private SourceInfo getSourceInfo(DirectoryInfo dirInfo)
{
string type = DataSourceUtil.GetSourceType(dirInfo);
SourceInfo sourceInfo = new SourceInfo(new MsDataFilePath(dirInfo.FullName))
{
type = type,
imageIndex = (DataSourceUtil.IsFolderType(type) ? ImageIndex.Folder : ImageIndex.MassSpecFile),
name = dirInfo.Name,
dateModified = GetSafeDateModified(dirInfo)
};
if (listView.View != View.Details ||
(sourceTypeComboBox.SelectedIndex > 0 &&
sourceTypeComboBox.SelectedItem.ToString() != sourceInfo.type))
{
return(sourceInfo);
}
if (sourceInfo.isFolder)
{
return(sourceInfo);
}
if (!sourceInfo.isUnknown)
{
sourceInfo.size = 0;
foreach (FileInfo fileInfo in dirInfo.GetFiles())
{
sourceInfo.size += (UInt64)fileInfo.Length;
}
return(sourceInfo);
}
return(null);
}
private SourceInfo getSourceInfo(FileInfo fileInfo)
{
string type = DataSourceUtil.GetSourceType(fileInfo);
SourceInfo sourceInfo = new SourceInfo(new MsDataFilePath(fileInfo.FullName))
{
type = type,
imageIndex = (DataSourceUtil.IsUnknownType(type) ? ImageIndex.UnknownFile : ImageIndex.MassSpecFile),
name = fileInfo.Name
};
if (!sourceInfo.isUnknown)
{
if (listView.View != View.Details ||
(sourceTypeComboBox.SelectedIndex > 0 &&
sourceTypeComboBox.SelectedItem.ToString() != sourceInfo.type))
{
return(sourceInfo);
}
sourceInfo.size = (UInt64)fileInfo.Length;
sourceInfo.dateModified = GetSafeDateModified(fileInfo);
return(sourceInfo);
}
return(null);
}
private IsolationRange[] ReadIsolationRanges(MsDataFileUri dataSource, IsolationRange[] isolationRanges)
{
var dictRangeCounts = isolationRanges.ToDictionary(r => r, r => 0);
var listRanges = new List <IsolationRange>(isolationRanges);
double minStart = double.MaxValue, maxStart = double.MinValue;
string path = dataSource.GetFilePath();
bool isPasef = Equals(DataSourceUtil.GetSourceType(new DirectoryInfo(path)), DataSourceUtil.TYPE_BRUKER);
using (var dataFile = new MsDataFileImpl(path, simAsSpectra: true))
{
int lookAheadCount = Math.Min(MAX_MULTI_CYCLE, dataFile.SpectrumCount);
for (int i = 0; i < lookAheadCount; i++)
{
if (dataFile.GetMsLevel(i) != 2)
{
continue;
}
var spectrum = dataFile.GetSpectrum(i);
isPasef = isPasef && spectrum.IonMobilities != null;
foreach (var precursor in spectrum.Precursors)
{
if (!precursor.IsolationWindowLower.HasValue || !precursor.IsolationWindowUpper.HasValue)
{
throw new IOException(string.Format(Resources.EditIsolationSchemeDlg_ReadIsolationRanges_Missing_isolation_range_for_the_isolation_target__0__m_z_in_the_file__1_, precursor.IsolationWindowTargetMz, dataSource));
}
double start = precursor.IsolationWindowTargetMz.Value - precursor.IsolationWindowLower.Value;
double end = precursor.IsolationWindowTargetMz.Value + precursor.IsolationWindowUpper.Value;
var range = new IsolationRange(start, end);
int count;
if (!dictRangeCounts.TryGetValue(range, out count))
{
count = 0;
dictRangeCounts.Add(range, count);
listRanges.Add(range);
}
if (count == 2)
{
// Repeating for the third time
i = lookAheadCount;
break;
}
dictRangeCounts[range] = count + 1;
minStart = Math.Min(minStart, range.Start);
maxStart = Math.Max(maxStart, range.Start);
}
}
}
if (dictRangeCounts.Values.Any(c => c == 1))
{
if (dictRangeCounts.Count > 2)
{
// Sometime demux of overlapping schemes leaves wings that repeat only every other cycle
RemoveRangeSingleton(minStart, dictRangeCounts, listRanges);
RemoveRangeSingleton(maxStart, dictRangeCounts, listRanges);
}
if (dictRangeCounts.Values.Any(c => c == 1))
{
throw new IOException(string.Format(Resources.EditIsolationSchemeDlg_ReadIsolationRanges_No_repeating_isolation_scheme_found_in__0_, dataSource));
}
}
// diaPASEF comes in out of order and will be misinterpreted unless ordered
// Multiplexing, however, requires that the acquired order by maintained
if (isPasef)
{
listRanges.Sort((r1, r2) => r1.Start.CompareTo(r2.Start));
}
return(listRanges.ToArray());
}
