internal static ValueSet.ContainsComponent ToContainsComponent(this CodeSystem.ConceptDefinitionComponent source, CodeSystem system)
{
var newContains = new ValueSet.ContainsComponent();
newContains.System = system.Url;
newContains.Version = system.Version;
newContains.Code = source.Code;
newContains.Display = source.Display;
var abstractProperty = source.ListConceptProperties(system, CodeSystem.CONCEPTPROPERTY_NOT_SELECTABLE).SingleOrDefault();
var isAbstract = (FhirBoolean)abstractProperty?.Value;
if (isAbstract?.Value != null)
{
newContains.Abstract = isAbstract.Value;
}
var inactiveProperty = source.ListConceptProperties(system, CodeSystem.CONCEPTPROPERTY_STATUS).SingleOrDefault();
var isInactive = (FhirBoolean)inactiveProperty?.Value;
if (isInactive?.Value != null)
{
newContains.Inactive = isInactive.Value;
}
if (source.Concept.Any())
{
newContains.Contains.AddRange(
source.Concept.Select(c => c.ToContainsComponent(system)));
}
return(newContains);
}
/// <summary>
/// Create local code systems for those that are not defined in this project.
/// Add all value set codes taht reference this code system into it.
/// </summary>
/// <param name="vi"></param>
void BuildLocalCodeSystem(VSInfo vi)
{
foreach (ValueSet.ConceptSetComponent component in vi.ValueSet.Compose.Include)
{
foreach (ValueSet.ConceptReferenceComponent concept in component.Concept)
{
// if code system not found
if (this.CodeSystems.TryGetValue(component.System, out CSInfo ci) == false)
{
if (this.LocalCodeSystems.TryGetValue(component.System, out ci) == false)
{
ci = new CSInfo(new CodeSystem
{
Name = component.System.LastUriPart(),
Url = component.System
});
this.LocalCodeSystems.Add(component.System, ci);
}
CodeSystem.ConceptDefinitionComponent c = new CodeSystem.ConceptDefinitionComponent
{
Code = concept.Code,
Display = concept.Display
};
ci.CodeSystem.Concept.Add(c);
}
}
}
}
void Process(String codeSystemName,
CodeSystem.ConceptDefinitionComponent concept,
FSHFile f)
{
if (String.IsNullOrEmpty(concept.Definition) == true)
{
return;
}
String code = concept.Code;
switch (code)
{
case "mgBreastDensityObservation":
break;
case "mgFindingObservationObservation":
code = "mgFindingObservation";
break;
case "mgDensity":
code = "mgBreastDensity";
break;
case "EqualDensity":
code = "HeterogeneouslyDense";
break;
case "FatContaining":
code = "AlmostEntirelyFat";
break;
case "HighDensity":
code = "ExtremelyDense";
break;
case "LowDensity":
code = "ScatteredAreasOfFibroglandularDensity";
break;
case "mgCalcificationDistribution":
case "CentralLucent":
return;
default:
code = code.Replace("Quadrent", "Quadrant");
if (code.StartsWith("sectionCode"))
{
code = code.Substring(11);
}
if (code.StartsWith("section"))
{
code = code.Substring(7);
}
if (code.StartsWith("mg"))
{
code = code.Substring(2);
}
break;
}
Int32 i = f.FindConcept(codeSystemName, code);
if (i < 0)
{
Console.WriteLine($"Error finding concept '{codeSystemName}#{code}' in FSH file {Path.GetFileName(f.Path)}");
return;
}
void InsertLine(String s)
{
i += 1;
f.Lines.Insert(i, s);
}
void RemoveBlanks()
{
Int32 j = i + 1;
while (j < f.Lines.Count)
{
if (String.IsNullOrEmpty(f.Lines[j].Trim()) == false)
{
return;
}
f.Lines.RemoveAt(j);
}
}
bool HasMLComment()
{
if (i >= f.Lines.Count)
{
return(false);
}
return(f.Lines[i + 1].Trim().StartsWith("\"\"\""));
}
if (HasMLComment())
{
return;
}
InsertLine(" \"\"\"");
bool blankLineFlag = false;
foreach (String s in concept.Definition.Split('\n'))
{
String line = s.Trim()
.Replace("\r", "")
.Replace("\"", "'")
;
bool thisBlanksLine = String.IsNullOrEmpty(line);
if ((blankLineFlag == false) || (thisBlanksLine == false))
{
InsertLine($" {line}");
}
blankLineFlag = thisBlanksLine;
}
InsertLine(" \"\"\"");
InsertLine("");
RemoveBlanks();
}
