public List <Tuple <string, string> > GetUcscKaryotypeOrder(string dirPath)
{
var vepDirectories = Directory.GetDirectories(dirPath);
var referenceDict = new SortedDictionary <ushort, Tuple <string, string> >();
foreach (var dir in vepDirectories)
{
string referenceName = Path.GetFileName(dir);
if (!_renamer.InReferenceAndVep(referenceName))
{
continue;
}
string ucscReferenceName = _renamer.GetUcscReferenceName(referenceName, false);
var refIndex = GetIndex(ucscReferenceName);
referenceDict[refIndex] = new Tuple <string, string>(ucscReferenceName, dir);
}
return(referenceDict.Values.ToList());
}
public void InReferenceAndVep(string referenceName, bool expectedResult)
{
var observedResult = _renamer.InReferenceAndVep(referenceName);
Assert.Equal(expectedResult, observedResult);
}
