/// <summary>
/// Map the inbound place to a FHIR model
/// </summary>
protected override Location MapToFhir(Place model, WebOperationContext webOperationContext)
{
Location retVal = DataTypeConverter.CreateResource <Location>(model);
retVal.Identifier = model.Identifiers.Select(o => DataTypeConverter.ToFhirIdentifier <Entity>(o)).ToList();
// Map status
if (model.StatusConceptKey == StatusKeys.Active)
{
retVal.Status = LocationStatus.Active;
}
else if (model.StatusConceptKey == StatusKeys.Obsolete)
{
retVal.Status = LocationStatus.Inactive;
}
else
{
retVal.Status = LocationStatus.Suspended;
}
retVal.Name = model.LoadCollection <EntityName>("Names").FirstOrDefault(o => o.NameUseKey == NameUseKeys.OfficialRecord)?.LoadCollection <EntityNameComponent>("Component")?.FirstOrDefault()?.Value;
retVal.Alias = model.LoadCollection <EntityName>("Names").Where(o => o.NameUseKey != NameUseKeys.OfficialRecord)?.Select(n => (FhirString)n.LoadCollection <EntityNameComponent>("Component")?.FirstOrDefault()?.Value).ToList();
// Convert the determiner code
if (model.DeterminerConceptKey == DeterminerKeys.Described)
{
retVal.Mode = LocationMode.Kind;
}
else
{
retVal.Mode = LocationMode.Instance;
}
retVal.Type = DataTypeConverter.ToFhirCodeableConcept(model.LoadProperty <Concept>("TypeConcept"), "http://hl7.org/fhir/ValueSet/v3-ServiceDeliveryLocationRoleType");
retVal.Telecom = model.LoadCollection <EntityTelecomAddress>("Telecoms").Select(o => DataTypeConverter.ToFhirTelecom(o)).ToList();
retVal.Address = DataTypeConverter.ToFhirAddress(model.LoadCollection <EntityAddress>("Addresses").FirstOrDefault());
if (model.Lat.HasValue && model.Lng.HasValue)
{
retVal.Position = new MARC.HI.EHRS.SVC.Messaging.FHIR.Backbone.Position()
{
Latitude = (decimal)model.Lat.Value,
Longitude = (decimal)model.Lng.Value
}
}
;
// Part of?
var parent = model.LoadCollection <EntityRelationship>("Relationships").FirstOrDefault(o => o.RelationshipTypeKey == EntityRelationshipTypeKeys.Parent);
if (parent != null)
{
retVal.PartOf = DataTypeConverter.CreateReference <Location>(parent.LoadProperty <Entity>("TargetEntity"), webOperationContext);
}
return(retVal);
}
/// <summary>
/// Map this manufactured material to FHIR
/// </summary>
protected override Medication MapToFhir(ManufacturedMaterial model, RestOperationContext restOperationContext)
{
var retVal = DataTypeConverter.CreateResource <Medication>(model);
// Code of medication code
retVal.Code = DataTypeConverter.ToFhirCodeableConcept(model.LoadProperty <Concept>("TypeConcept"));
if (model.StatusConceptKey == StatusKeys.Active)
{
retVal.Status = SubstanceStatus.Active;
}
else if (model.StatusConceptKey == StatusKeys.Obsolete)
{
retVal.Status = SubstanceStatus.Inactive;
}
else if (model.StatusConceptKey == StatusKeys.Nullified)
{
retVal.Status = SubstanceStatus.Nullified;
}
// Is brand?
retVal.IsBrand = false;
retVal.IsOverTheCounter = model.Tags.Any(o => o.TagKey == "isOtc");
var manufacturer = model.LoadCollection <EntityRelationship>("Relationships").FirstOrDefault(o => o.RelationshipTypeKey == EntityRelationshipTypeKeys.WarrantedProduct);
if (manufacturer != null)
{
retVal.Manufacturer = DataTypeConverter.CreateReference <SanteDB.Messaging.FHIR.Resources.Organization>(manufacturer.LoadProperty <Entity>("TargetEntity"), restOperationContext);
}
// Form
retVal.Form = DataTypeConverter.ToFhirCodeableConcept(model.LoadProperty <Concept>("FormConcept"), "http://hl7.org/fhir/ValueSet/medication-form-codes");
retVal.Package = new SanteDB.Messaging.FHIR.Backbone.MedicationPackage();
retVal.Package.Batch = new SanteDB.Messaging.FHIR.Backbone.MedicationBatch()
{
LotNumber = model.LotNumber,
Expiration = model.ExpiryDate
};
// Picture of the object?
var photo = model.LoadCollection <EntityExtension>("Extensions").FirstOrDefault(o => o.ExtensionTypeKey == ExtensionTypeKeys.JpegPhotoExtension);
if (photo != null)
{
retVal.Image = new SanteDB.Messaging.FHIR.DataTypes.Attachment()
{
ContentType = "image/jpg",
Data = photo.ExtensionValueXml
}
}
;
return(retVal);
}
/// <summary>
/// Maps the specified act to an adverse event
/// </summary>
protected override AdverseEvent MapToFhir(Act model, WebOperationContext webOperationContext)
{
var retVal = DataTypeConverter.CreateResource <AdverseEvent>(model);
retVal.Identifier = DataTypeConverter.ToFhirIdentifier <Act>(model.Identifiers.FirstOrDefault());
retVal.Category = AdverseEventCategory.AdverseEvent;
retVal.Type = DataTypeConverter.ToFhirCodeableConcept(model.LoadProperty <Concept>("TypeConcept"));
var recordTarget = model.LoadCollection <ActParticipation>("Participations").FirstOrDefault(o => o.ParticipationRoleKey == ActParticipationKey.RecordTarget);
if (recordTarget != null)
{
retVal.Subject = DataTypeConverter.CreateReference <Patient>(recordTarget.LoadProperty <Entity>("PlayerEntity"), webOperationContext);
}
// Main topic of the concern
var subject = model.LoadCollection <ActRelationship>("Relationships").FirstOrDefault(o => o.RelationshipTypeKey == ActRelationshipTypeKeys.HasSubject)?.LoadProperty <Act>("TargetAct");
if (subject == null)
{
throw new InvalidOperationException("This act does not appear to be an adverse event");
}
retVal.Date = subject.ActTime.DateTime;
// Reactions = HasManifestation
var reactions = subject.LoadCollection <ActRelationship>("Relationships").Where(o => o.RelationshipTypeKey == ActRelationshipTypeKeys.HasManifestation);
retVal.Reaction = reactions.Select(o => DataTypeConverter.CreateReference <Condition>(o.LoadProperty <Act>("TargetAct"), webOperationContext)).ToList();
var location = model.LoadCollection <ActParticipation>("Participations").FirstOrDefault(o => o.ParticipationRoleKey == ActParticipationKey.Location);
if (location != null)
{
retVal.Location = DataTypeConverter.CreateReference <Location>(location.LoadProperty <Entity>("PlayerEntity"), webOperationContext);
}
// Severity
var severity = subject.LoadCollection <ActRelationship>("Relationships").First(o => o.RelationshipTypeKey == ActRelationshipTypeKeys.HasComponent && o.LoadProperty <Act>("TargetAct").TypeConceptKey == ObservationTypeKeys.Severity);
if (severity != null)
{
retVal.Seriousness = DataTypeConverter.ToFhirCodeableConcept(severity.LoadProperty <CodedObservation>("TargetAct").Value, "http://hl7.org/fhir/adverse-event-seriousness");
}
// Did the patient die?
var causeOfDeath = model.LoadCollection <ActRelationship>("Relationships").FirstOrDefault(o => o.RelationshipTypeKey == ActRelationshipTypeKeys.IsCauseOf && o.LoadProperty <Act>("TargetAct").TypeConceptKey == ObservationTypeKeys.ClinicalState && (o.TargetAct as CodedObservation)?.ValueKey == Guid.Parse("6df3720b-857f-4ba2-826f-b7f1d3c3adbb"));
if (causeOfDeath != null)
{
retVal.Outcome = new MARC.HI.EHRS.SVC.Messaging.FHIR.DataTypes.FhirCodeableConcept(new Uri("http://hl7.org/fhir/adverse-event-outcome"), "fatal");
}
else if (model.StatusConceptKey == StatusKeys.Active)
{
retVal.Outcome = new MARC.HI.EHRS.SVC.Messaging.FHIR.DataTypes.FhirCodeableConcept(new Uri("http://hl7.org/fhir/adverse-event-outcome"), "ongoing");
}
else if (model.StatusConceptKey == StatusKeys.Completed)
{
retVal.Outcome = new MARC.HI.EHRS.SVC.Messaging.FHIR.DataTypes.FhirCodeableConcept(new Uri("http://hl7.org/fhir/adverse-event-outcome"), "resolved");
}
var author = model.LoadCollection <ActParticipation>("Participations").FirstOrDefault(o => o.ParticipationRoleKey == ActParticipationKey.Authororiginator);
if (author != null)
{
retVal.Recorder = DataTypeConverter.CreatePlainReference <Practitioner>(author.LoadProperty <Entity>("PlayerEntity"), webOperationContext);
}
// Suspect entities
var refersTo = model.LoadCollection <ActRelationship>("Relationships").Where(o => o.RelationshipTypeKey == ActRelationshipTypeKeys.RefersTo);
if (refersTo.Count() > 0)
{
retVal.SuspectEntity = refersTo.Select(o => o.LoadProperty <Act>("TargetAct")).OfType <SubstanceAdministration>().Select(o =>
{
var consumable = o.LoadCollection <ActParticipation>("Participations").FirstOrDefault(x => x.ParticipationRoleKey == ActParticipationKey.Consumable)?.LoadProperty <ManufacturedMaterial>("PlayerEntity");
if (consumable == null)
{
var product = o.LoadCollection <ActParticipation>("Participations").FirstOrDefault(x => x.ParticipationRoleKey == ActParticipationKey.Product)?.LoadProperty <Material>("PlayerEntity");
return(new AdverseEventSuspectEntity()
{
Instance = DataTypeConverter.CreatePlainReference <Substance>(product, webOperationContext)
});
}
else
{
return new AdverseEventSuspectEntity()
{
Instance = DataTypeConverter.CreatePlainReference <Medication>(consumable, webOperationContext)
}
};
}).ToList();
}
return(retVal);
}
/// <summary>
/// Map a patient object to FHIR.
/// </summary>
/// <param name="model">The patient to map to FHIR</param>
/// <param name="restOperationContext">The current REST operation context</param>
/// <returns>Returns the mapped FHIR resource.</returns>
protected override Patient MapToFhir(Core.Model.Roles.Patient model, RestOperationContext restOperationContext)
{
var retVal = DataTypeConverter.CreateResource <Patient>(model);
retVal.Active = model.StatusConceptKey == StatusKeys.Active;
retVal.Address = model.LoadCollection <EntityAddress>("Addresses").Select(o => DataTypeConverter.ToFhirAddress(o)).ToList();
retVal.BirthDate = model.DateOfBirth;
retVal.Deceased = model.DeceasedDate == DateTime.MinValue ? (object)new FhirBoolean(true) : model.DeceasedDate != null ? new FhirDate(model.DeceasedDate.Value) : null;
retVal.Gender = DataTypeConverter.ToFhirCodeableConcept(model.LoadProperty <Concept>("GenderConcept"), "http://hl7.org/fhir/administrative-gender")?.GetPrimaryCode()?.Code;
retVal.Identifier = model.Identifiers?.Select(o => DataTypeConverter.ToFhirIdentifier(o)).ToList();
retVal.MultipleBirth = model.MultipleBirthOrder == 0 ? (FhirElement) new FhirBoolean(true) : model.MultipleBirthOrder.HasValue ? new FhirInt(model.MultipleBirthOrder.Value) : null;
retVal.Name = model.LoadCollection <EntityName>("Names").Select(o => DataTypeConverter.ToFhirHumanName(o)).ToList();
retVal.Timestamp = model.ModifiedOn.DateTime;
retVal.Telecom = model.LoadCollection <EntityTelecomAddress>("Telecoms").Select(o => DataTypeConverter.ToFhirTelecom(o)).ToList();
// TODO: Relationships
foreach (var rel in model.LoadCollection <EntityRelationship>("Relationships").Where(o => !o.InversionIndicator))
{
// Family member
if (rel.LoadProperty <Concept>(nameof(EntityRelationship.RelationshipType)).ConceptSetsXml.Contains(ConceptSetKeys.FamilyMember))
{
// Create the relative object
var relative = DataTypeConverter.CreateResource <RelatedPerson>(rel.LoadProperty <Person>(nameof(EntityRelationship.TargetEntity)));
relative.Relationship = DataTypeConverter.ToFhirCodeableConcept(rel.LoadProperty <Concept>(nameof(EntityRelationship.RelationshipType)));
relative.Address = DataTypeConverter.ToFhirAddress(rel.TargetEntity.Addresses.FirstOrDefault());
relative.Gender = DataTypeConverter.ToFhirCodeableConcept((rel.TargetEntity as Core.Model.Roles.Patient)?.LoadProperty <Concept>(nameof(Core.Model.Roles.Patient.GenderConcept)));
relative.Identifier = rel.TargetEntity.LoadCollection <EntityIdentifier>(nameof(Entity.Identifiers)).Select(o => DataTypeConverter.ToFhirIdentifier(o)).ToList();
relative.Name = DataTypeConverter.ToFhirHumanName(rel.TargetEntity.LoadCollection <EntityName>(nameof(Entity.Names)).FirstOrDefault());
if (rel.TargetEntity is Core.Model.Roles.Patient)
{
relative.Patient = DataTypeConverter.CreateReference <Patient>(rel.TargetEntity, restOperationContext);
}
relative.Telecom = rel.TargetEntity.LoadCollection <EntityTelecomAddress>(nameof(Entity.Telecoms)).Select(o => DataTypeConverter.ToFhirTelecom(o)).ToList();
retVal.Contained.Add(new ContainedResource()
{
Item = relative
});
}
else if (rel.RelationshipTypeKey == EntityRelationshipTypeKeys.HealthcareProvider)
{
retVal.Provider = DataTypeConverter.CreateReference <Practitioner>(rel.LoadProperty <Entity>(nameof(EntityRelationship.TargetEntity)), restOperationContext);
}
else if (rel.RelationshipTypeKey == EntityRelationshipTypeKeys.Replaces)
{
retVal.Link.Add(new PatientLink()
{
Type = PatientLinkType.Replace,
Other = Reference.CreateLocalResourceReference(rel.LoadProperty <Patient>(nameof(EntityRelationship.TargetEntity)))
});
}
else if (rel.RelationshipTypeKey == EntityRelationshipTypeKeys.Duplicate)
{
retVal.Link.Add(new PatientLink()
{
Type = PatientLinkType.SeeAlso,
Other = Reference.CreateLocalResourceReference(rel.LoadProperty <Patient>(nameof(EntityRelationship.TargetEntity)))
});
}
else if (rel.RelationshipTypeKey?.ToString() == "97730a52-7e30-4dcd-94cd-fd532d111578") // MDM Master Record
{
if (rel.SourceEntityKey != model.Key)
{
retVal.Link.Add(new PatientLink() // Is a master
{
Type = PatientLinkType.SeeAlso,
Other = Reference.CreateLocalResourceReference(rel.LoadProperty <Patient>(nameof(EntityRelationship.SourceEntity)))
});
}
else // Is a local
{
retVal.Link.Add(new PatientLink()
{
Type = PatientLinkType.Refer,
Other = Reference.CreateLocalResourceReference(rel.LoadProperty <Patient>(nameof(EntityRelationship.TargetEntity)))
});
}
}
}
var photo = model.LoadCollection <EntityExtension>("Extensions").FirstOrDefault(o => o.ExtensionTypeKey == ExtensionTypeKeys.JpegPhotoExtension);
if (photo != null)
{
retVal.Photo = new List <Attachment>()
{
new Attachment()
{
ContentType = "image/jpg",
Data = photo.ExtensionValueXml
}
}
}
;
// TODO: Links
return(retVal);
}
/// <summary>
/// Map the specified patient encounter to a FHIR based encounter
/// </summary>
protected override Encounter MapToFhir(PatientEncounter model, RestOperationContext restOperationContext)
{
var retVal = DataTypeConverter.CreateResource <Encounter>(model);
// Map the identifier
retVal.Identifier = model.LoadCollection <ActIdentifier>("Identifiers").Select(o => DataTypeConverter.ToFhirIdentifier <Act>(o)).ToList();
// Map status keys
switch (model.StatusConceptKey.ToString().ToUpper())
{
case StatusKeyStrings.Active:
retVal.Status = EncounterStatus.InProgress;
break;
case StatusKeyStrings.Cancelled:
case StatusKeyStrings.Nullified:
retVal.Status = EncounterStatus.Cancelled;
break;
case StatusKeyStrings.Completed:
retVal.Status = EncounterStatus.Finished;
break;
}
if (model.StartTime.HasValue || model.StopTime.HasValue)
{
retVal.Period = new FhirPeriod()
{
Start = model.StartTime?.DateTime,
Stop = model.StopTime?.DateTime
}
}
;
else
{
retVal.Period = new FhirPeriod()
{
Start = model.ActTime.DateTime,
Stop = model.ActTime.DateTime
}
};
retVal.Reason = DataTypeConverter.ToFhirCodeableConcept(model.LoadProperty <Concept>("ReasonConcept"));
retVal.Type = DataTypeConverter.ToFhirCodeableConcept(model.LoadProperty <Concept>("TypeConcept"));
// Map associated
var associated = model.LoadCollection <ActParticipation>("Participations");
// Subject of encounter
retVal.Subject = DataTypeConverter.CreateReference <SanteDB.Messaging.FHIR.Resources.Patient>(associated.FirstOrDefault(o => o.ParticipationRoleKey == ActParticipationKey.RecordTarget)?.LoadProperty <Entity>("PlayerEntity"), restOperationContext);
// Locations
retVal.Location = associated.Where(o => o.LoadProperty <Entity>("PlayerEntity") is Place).Select(o => new EncounterLocation()
{
Period = new FhirPeriod()
{
Start = model.CreationTime.DateTime
},
Location = DataTypeConverter.CreateReference <Location>(o.PlayerEntity, restOperationContext)
}).ToList();
// Service provider
var cst = associated.FirstOrDefault(o => o.LoadProperty <Entity>("PlayerEntity") is Core.Model.Entities.Organization && o.ParticipationRoleKey == ActParticipationKey.Custodian);
if (cst != null)
{
retVal.ServiceProvider = DataTypeConverter.CreateReference <SanteDB.Messaging.FHIR.Resources.Organization>(cst.PlayerEntity, restOperationContext);
}
// Participants
retVal.Participant = associated.Where(o => o.LoadProperty <Entity>("PlayerEntity") is Provider || o.LoadProperty <Entity>("PlayerEntity") is UserEntity).Select(o => new EncounterParticipant()
{
Period = new FhirPeriod()
{
Start = model.CreationTime.DateTime
},
Type = new List <FhirCodeableConcept>()
{
DataTypeConverter.ToFhirCodeableConcept(o.LoadProperty <Concept>("ParticipationRole"))
},
Individual = DataTypeConverter.CreateReference <Practitioner>(o.PlayerEntity, restOperationContext)
}).ToList();
return(retVal);
}
/// <summary>
/// Map to FHIR
/// </summary>
protected override Condition MapToFhir(CodedObservation model, WebOperationContext webOperationContext)
{
var retVal = DataTypeConverter.CreateResource <Condition>(model);
retVal.Identifier = model.LoadCollection <ActIdentifier>("Identifiers").Select(o => DataTypeConverter.ToFhirIdentifier <Act>(o)).ToList();
// Clinical status of the condition
if (model.StatusConceptKey == StatusKeys.Active)
{
retVal.ClinicalStatus = ConditionClinicalStatus.Active;
}
else if (model.StatusConceptKey == StatusKeys.Completed)
{
retVal.ClinicalStatus = ConditionClinicalStatus.Resolved;
}
else if (model.StatusConceptKey == StatusKeys.Nullified)
{
retVal.VerificationStatus = ConditionVerificationStatus.EnteredInError;
}
else if (model.StatusConceptKey == StatusKeys.Obsolete)
{
retVal.ClinicalStatus = ConditionClinicalStatus.Inactive;
}
// Category
retVal.Category.Add(new MARC.HI.EHRS.SVC.Messaging.FHIR.DataTypes.FhirCodeableConcept(new Uri("http://hl7.org/fhir/condition-category"), "encounter-diagnosis"));
// Severity?
var actRelationshipService = ApplicationContext.Current.GetService <IDataPersistenceService <ActRelationship> >();
var severity = actRelationshipService.Query(o => o.SourceEntityKey == model.Key && o.RelationshipTypeKey == ActRelationshipTypeKeys.HasComponent && o.TargetAct.TypeConceptKey == ObservationTypeKeys.Severity, AuthenticationContext.Current.Principal);
if (severity == null) // Perhaps we should get from neighbor if this is in an encounter
{
var contextAct = actRelationshipService.Query(o => o.TargetActKey == model.Key, AuthenticationContext.Current.Principal).FirstOrDefault();
if (contextAct != null)
{
severity = actRelationshipService.Query(o => o.SourceEntityKey == contextAct.SourceEntityKey && o.RelationshipTypeKey == ActRelationshipTypeKeys.HasComponent && o.TargetAct.TypeConceptKey == ObservationTypeKeys.Severity, AuthenticationContext.Current.Principal);
}
}
// Severity
if (severity != null)
{
retVal.Severity = DataTypeConverter.ToFhirCodeableConcept((severity as CodedObservation).LoadProperty <Concept>("Value"));
}
retVal.Code = DataTypeConverter.ToFhirCodeableConcept(model.LoadProperty <Concept>("Value"));
// body sites?
var sites = actRelationshipService.Query(o => o.SourceEntityKey == model.Key && o.RelationshipTypeKey == ActRelationshipTypeKeys.HasComponent && o.TargetAct.TypeConceptKey == ObservationTypeKeys.FindingSite, AuthenticationContext.Current.Principal);
retVal.BodySite = sites.Select(o => DataTypeConverter.ToFhirCodeableConcept(o.LoadProperty <CodedObservation>("TargetAct").LoadProperty <Concept>("Value"))).ToList();
// Subject
var recordTarget = model.LoadCollection <ActParticipation>("Participations").FirstOrDefault(o => o.ParticipationRoleKey == ActParticipationKey.RecordTarget);
if (recordTarget != null)
{
this.traceSource.TraceInformation("RCT: {0}", recordTarget.PlayerEntityKey);
retVal.Subject = DataTypeConverter.CreateReference <Patient>(recordTarget.LoadProperty <Entity>("PlayerEntity"), webOperationContext);
}
// Onset
if (model.StartTime.HasValue || model.StopTime.HasValue)
{
retVal.Onset = new FhirPeriod()
{
Start = model.StartTime?.DateTime,
Stop = model.StopTime?.DateTime
}
}
;
else
{
retVal.Onset = new FhirDateTime(model.ActTime.DateTime);
}
retVal.AssertionDate = model.CreationTime.LocalDateTime;
var author = model.LoadCollection <ActParticipation>("Participations").FirstOrDefault(o => o.ParticipationRoleKey == ActParticipationKey.Authororiginator);
if (author != null)
{
retVal.Asserter = DataTypeConverter.CreatePlainReference <Practitioner>(author.LoadProperty <Entity>("PlayerEntity"), webOperationContext);
}
return(retVal);
}
/// <summary>
/// Maps the substance administration to FHIR.
/// </summary>
/// <param name="model">The model.</param>
/// <returns>Returns the mapped FHIR resource.</returns>
protected override Immunization MapToFhir(SubstanceAdministration model, WebOperationContext webOperationContext)
{
var retVal = DataTypeConverter.CreateResource <Immunization>(model);
retVal.DoseQuantity = new FhirQuantity()
{
Units = DataTypeConverter.ToFhirCodeableConcept(model.LoadProperty <Concept>("DoseUnit"), "http://hl7.org/fhir/sid/ucum").GetPrimaryCode()?.Code?.Value,
Value = new FhirDecimal(model.DoseQuantity)
};
retVal.Date = (FhirDate)model.ActTime.DateTime;
retVal.Route = DataTypeConverter.ToFhirCodeableConcept(model.LoadProperty <Concept>(nameof(SubstanceAdministration.Route)));
retVal.Site = DataTypeConverter.ToFhirCodeableConcept(model.LoadProperty <Concept>(nameof(SubstanceAdministration.Site)));
retVal.Status = "completed";
//retVal.SelfReported = model.Tags.Any(o => o.TagKey == "selfReported" && Convert.ToBoolean(o.Value));
retVal.WasNotGiven = model.IsNegated;
// Material
var matPtcpt = model.Participations.FirstOrDefault(o => o.ParticipationRoleKey == ActParticipationKey.Consumable) ??
model.Participations.FirstOrDefault(o => o.ParticipationRoleKey == ActParticipationKey.Product);
if (matPtcpt != null)
{
var matl = matPtcpt.LoadProperty <Material>(nameof(ActParticipation.PlayerEntity));
retVal.VaccineCode = DataTypeConverter.ToFhirCodeableConcept(matl.LoadProperty <Concept>(nameof(Act.TypeConcept)));
retVal.ExpirationDate = matl.ExpiryDate.HasValue ? (FhirDate)matl.ExpiryDate : null;
retVal.LotNumber = (matl as ManufacturedMaterial)?.LotNumber;
}
else
{
retVal.ExpirationDate = null;
}
// RCT
var rct = model.Participations.FirstOrDefault(o => o.ParticipationRoleKey == ActParticipationKey.RecordTarget);
if (rct != null)
{
retVal.Patient = DataTypeConverter.CreateReference <Patient>(rct.LoadProperty <Entity>("PlayerEntity"), webOperationContext);
}
// Performer
var prf = model.Participations.FirstOrDefault(o => o.ParticipationRoleKey == ActParticipationKey.Performer);
if (prf != null)
{
retVal.Performer = DataTypeConverter.CreateReference <Practitioner>(rct.LoadProperty <Entity>("PlayerEntity"), webOperationContext);
}
// Protocol
foreach (var itm in model.Protocols)
{
ImmunizationProtocol protocol = new ImmunizationProtocol();
var dbProtocol = itm.LoadProperty <Protocol>(nameof(ActProtocol.Protocol));
protocol.DoseSequence = new FhirInt((int)model.SequenceId);
// Protocol lookup
protocol.Series = dbProtocol?.Name;
retVal.VaccinationProtocol.Add(protocol);
}
if (retVal.VaccinationProtocol.Count == 0)
{
retVal.VaccinationProtocol.Add(new ImmunizationProtocol()
{
DoseSequence = (int)model.SequenceId
});
}
var loc = model.Participations.FirstOrDefault(o => o.ParticipationRoleKey == ActParticipationKey.Location);
if (loc != null)
{
retVal.Extension.Add(new Extension()
{
Url = "http://openiz.org/extensions/act/fhir/location",
Value = new FhirString(loc.PlayerEntityKey.ToString())
});
}
return(retVal);
}
/// <summary>
/// Maps the object to model to fhir
/// </summary>
protected override MedicationAdministration MapToFhir(SubstanceAdministration model, WebOperationContext webOperationContext)
{
var retVal = DataTypeConverter.CreateResource <MedicationAdministration>(model);
retVal.Identifier = model.LoadCollection <ActIdentifier>("Identifiers").Select(o => DataTypeConverter.ToFhirIdentifier(o)).ToList();
if (model.StatusConceptKey == StatusKeys.Active)
{
retVal.Status = MedicationAdministrationStatus.InProgress;
}
else if (model.StatusConceptKey == StatusKeys.Completed)
{
retVal.Status = MedicationAdministrationStatus.Completed;
}
else if (model.StatusConceptKey == StatusKeys.Nullified)
{
retVal.Status = MedicationAdministrationStatus.EnteredInError;
}
else if (model.StatusConceptKey == StatusKeys.Cancelled)
{
retVal.Status = MedicationAdministrationStatus.Stopped;
}
retVal.Category = DataTypeConverter.ToFhirCodeableConcept(model.LoadProperty <Concept>("TypeConcept"), "http://hl7.org/fhir/medication-admin-category");
var consumableRelationship = model.LoadCollection <ActParticipation>("Participations").FirstOrDefault(o => o.ParticipationRoleKey == ActParticipationKey.Consumable);
var productRelationship = model.LoadCollection <ActParticipation>("Participations").FirstOrDefault(o => o.ParticipationRoleKey == ActParticipationKey.Product);
if (consumableRelationship != null)
{
retVal.Medication = DataTypeConverter.CreateReference <Medication>(consumableRelationship.LoadProperty <ManufacturedMaterial>("PlayerEntity"), webOperationContext);
}
else if (productRelationship != null)
{
retVal.Medication = DataTypeConverter.CreateReference <Substance>(productRelationship.LoadProperty <Material>("PlayerEntity"), webOperationContext);
//retVal.Medication = DataTypeConverter.ToFhirCodeableConcept(productRelationship.LoadProperty<Material>("PlayerEntity").LoadProperty<Concept>("TypeConcept"));
}
var rct = model.LoadCollection <ActParticipation>("Participations").FirstOrDefault(o => o.ParticipationRoleKey == ActParticipationKey.RecordTarget);
if (rct != null)
{
retVal.Subject = DataTypeConverter.CreateReference <Patient>(rct.LoadProperty <Entity>("PlayerEntity"), webOperationContext);
}
// Encounter
var erService = ApplicationContext.Current.GetService <IDataPersistenceService <EntityRelationship> >();
int tr = 0;
var enc = erService.Query(o => o.TargetEntityKey == model.Key && o.RelationshipTypeKey == ActRelationshipTypeKeys.HasComponent, 0, 1, AuthenticationContext.Current.Principal, out tr).FirstOrDefault();
if (enc != null)
{
// TODO: Encounter
}
// Effective time
retVal.EffectiveDate = model.ActTime.DateTime;
// performer
var performer = model.LoadCollection <ActParticipation>("Participations").FirstOrDefault(o => o.ParticipationRoleKey == ActParticipationKey.Performer) ??
model.LoadCollection <ActParticipation>("Participations").FirstOrDefault(o => o.ParticipationRoleKey == ActParticipationKey.Authororiginator);
if (performer != null)
{
retVal.Performer = new List <MARC.HI.EHRS.SVC.Messaging.FHIR.Backbone.MedicationPerformer>()
{
new MARC.HI.EHRS.SVC.Messaging.FHIR.Backbone.MedicationPerformer()
{
Actor = DataTypeConverter.CreateReference <Practitioner>(performer.LoadProperty <Entity>("PlayerEntity"), webOperationContext)
}
}
}
;
// Not given
retVal.NotGiven = model.IsNegated;
if (model.ReasonConceptKey.HasValue && model.IsNegated)
{
retVal.ReasonNotGiven = DataTypeConverter.ToFhirCodeableConcept(model.LoadProperty <Concept>("ReasonConcept"));
}
else if (model.ReasonConceptKey.HasValue)
{
retVal.ReasonCode = DataTypeConverter.ToFhirCodeableConcept(model.LoadProperty <Concept>("ReasonConcept"));
}
retVal.Dosage = new MARC.HI.EHRS.SVC.Messaging.FHIR.Backbone.MedicationDosage()
{
Site = DataTypeConverter.ToFhirCodeableConcept(model.LoadProperty <Concept>("Site")),
Route = DataTypeConverter.ToFhirCodeableConcept(model.LoadProperty <Concept>("Route")),
Dose = new MARC.HI.EHRS.SVC.Messaging.FHIR.DataTypes.FhirQuantity()
{
Value = model.DoseQuantity,
Units = DataTypeConverter.ToFhirCodeableConcept(model.LoadProperty <Concept>("DoseUnit"), "http://hl7.org/fhir/sid/ucum").GetPrimaryCode()?.Code?.Value
}
};
return(retVal);
}
/// <summary>
/// Map a patient object to FHIR.
/// </summary>
/// <param name="model">The model.</param>
/// <returns>Returns the mapped FHIR resource.</returns>
protected override Patient MapToFhir(Core.Model.Roles.Patient model, WebOperationContext webOperationContext)
{
var retVal = DataTypeConverter.CreateResource <Patient>(model);
retVal.Active = model.StatusConceptKey == StatusKeys.Active;
retVal.Address = model.Addresses.Select(o => DataTypeConverter.ToFhirAddress(o)).ToList();
retVal.BirthDate = model.DateOfBirth;
retVal.Deceased = model.DeceasedDate == DateTime.MinValue ? (object)new FhirBoolean(true) : model.DeceasedDate != null ? new FhirDate(model.DeceasedDate.Value) : null;
retVal.Gender = DataTypeConverter.ToFhirCodeableConcept(model.GenderConcept)?.GetPrimaryCode()?.Code;
retVal.Identifier = model.Identifiers?.Select(o => DataTypeConverter.ToFhirIdentifier(o)).ToList();
retVal.MultipleBirth = model.MultipleBirthOrder == 0 ? (FhirElement) new FhirBoolean(true) : model.MultipleBirthOrder.HasValue ? new FhirInt(model.MultipleBirthOrder.Value) : null;
retVal.Name = model.Names.Select(o => DataTypeConverter.ToFhirHumanName(o)).ToList();
retVal.Timestamp = model.ModifiedOn.DateTime;
retVal.Telecom = model.Telecoms.Select(o => DataTypeConverter.ToFhirTelecom(o)).ToList();
// TODO: Relationships
foreach (var rel in model.LoadCollection <EntityRelationship>("Relationships").Where(o => !o.InversionIndicator))
{
// Family member
if (rel.LoadProperty <Concept>(nameof(EntityRelationship.RelationshipType)).ConceptSetsXml.Contains(ConceptSetKeys.FamilyMember))
{
// Create the relative object
var relative = DataTypeConverter.CreateResource <RelatedPerson>(rel.LoadProperty <Person>(nameof(EntityRelationship.TargetEntity)));
relative.Relationship = DataTypeConverter.ToFhirCodeableConcept(rel.LoadProperty <Concept>(nameof(EntityRelationship.RelationshipType)));
relative.Address = DataTypeConverter.ToFhirAddress(rel.TargetEntity.Addresses.FirstOrDefault());
relative.Gender = DataTypeConverter.ToFhirCodeableConcept((rel.TargetEntity as Core.Model.Roles.Patient)?.LoadProperty <Concept>(nameof(Core.Model.Roles.Patient.GenderConcept)));
relative.Identifier = rel.TargetEntity.LoadCollection <EntityIdentifier>(nameof(Entity.Identifiers)).Select(o => DataTypeConverter.ToFhirIdentifier(o)).ToList();
relative.Name = DataTypeConverter.ToFhirHumanName(rel.TargetEntity.LoadCollection <EntityName>(nameof(Entity.Names)).FirstOrDefault());
if (rel.TargetEntity is Core.Model.Roles.Patient)
{
relative.Patient = DataTypeConverter.CreateReference <Patient>(rel.TargetEntity, webOperationContext);
}
relative.Telecom = rel.TargetEntity.LoadCollection <EntityTelecomAddress>(nameof(Entity.Telecoms)).Select(o => DataTypeConverter.ToFhirTelecom(o)).ToList();
retVal.Contained.Add(new ContainedResource()
{
Item = relative
});
}
else if (rel.RelationshipTypeKey == EntityRelationshipTypeKeys.HealthcareProvider)
{
retVal.Provider = DataTypeConverter.CreateReference <Practitioner>(rel.LoadProperty <Entity>(nameof(EntityRelationship.TargetEntity)), webOperationContext);
}
}
var photo = model.LoadCollection <EntityExtension>("Extensions").FirstOrDefault(o => o.ExtensionTypeKey == ExtensionTypeKeys.JpegPhotoExtension);
if (photo != null)
{
retVal.Photo = new List <Attachment>()
{
new Attachment()
{
ContentType = "image/jpg",
Data = photo.ExtensionValueXml
}
}
}
;
// TODO: Links
return(retVal);
}