public MSScanFromTextFileRun(string filePath)
{
DatasetFileOrDirectoryPath = Path.GetFullPath(filePath);
MSFileType = Globals.MSFileType.Ascii;
var baseFilename = Path.GetFileName(DatasetFileOrDirectoryPath);
DatasetName = baseFilename.Substring(0, baseFilename.LastIndexOf('.'));
DatasetDirectoryPath = Path.GetDirectoryName(DatasetFileOrDirectoryPath);
XYData = new XYData();
CurrentScanSet = new Core.ScanSet(0); //
}
public override XYData GetMassSpectrum(Core.ScanSet scanSet, double minMZ, double maxMZ)
{
XYData xyData;
try
{
xyData = loadDataFromFile(DatasetFileOrDirectoryPath);
}
catch (Exception ex)
{
throw new IOException("There was an error reading file " + Utilities.DiagnosticUtilities.GetFullPathSafe(DatasetFileOrDirectoryPath) + "\n\n" + ex.Message);
}
xyData = xyData.TrimData(minMZ, maxMZ);
return(xyData);
}
public override XYData GetMassSpectrum(Core.ScanSet scanset)
{
return(XYData);
}
