public void CreateAndAdd()
{
var candidates = new List <CandidateAllele>()
{
new CandidateAllele("chr1", 100, "A", "AT", AlleleCategory.Insertion),
new CandidateAllele("chr1", 100, "A", "A", AlleleCategory.Reference),
new CandidateAllele("chr1", 100, "A", "T", AlleleCategory.Snv),
new CandidateAllele("chr1", 200, "A", "T", AlleleCategory.Mnv)
};
var batch = new CandidateBatch(candidates);
var batchCandidates = batch.GetCandidates();
Assert.Equal(4, batchCandidates.Count);
foreach (var candidate in candidates)
{
Assert.True(batchCandidates.Contains(candidate));
}
// add new candidate
var newCandidate = new CandidateAllele("chr1", 200, "AT", "A", AlleleCategory.Deletion);
batch.Add(new List <CandidateAllele>()
{
newCandidate
});
Assert.Equal(5, batchCandidates.Count);
Assert.True(batchCandidates.Contains(newCandidate));
}
private void ExecuteTest(RegionPadder mapper, CandidateBatch batch,
List <CandidateAllele> expectedAlleles, bool mapAll = false)
{
mapper.Pad(batch, mapAll);
var candidates = batch.GetCandidates();
Assert.Equal(expectedAlleles.Count, candidates.Count());
foreach (var candidate in candidates)
{
Assert.True(expectedAlleles.Contains(candidate));
}
}
