private void btnDigest_Click(object sender, EventArgs e)
{
string Seq = "AYDTEVHNVWATHACVPTDPNPQEVELKNVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNATNGNDTNTTSSSRGMVGGGEMKNCSFNITTNIRGKVQKEYALFYELDIVPIDNKIDRYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGKGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFADNAKVIIVQLNESVEINCTRPNNNTRKSINIGPGRALYTTGEIIGDIRQAHCNLSRAKWNDTLNKIVIKLREQFGNKTIVFKHSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWNVTEESNNTVENNTITLPCRIKQIINMWQEVGRAMYAPPIRGQIRCSSNITGLLLTRDGGPEDNKTEVFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREK";
COL.ProtLib.ProteinInfo PInfo = new COL.ProtLib.ProteinInfo("BL", Seq);
List <string> Peps = PInfo.CreateCleavage(1, new List <COL.ProtLib.Protease.Type>()
{
COL.ProtLib.Protease.Type.GlucE, COL.ProtLib.Protease.Type.Trypsin
});
List <COL.ProtLib.ProteinInfo> FastaProts = COL.ProtLib.FastaReader.ReadFasta(@"E:\Dropbox\gp120\GP120-5_TrypsinGluC_HILIC_120413_01.fasta");
foreach (COL.ProtLib.ProteinInfo pIn in FastaProts)
{
bool found = false;
foreach (string pep in Peps)
{
if (pIn.Sequence == pep)
{
found = true;
break;
}
}
if (found == false)
{
}
}
}
private void btnDigest_Click(object sender, EventArgs e)
{
string Seq ="AYDTEVHNVWATHACVPTDPNPQEVELKNVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNATNGNDTNTTSSSRGMVGGGEMKNCSFNITTNIRGKVQKEYALFYELDIVPIDNKIDRYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGKGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFADNAKVIIVQLNESVEINCTRPNNNTRKSINIGPGRALYTTGEIIGDIRQAHCNLSRAKWNDTLNKIVIKLREQFGNKTIVFKHSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWNVTEESNNTVENNTITLPCRIKQIINMWQEVGRAMYAPPIRGQIRCSSNITGLLLTRDGGPEDNKTEVFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREK";
COL.ProtLib.ProteinInfo PInfo = new COL.ProtLib.ProteinInfo("BL", Seq);
List<string> Peps = PInfo.CreateCleavage(1, new List<COL.ProtLib.Protease.Type>() { COL.ProtLib.Protease.Type.GlucE, COL.ProtLib.Protease.Type.Trypsin });
List<COL.ProtLib.ProteinInfo> FastaProts = COL.ProtLib.FastaReader.ReadFasta(@"E:\Dropbox\gp120\GP120-5_TrypsinGluC_HILIC_120413_01.fasta");
foreach (COL.ProtLib.ProteinInfo pIn in FastaProts)
{
bool found = false;
foreach (string pep in Peps)
{
if (pIn.Sequence == pep)
{
found = true;
break;
}
}
if (found == false)
{
}
}
}
