Exception("Unable to insert series"); }
}
}
InsertEvent("Successfully inserted case into database:\n" + caseId, "WEB", Newtonsoft.Json.JsonConvert.SerializeObject(dCase), dCase.case_id);
bm.Success = true;
bm.Data = null;
bm.Message = "Successfully inserted case into database";
AF.BoolMessageRespond(context, bm);
}
catch (System.Threading.ThreadAbortException) { return; }
catch (Exception ex)
{
if (!string.IsNullOrEmpty(caseId)) { ClearAllInDbWithCaseId(caseId); }
AF.ExceptionRespond(context, ex);
}
}
public static bool ConvertDcmToPng(DbStudy study)
{
try
{
string dcmPath = ADCM.GetStoreString();
string studyPath = Path.Combine(dcmPath, study.study_uid);
if (!Directory.Exists(studyPath))
throw new Exception("Study path not found");
var allSeriesPaths = Directory.GetDirectories(studyPath);
if (allSeriesPaths.Length < 1)
throw new Exception("No series subdirectories");
foreach (var s in allSeriesPaths)
{
var dcmFiles = Directory.GetFiles(s, "*.dcm");
if (dcmFiles.Length < 1)
throw new Exception("No DCM files inside series path: " + s);
DicomFile tempdcm = new DicomFile(dcmFiles[0]);
tempdcm.Load();
var seriesName = tempdcm.DataSet[DicomTags.SeriesDescription].GetString(0, null);
var seriesUID = s.Substring(s.LastIndexOf(Path.DirectorySeparatorChar) + 1);
if (string.IsNullOrEmpty(seriesName))
seriesName = "Unamed_Series";
APetaPoco.SetConnectionString("cn1");
var bm = APetaPoco.PpRetrieveOne<DbSeries>("Series", "[case_id] = '" + study.case_id + "' AND [series_uid] = '" + seriesUID + "'");
DbSeries dbseries = null;
if (bm.Success) { dbseries = (DbSeries)bm.Data; }
string outputPath = Path.Combine(dcmPath, "OUTPUT", study.case_id, study.study_uid, seriesUID);
if (!Directory.Exists(outputPath))
Directory.CreateDirectory(outputPath);
//int fileCount = 0;
for (int k = 0; k < dcmFiles.Length; k++)
{
DicomFile dcmFile = new DicomFile(dcmFiles[k]);
dcmFile.Load();
int fileCount = 0;
var windowWidth = dcmFile.DataSet[DicomTags.WindowWidth].ToString();
if (!string.IsNullOrEmpty(windowWidth))
{
var tempSplitString = windowWidth.Split('\\');
windowWidth = tempSplitString[0];
}
var windowCenter = dcmFile.DataSet[DicomTags.WindowCenter].ToString();
if (!string.IsNullOrEmpty(windowCenter))
{
var tempSplitString = windowCenter.Split('\\');
windowCenter = tempSplitString[0];
}
var ww = dcmFile.DataSet[DicomTags.WindowWidth].GetFloat32(0, 0);
var wc = dcmFile.DataSet[DicomTags.WindowCenter].GetFloat32(0, 0);
if (ww == 0 && !string.IsNullOrEmpty(windowWidth))
{
if (windowWidth.Contains("."))
{
var tempSplitString = windowWidth.Split('.');
ww = int.Parse(tempSplitString[0]);
}
else
{
ww = int.Parse(windowWidth);
}
}
if (wc == 0 && !string.IsNullOrEmpty(windowCenter))
{
if (windowCenter.Contains("."))
{
var tempSplitString = windowCenter.Split('.');
wc = int.Parse(tempSplitString[0]);
}
else
{
wc = int.Parse(windowCenter);
}
}
LocalSopDataSource localds = new LocalSopDataSource(dcmFile);
if (!localds.IsImage) { continue; }
ImageSop sop = new ImageSop(localds);
int frameCount = sop.Frames.Count;
var fileName = dcmFile.DataSet[DicomTags.InstanceNumber].GetInt16(0, 0);
if (frameCount > 1)
{
for (int j = 1; j <= frameCount; j++)
{
GC.Collect();
Frame f = sop.Frames[j];
var jpgPath = Path.Combine(outputPath, fileName + "." + j + ".png");
Bitmap bmp = null;
if (string.IsNullOrEmpty(windowWidth) || string.IsNullOrEmpty(windowCenter))
{
bmp = DrawDefaultFrame(f);
}
else
{
bmp = DrawLutFrame(f, ww, wc);
}
if (bmp != null)
{
if(dbseries != null && dbseries.crop_h != null
&& dbseries.crop_w != null
&& dbseries.crop_x != null
&& dbseries.crop_y != null)
{
bmp = Crop(bmp, dbseries.crop_x.Value, dbseries.crop_y.Value, dbseries.crop_w.Value, dbseries.crop_h.Value);
}
SaveImage(bmp, jpgPath);
}
fileCount += 1;
GC.Collect();
}
}
else
{
GC.Collect();
var jpgPath = Path.Combine(outputPath, fileName + ".png");
Frame f = sop.Frames[1];
Bitmap bmp = null;
if (string.IsNullOrEmpty(windowWidth) || string.IsNullOrEmpty(windowCenter))
{
bmp = DrawDefaultFrame(f);
}
else
{
bmp = DrawLutFrame(f, ww, wc);
}
if (bmp != null)
{
if (dbseries != null && dbseries.crop_h != null
&& dbseries.crop_w != null
&& dbseries.crop_x != null
&& dbseries.crop_y != null)
{
bmp = Crop(bmp, dbseries.crop_x.Value, dbseries.crop_y.Value, dbseries.crop_w.Value, dbseries.crop_h.Value);
}
SaveImage(bmp, jpgPath);
}
fileCount += 1;
GC.Collect();
}
}
}
LOG.InsertEvent("Successfully converted study from DCM to PNG", "IMG", null, study.case_id, study.study_uid);
return true;
}
catch (Exception ex)
{
string errorString = "Error at :" + System.Reflection.MethodBase.GetCurrentMethod().Name;
LOG.Write(errorString);
LOG.Write(ex.Message);
LOG.InsertEvent(errorString, "IMG", ex.Message, study.case_id, study.study_uid);
return false;
}
}
public static bool ZipSeries(DbStudy study)
{
try
{
string scpPath = ADCM.GetStoreString();
string outputPath = Path.Combine(scpPath, "OUTPUT", study.case_id, study.study_uid);
if (!Directory.Exists(outputPath))
throw new Exception("Output path not found: " + outputPath);
var seriesPaths = Directory.GetDirectories(outputPath);
foreach (var s in seriesPaths)
{
//ReorderImages(s);
var seriesUID = s.Substring(s.LastIndexOf(Path.DirectorySeparatorChar) + 1);
string zipPath = Path.Combine(outputPath, seriesUID + ".zip");
using (ZipFile zip = new ZipFile())
{
zip.CompressionLevel = Ionic.Zlib.CompressionLevel.BestSpeed;
zip.AddDirectory(s);
zip.Save(zipPath);
}
FileInfo zipInfo = new FileInfo(zipPath);
double megabytes = Math.Round((zipInfo.Length / 1024f) / 1024f, 2);
LOG.Write("Zip created: " + zipInfo.Name + ", " + megabytes + " MB");
LOG.InsertEvent("Zip created: " + zipInfo.Name + " - " + megabytes + "MB", "IMG", null, study.case_id, study.study_uid, seriesUID);
System.Threading.Thread.Sleep(500);
}
LOG.InsertEvent("Successfully created ZIP files for all series in study", "IMG", null, study.case_id, study.study_uid);
return true;
}
catch (Exception ex)
{
string errorString = "Error at :" + System.Reflection.MethodBase.GetCurrentMethod().Name;
LOG.Write(errorString);
LOG.Write(ex.Message);
LOG.InsertEvent(errorString, "IMG", ex.Message, study.case_id, study.study_uid);
return false;
}
}
public static void OptiPng(DbStudy study)
{
string dcmPath = ADCM.GetStoreString();
foreach(var ser in study.series)
{
string outputPath = Path.Combine(dcmPath, "OUTPUT", study.case_id, study.study_uid, ser.series_uid);
if (Directory.Exists(outputPath))
{
var pngs = Directory.GetFiles(outputPath, "*.png");
if(pngs == null || pngs.Length < 1) { continue; }
foreach (var f in pngs)
{
if (File.Exists(@".\OptiPNG\optipng.exe"))
{
// Run OPTIPNG with level 7 compression.
System.Diagnostics.ProcessStartInfo info = new System.Diagnostics.ProcessStartInfo();
info.FileName = @".\OptiPNG\optipng.exe";
info.WindowStyle = System.Diagnostics.ProcessWindowStyle.Hidden;
info.Arguments = "\"" + f + "\"";
// Use Process for the application.
using (System.Diagnostics.Process exe = System.Diagnostics.Process.Start(info))
{
exe.WaitForExit();
}
}
}
}
}
}
public static void DeleteExcessImages(DbStudy study)
{
try
{
string dcmPath = ADCM.GetStoreString();
string outputPath = Path.Combine(dcmPath, "OUTPUT", study.case_id, study.study_uid);
if (!Directory.Exists(outputPath)) { throw new Exception("No output path found: " + outputPath); }
foreach (var ser in study.series)
{
string serPath = Path.Combine(outputPath, ser.series_uid);
if (Directory.Exists(serPath))
{
var sortedList = Directory.GetFiles(serPath, "*.png").OrderBy(f => int.Parse(Path.GetFileNameWithoutExtension(f))).ToList();
if (sortedList.Count > ser.images)
{
int start = 1;
int end = ser.images;
int stepping = 1;
if (ser.start_image != null && ser.start_image > 0)
start = ser.start_image.Value;
if (ser.end_image != null && ser.end_image > 0)
end = ser.end_image.Value;
if (end > sortedList.Count)
end = sortedList.Count;
if (ser.every_image != null && ser.every_image > 0)
stepping = ser.every_image.Value;
List<string> keepPaths = new List<string>();
LOG.Write(string.Format("Start: {0}| End: {1}| Stepping: {2}", start, end, stepping));
for (int i = start - 1; i < end; i += stepping)
{
//LOG.Write(string.Format("[{0}] Keeping {1}", i, sortedList[i]));
keepPaths.Add(sortedList[i]);
}
foreach (var f in sortedList)
{
if (!keepPaths.Contains(f))
{
//LOG.Write(string.Format("Deleting {0}", f));
File.Delete(f);
}
}
}
}
else
{
LOG.Write("No series path: " + serPath);
}
}
}
catch(Exception ex)
{
LOG.Write(ex.Message);
}
}
private static List<DbSeries> GetDbSeriesForDbStudy(DbStudy study)
{
APetaPoco.SetConnectionString("cn1");
var bm = APetaPoco.PpRetrieveList<DbSeries>("Series", string.Format("[study_uid] = '{0}' AND [case_id] = '{1}'", study.study_uid, study.case_id));
if (!bm.Success) { return null; }
return (List<DbSeries>)bm.Data;
}
public static string CreateStudy(DbStudy dbstudy, string username, string caseId)
{
try
{
var ustudy = new StudyUpload();
ustudy.modality = GetModality(dbstudy.modality);
ustudy.caption = dbstudy.caption;
ustudy.findings = dbstudy.findings;
ustudy.position = dbstudy.position;
string postData = JsonConvert.SerializeObject(ustudy);
byte[] data = System.Text.Encoding.UTF8.GetBytes(postData);
string responseFromServer = null;
try
{
var api = ACFG.GetSiteApiDetails();
var user = AOA.GetUserRefreshIfNecessary(username, caseId);
WebRequest request = WebRequest.Create(api.cases_url + caseId + "/studies");
request.Method = "POST";
request.ContentType = "application/json";
request.Headers.Add("Authorization", "Bearer " + user.access_token);
Stream stream = request.GetRequestStream();
stream.Write(data, 0, data.Length);
stream.Close();
WebResponse response = request.GetResponse();
var dataStream = response.GetResponseStream();
System.IO.StreamReader reader = new System.IO.StreamReader(dataStream);
responseFromServer = reader.ReadToEnd();
reader.Close();
dataStream.Close();
response.Close();
}
catch (WebException ex)
{
using (var stream = ex.Response.GetResponseStream())
using (var reader = new StreamReader(stream))
{
string errorResponse = reader.ReadToEnd();
LOG.InsertEvent("Unable to create new study on Radiopedia server", "API", errorResponse, dbstudy.case_id, dbstudy.study_uid);
}
return(null);
}
catch (Exception ex)
{
string errorString = "Error at :" + System.Reflection.MethodBase.GetCurrentMethod().Name;
LOG.Write(errorString);
LOG.Write(ex.Message);
LOG.InsertEvent(errorString, "API", ex.Message, dbstudy.case_id, dbstudy.study_uid);
return(null);
}
var respObj = JsonConvert.DeserializeObject <StudyResponse>(responseFromServer);
dbstudy.r_study_id = respObj.id;
APetaPoco.SetConnectionString("cn1");
var bm = APetaPoco.PpUpdate(dbstudy);
if (!bm.Success)
{
throw new Exception("Unable to update Study in database");
}
LOG.InsertEvent("Successfully created new study:\n" + respObj.id, "API", responseFromServer, dbstudy.case_id, dbstudy.study_uid);
return(respObj.id);
}
catch (Exception ex)
{
string errorString = "Error at :" + System.Reflection.MethodBase.GetCurrentMethod().Name;
LOG.Write(errorString);
LOG.Write(ex.Message);
LOG.InsertEvent(errorString, "API", ex.Message, dbstudy.case_id, dbstudy.study_uid);
return(null);
}
finally { GC.Collect(); }
}
public static string CreateStudy(DbStudy dbstudy, string username, string caseId)
{
try
{
var ustudy = new StudyUpload();
ustudy.modality = GetModality(dbstudy.modality);
ustudy.caption = dbstudy.caption;
ustudy.findings = dbstudy.findings;
ustudy.position = dbstudy.position;
string postData = JsonConvert.SerializeObject(ustudy);
byte[] data = System.Text.Encoding.UTF8.GetBytes(postData);
string responseFromServer = null;
try
{
var api = ACFG.GetSiteApiDetails();
var user = AOA.GetUserRefreshIfNecessary(username, caseId);
WebRequest request = WebRequest.Create(api.cases_url + caseId + "/studies");
request.Method = "POST";
request.ContentType = "application/json";
request.Headers.Add("Authorization", "Bearer " + user.access_token);
Stream stream = request.GetRequestStream();
stream.Write(data, 0, data.Length);
stream.Close();
WebResponse response = request.GetResponse();
var dataStream = response.GetResponseStream();
System.IO.StreamReader reader = new System.IO.StreamReader(dataStream);
responseFromServer = reader.ReadToEnd();
reader.Close();
dataStream.Close();
response.Close();
}
catch (WebException ex)
{
using (var stream = ex.Response.GetResponseStream())
using (var reader = new StreamReader(stream))
{
string errorResponse = reader.ReadToEnd();
LOG.InsertEvent("Unable to create new study on Radiopedia server", "API", errorResponse, dbstudy.case_id, dbstudy.study_uid);
}
return null;
}
catch (Exception ex)
{
string errorString = "Error at :" + System.Reflection.MethodBase.GetCurrentMethod().Name;
LOG.Write(errorString);
LOG.Write(ex.Message);
LOG.InsertEvent(errorString, "API", ex.Message, dbstudy.case_id, dbstudy.study_uid);
return null;
}
var respObj = JsonConvert.DeserializeObject<StudyResponse>(responseFromServer);
dbstudy.r_study_id = respObj.id;
APetaPoco.SetConnectionString("cn1");
var bm = APetaPoco.PpUpdate(dbstudy);
if (!bm.Success)
throw new Exception("Unable to update Study in database");
LOG.InsertEvent("Successfully created new study:\n" + respObj.id, "API", responseFromServer, dbstudy.case_id, dbstudy.study_uid);
return respObj.id;
}
catch (Exception ex)
{
string errorString = "Error at :" + System.Reflection.MethodBase.GetCurrentMethod().Name;
LOG.Write(errorString);
LOG.Write(ex.Message);
LOG.InsertEvent(errorString, "API", ex.Message, dbstudy.case_id, dbstudy.study_uid);
return null;
}
finally { GC.Collect(); }
}