protected double getPrecursorIsolationWindowParams(Spectrum spectrum, CVID cvid)
{
double result = -1;
var retryTimes = 3;
while (result < 0 && retryTimes > 0)
{
try
{
Precursor precursor = spectrum.precursors[0];
result = Double.Parse(precursor.isolationWindow.cvParamChild(cvid).value.ToString());
}
catch (FormatException e)
{
jobInfo.log(cvid + "-重试次数-" + retryTimes + "-Result:" + result);
jobInfo.log(e.StackTrace);
}
retryTimes--;
}
if (result < 0)
{
throw new Exception("Parse Double Error:" + result);
}
return(result);
}
/// <summary>
/// Constructor
/// </summary>
/// <param name="pCVID">Term enum identifier</param>
/// <param name="pCVRef">term parent CV</param>
/// <param name="pId">term identifier</param>
/// <param name="pName">term name</param>
/// <param name="pDef">term definition</param>
/// <param name="pIsObs">if the term is marked obsolete</param>
public TermInfo(CVID pCVID, string pCVRef, string pId, string pName, string pDef, bool pIsObs)
{
Cvid = pCVID;
CVRef = pCVRef;
Id = pId;
Name = pName;
Definition = pDef;
IsObsolete = pIsObs;
}
public async Task <IActionResult> setMainCV([FromBody] CVID cvID)
{
var ID = Guid.Parse(cvID.CvID);
int rs = await _cvService.setMainCV(ID);
if (rs == 1)
{
return(Ok(new BaseResponse(200, "Đặt CV chính thành công")));
}
else
{
return(Ok(new BaseResponse(200, "CV đang được chọn là CV chính")));
}
}
private void initializeGridView(CVID nativeIdFormat)
{
// force handle creation
IntPtr dummy = gridView.Handle;
spectrumList = new Dictionary <int, MassSpectrum>();
this.nativeIdFormat = nativeIdFormat;
if ((nativeIdFormat != CVID.CVID_Unknown) && (nativeIdFormat != CVID.MS_no_nativeID_format))
{
string nativeIdDefinition = new CVTermInfo(nativeIdFormat).def.Replace("Native format defined by ", "");
string[] nameValuePairs = nativeIdDefinition.Split(" ".ToCharArray());
for (int i = 0; i < nameValuePairs.Length; ++i)
{
string[] nameValuePair = nameValuePairs[i].Split("=".ToCharArray());
DataGridViewColumn nameColumn = new DataGridViewAutoFilter.DataGridViewAutoFilterTextBoxColumn();
nameColumn.Name = nameValuePair[0] + "NativeIdColumn";
nameColumn.HeaderText = System.Globalization.CultureInfo.CurrentCulture.TextInfo.ToTitleCase(nameValuePair[0]);
nameColumn.DataPropertyName = nameValuePair[0];
gridView.Columns.Insert(1 + i, nameColumn);
string type = null;
if (nameValuePair[0] == "file" || nameValuePair[1] == "xsd:string")
{
type = "System.String";
}
else
{
type = "System.Int32";
}
spectrumDataSet.SpectrumTable.Columns.Add(nameValuePair[0], Type.GetType(type));
}
}
gridView.Columns["SpectrumType"].ToolTipText = new CVTermInfo(CVID.MS_spectrum_type).def;
gridView.Columns["MsLevel"].ToolTipText = new CVTermInfo(CVID.MS_ms_level).def;
gridView.Columns["ScanTime"].ToolTipText = new CVTermInfo(CVID.MS_scan_start_time).def;
gridView.Columns["BasePeakMz"].ToolTipText = new CVTermInfo(CVID.MS_base_peak_m_z).def;
gridView.Columns["BasePeakIntensity"].ToolTipText = new CVTermInfo(CVID.MS_base_peak_intensity).def;
gridView.Columns["TotalIonCurrent"].ToolTipText = new CVTermInfo(CVID.MS_total_ion_current).def;
gridView.Columns["ScanTime"].HeaderText += Properties.Settings.Default.TimeInMinutes ? " (min)" : " (sec)";
gridView.DataBindingComplete += new DataGridViewBindingCompleteEventHandler(gridView_DataBindingComplete);
}
/// <summary>
/// Returns true if child has an IsA relationship with parent
/// </summary>
/// <param name="child"></param>
/// <param name="parent"></param>
/// <returns></returns>
public static bool CvidIsA(CVID child, CVID parent)
{
if (!RelationsIsA.ContainsKey(child))
{
return(false);
}
var relList = RelationsIsA[child];
if (relList.Contains(parent))
{
return(true);
}
// Dig deeper - check grandparents, etc.
foreach (var ancestor in RelationsIsA[child])
{
if (CvidIsA(ancestor, parent))
{
return(true);
}
}
return(false);
}
private void initializeGridView( CVID nativeIdFormat )
{
// force handle creation
IntPtr dummy = gridView.Handle;
spectrumList = new Dictionary<int, MassSpectrum>();
this.nativeIdFormat = nativeIdFormat;
if ((nativeIdFormat != CVID.CVID_Unknown) && (nativeIdFormat != CVID.MS_no_nativeID_format))
{
string nativeIdDefinition = new CVTermInfo( nativeIdFormat ).def.Replace("Native format defined by ", "");
string[] nameValuePairs = nativeIdDefinition.Split( " ".ToCharArray() );
for( int i = 0; i < nameValuePairs.Length; ++i )
{
string[] nameValuePair = nameValuePairs[i].Split( "=".ToCharArray() );
DataGridViewColumn nameColumn = new DataGridViewAutoFilter.DataGridViewAutoFilterTextBoxColumn();
nameColumn.Name = nameValuePair[0];
nameColumn.HeaderText = System.Globalization.CultureInfo.CurrentCulture.TextInfo.ToTitleCase( nameValuePair[0] );
nameColumn.DataPropertyName = nameValuePair[0];
gridView.Columns.Insert( 1 + i, nameColumn );
string type = null;
if( nameValuePair[0] == "file" )
type = "System.String";
else
type = "System.Int32";
spectrumDataSet.SpectrumTable.Columns.Add( nameValuePair[0], Type.GetType( type ) );
}
}
gridView.Columns["SpectrumType"].ToolTipText = new CVTermInfo(CVID.MS_spectrum_type).def;
gridView.Columns["MsLevel"].ToolTipText = new CVTermInfo( CVID.MS_ms_level ).def;
gridView.Columns["ScanTime"].ToolTipText = new CVTermInfo( CVID.MS_scan_start_time ).def;
gridView.Columns["BasePeakMz"].ToolTipText = new CVTermInfo( CVID.MS_base_peak_m_z ).def;
gridView.Columns["BasePeakIntensity"].ToolTipText = new CVTermInfo( CVID.MS_base_peak_intensity ).def;
gridView.Columns["TotalIonCurrent"].ToolTipText = new CVTermInfo( CVID.MS_total_ion_current ).def;
gridView.DataBindingComplete += new DataGridViewBindingCompleteEventHandler( gridView_DataBindingComplete );
}
public SpectrumListForm(CVID nativeIdFormat)
{
InitializeComponent();
initializeGridView(nativeIdFormat);
}
public SpectrumListForm( CVID nativeIdFormat )
{
InitializeComponent();
initializeGridView( nativeIdFormat );
}
private static double? GetIsolationWindowValue(Precursor precursor, CVID cvid)
{
var term = precursor.isolationWindow.cvParam(cvid);
if (!term.empty())
return term.value;
return null;
}
/// <summary>
/// Returns true if this term has an IsA relationship with parent
/// </summary>
/// <param name="parent"></param>
public bool IsA(CVID parent)
{
return(CvidIsA(Cvid, parent));
}
