public IEnumerable <ChromatogramRequestDocumentChromatogramGroup> ToChromatogramRequestDocumentChromatogramGroups()
{
// TODO(bspratt) how to communicate scan polarity to Chorus?
if (null != Ms1ProductFilters)
{
var chromatograms = new List <ChromatogramRequestDocumentChromatogramGroupChromatogram>();
foreach (var spectrumProductFilter in Ms1ProductFilters)
{
var product = new ChromatogramRequestDocumentChromatogramGroupChromatogram
{
ProductMz = spectrumProductFilter.TargetMz.RawValue, // Negative ion mode values serialize as negative numbers
MzWindow = spectrumProductFilter.FilterWidth,
};
chromatograms.Add(product);
}
if (chromatograms.Count > 0)
{
yield return(MakeChromatogramRequestDocumentChromatogramGroup(ChromSource.ms1, HighAccQ1 && 0 != Q1, chromatograms));
}
}
if (null != Ms2ProductFilters)
{
var chromatograms = new List <ChromatogramRequestDocumentChromatogramGroupChromatogram>();
foreach (var spectrumProductFilter in Ms2ProductFilters)
{
var product = new ChromatogramRequestDocumentChromatogramGroupChromatogram
{
ProductMz = spectrumProductFilter.TargetMz.RawValue, // Negative ion mode values serialize as negative numbers
MzWindow = spectrumProductFilter.FilterWidth,
};
chromatograms.Add(product);
}
if (chromatograms.Count > 0)
{
yield return
(MakeChromatogramRequestDocumentChromatogramGroup(ChromSource.fragment, HighAccQ3, chromatograms));
}
}
}
public IEnumerable <ChromatogramRequestDocumentChromatogramGroup> ToChromatogramRequestDocumentChromatogramGroups()
{
if (null != Ms1ProductFilters)
{
var chromatograms = new List <ChromatogramRequestDocumentChromatogramGroupChromatogram>();
foreach (var spectrumProductFilter in Ms1ProductFilters)
{
var product = new ChromatogramRequestDocumentChromatogramGroupChromatogram
{
ProductMz = spectrumProductFilter.TargetMz,
MzWindow = spectrumProductFilter.FilterWidth,
};
chromatograms.Add(product);
}
if (chromatograms.Count > 0)
{
yield return(MakeChromatogramRequestDocumentChromatogramGroup(ChromSource.ms1, HighAccQ1 && 0 != Q1, chromatograms));
}
}
if (null != Ms2ProductFilters)
{
var chromatograms = new List <ChromatogramRequestDocumentChromatogramGroupChromatogram>();
foreach (var spectrumProductFilter in Ms2ProductFilters)
{
var product = new ChromatogramRequestDocumentChromatogramGroupChromatogram
{
ProductMz = spectrumProductFilter.TargetMz,
MzWindow = spectrumProductFilter.FilterWidth,
};
chromatograms.Add(product);
}
if (chromatograms.Count > 0)
{
yield return
(MakeChromatogramRequestDocumentChromatogramGroup(ChromSource.fragment, HighAccQ3, chromatograms));
}
}
}
