public void test_L3_Compartment_createWithNS() { XMLNamespaces xmlns = new XMLNamespaces(); xmlns.add("http://www.sbml.org", "testsbml"); SBMLNamespaces sbmlns = new SBMLNamespaces(3, 1); sbmlns.addNamespaces(xmlns); Compartment c = new Compartment(sbmlns); assertTrue(c.getTypeCode() == libsbml.SBML_COMPARTMENT); assertTrue(c.getMetaId() == ""); assertTrue(c.getNotes() == null); assertTrue(c.getAnnotation() == null); assertTrue(c.getLevel() == 3); assertTrue(c.getVersion() == 1); assertTrue(c.getNamespaces() != null); assertTrue(c.getNamespaces().getLength() == 2); assertTrue(c.getId() == ""); assertTrue(c.getName() == ""); assertTrue(c.getUnits() == ""); assertTrue(c.getOutside() == ""); assertEquals(true, isnan(c.getSpatialDimensionsAsDouble())); assertEquals(true, isnan(c.getVolume())); assertTrue(c.getConstant() == true); assertEquals(false, c.isSetId()); assertEquals(false, c.isSetSpatialDimensions()); assertEquals(false, c.isSetName()); assertEquals(false, c.isSetSize()); assertEquals(false, c.isSetVolume()); assertEquals(false, c.isSetUnits()); assertEquals(false, c.isSetOutside()); assertEquals(false, c.isSetConstant()); c = null; }
public void test_RDFAnnotation_deleteWithOutOther() { Compartment c = m.getCompartment(2); XMLNode node = c.getAnnotation(); string expected = "<annotation>\n" + " <jd2:JDesignerLayout version=\"2.0\" MajorVersion=\"2\" MinorVersion=\"0\" BuildVersion=\"41\">\n" + " <jd2:header>\n" + " <jd2:VersionHeader JDesignerVersion=\"2.0\"/>\n" + " <jd2:ModelHeader Author=\"Mr Untitled\" ModelVersion=\"0.0\" ModelTitle=\"untitled\"/>\n" + " <jd2:TimeCourseDetails timeStart=\"0\" timeEnd=\"10\" numberOfPoints=\"1000\"/>\n" + " </jd2:header>\n" + " </jd2:JDesignerLayout>\n" + "</annotation>"; assertEquals( true, equals(expected,node.toXMLString()) ); }
public void test_Compartment_createWith() { Compartment c = new Compartment(2, 4); c.setId("A"); assertTrue(c.getTypeCode() == libsbml.SBML_COMPARTMENT); assertTrue(c.getMetaId() == ""); assertTrue(c.getNotes() == null); assertTrue(c.getAnnotation() == null); assertTrue(c.getName() == ""); assertTrue(c.getSpatialDimensions() == 3); assertTrue(("A" == c.getId())); assertTrue(c.getConstant() == true); assertEquals(true, c.isSetId()); assertEquals(false, c.isSetName()); c = null; }
public void test_RDFAnnotation_deleteWithOtherRDF() { Compartment c = m.getCompartment(5); XMLNode node = c.getAnnotation(); string expected = "<annotation>\n" + " <jd2:JDesignerLayout version=\"2.0\" MajorVersion=\"2\" MinorVersion=\"0\" BuildVersion=\"41\">\n" + " <jd2:header>\n" + " <jd2:VersionHeader JDesignerVersion=\"2.0\"/>\n" + " <jd2:ModelHeader Author=\"Mr Untitled\" ModelVersion=\"0.0\" ModelTitle=\"untitled\"/>\n" + " <jd2:TimeCourseDetails timeStart=\"0\" timeEnd=\"10\" numberOfPoints=\"1000\"/>\n" + " </jd2:header>\n" + " </jd2:JDesignerLayout>\n" + " <rdf:RDF xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\" xmlns:dc=\"http://purl.org/dc/elements/1.1/\" xmlns:dcterms=\"http://purl.org/dc/terms/\" xmlns:vCard=\"http://www.w3.org/2001/vcard-rdf/3.0#\" xmlns:bqbiol=\"http://biomodels.net/biology-qualifiers/\" xmlns:bqmodel=\"http://biomodels.net/model-qualifiers/\">\n" + " <rdf:Description>\n" + " <rdf:other/>\n" + " </rdf:Description>\n" + " </rdf:RDF>\n" + "</annotation>"; assertEquals( true, equals(expected,node.toXMLString()) ); }
public void test_Compartment_create() { assertTrue(C.getTypeCode() == libsbml.SBML_COMPARTMENT); assertTrue(C.getMetaId() == ""); assertTrue(C.getNotes() == null); assertTrue(C.getAnnotation() == null); assertTrue(C.getId() == ""); assertTrue(C.getName() == ""); assertTrue(C.getUnits() == ""); assertTrue(C.getOutside() == ""); assertTrue(C.getSpatialDimensions() == 3); assertTrue(C.getVolume() == 1.0); assertTrue(C.getConstant() == true); assertEquals(false, C.isSetId()); assertEquals(false, C.isSetName()); assertEquals(false, C.isSetSize()); assertEquals(false, C.isSetVolume()); assertEquals(false, C.isSetUnits()); assertEquals(false, C.isSetOutside()); }
public void test_Compartment_createWithNS() { XMLNamespaces xmlns = new XMLNamespaces(); xmlns.add("http://www.sbml.org", "testsbml"); SBMLNamespaces sbmlns = new SBMLNamespaces(2, 1); sbmlns.addNamespaces(xmlns); Compartment c = new Compartment(sbmlns); assertTrue(c.getTypeCode() == libsbml.SBML_COMPARTMENT); assertTrue(c.getMetaId() == ""); assertTrue(c.getNotes() == null); assertTrue(c.getAnnotation() == null); assertTrue(c.getLevel() == 2); assertTrue(c.getVersion() == 1); assertTrue(c.getNamespaces() != null); assertTrue(c.getNamespaces().getLength() == 2); assertTrue(c.getName() == ""); assertTrue(c.getSpatialDimensions() == 3); assertTrue(c.getConstant() == true); c = null; }