public void NewData(BondData data)
{
if (dataHandler != null)
dataHandler(data);
else if (queue != null)
queue.Add(data);
}
public BondData[] getRGroupBonds(string aminoAcidCode)
{
BondData[] bonds;
if (RGroupBonds.TryGetValue(aminoAcidCode, out bonds))
{
return(bonds);
}
bonds = new BondData[0];
return(bonds);
}
public void NewData(BondData data)
{
if (dataHandler != null)
{
dataHandler(data);
}
else if (queue != null)
{
queue.Add(data);
}
}
private void Process(BondData data)
{
Console.WriteLine("NewData({0}, {1}, {2})", data.Name, data.Price.ToString("000.00"), data.Timestamp.ToString("HH:mm:ss.FFF"));
}
private void initalize()
{
//Creates R group bond dictionary
BondData[] gly, ala, ile, leu, met, val, phe, trp, tyr, asn, cys,
gln, ser, thr, asp, glu, arg, his, lys, pro;
RGroupBonds = new Dictionary <string, BondData[]>();
gly = new BondData[0];
RGroupBonds.Add("GLY", gly);
ala = new BondData[1];
ala[0] = new BondData(1, 4);
RGroupBonds.Add("ALA", ala);
ser = new BondData[2];
ser[0] = new BondData(1, 4);
ser[1] = new BondData(4, 5);
RGroupBonds.Add("SER", ser);
leu = new BondData[4];
leu[0] = new BondData(1, 4);
leu[1] = new BondData(4, 5);
leu[2] = new BondData(5, 6);
leu[3] = new BondData(5, 7);
RGroupBonds.Add("LEU", leu);
lys = new BondData[5];
lys[0] = new BondData(1, 4);
lys[1] = new BondData(4, 5);
lys[2] = new BondData(5, 6);
lys[3] = new BondData(6, 7);
lys[4] = new BondData(7, 8);
RGroupBonds.Add("LYS", lys);
val = new BondData[3];
val[0] = new BondData(1, 4);
val[1] = new BondData(4, 5);
val[2] = new BondData(4, 6);
RGroupBonds.Add("VAL", val);
gln = new BondData[5];
gln[0] = new BondData(1, 4);
gln[1] = new BondData(4, 5);
gln[2] = new BondData(5, 6);
gln[3] = new BondData(6, 7);
gln[3].makeDoubleBond();
gln[4] = new BondData(6, 8);
RGroupBonds.Add("GLN", gln);
asp = new BondData[4];
asp[0] = new BondData(1, 4);
asp[1] = new BondData(4, 5);
asp[2] = new BondData(5, 6);
asp[2].makeDoubleBond();
asp[3] = new BondData(5, 7);
RGroupBonds.Add("ASP", asp);
arg = new BondData[7];
arg[0] = new BondData(1, 4);
arg[1] = new BondData(4, 5);
arg[2] = new BondData(5, 6);
arg[3] = new BondData(6, 7);
arg[4] = new BondData(7, 8);
arg[5] = new BondData(8, 9);
arg[6] = new BondData(8, 10);
arg[6].makeDoubleBond();
RGroupBonds.Add("ARG", arg);
phe = new BondData[8];
phe[0] = new BondData(1, 4);
phe[1] = new BondData(4, 5);
phe[2] = new BondData(5, 6);
phe[3] = new BondData(5, 7);
phe[3].makeDoubleBond();
phe[4] = new BondData(7, 9);
phe[5] = new BondData(6, 8);
phe[5].makeDoubleBond();
phe[6] = new BondData(8, 10);
phe[7] = new BondData(9, 10);
phe[7].makeDoubleBond();
RGroupBonds.Add("PHE", phe);
ile = new BondData[4];
ile[0] = new BondData(1, 4);
ile[1] = new BondData(4, 5);
ile[2] = new BondData(4, 6);
ile[3] = new BondData(6, 7);
RGroupBonds.Add("ILE", ile);
pro = new BondData[4];
pro[0] = new BondData(1, 4);
pro[1] = new BondData(4, 5);
pro[2] = new BondData(5, 6);
pro[3] = new BondData(6, 0);
RGroupBonds.Add("PRO", pro);
thr = new BondData[3];
thr[0] = new BondData(1, 4);
thr[1] = new BondData(4, 5);
thr[2] = new BondData(4, 6);
RGroupBonds.Add("THR", thr);
tyr = new BondData[9];
tyr[0] = new BondData(1, 4);
tyr[1] = new BondData(4, 5);
tyr[2] = new BondData(5, 6);
tyr[3] = new BondData(5, 7);
tyr[3].makeDoubleBond();
tyr[4] = new BondData(7, 9);
tyr[5] = new BondData(6, 8);
tyr[5].makeDoubleBond();
tyr[6] = new BondData(8, 10);
tyr[7] = new BondData(9, 10);
tyr[7].makeDoubleBond();
tyr[8] = new BondData(10, 11);
RGroupBonds.Add("TYR", tyr);
glu = new BondData[5];
glu[0] = new BondData(1, 4);
glu[1] = new BondData(4, 5);
glu[2] = new BondData(5, 6);
glu[3] = new BondData(6, 7);
glu[3].makeDoubleBond();
glu[4] = new BondData(6, 8);
RGroupBonds.Add("GLU", glu);
his = new BondData[7];
his[0] = new BondData(1, 4);
his[1] = new BondData(4, 5);
his[2] = new BondData(5, 6);
his[3] = new BondData(5, 7);
his[3].makeDoubleBond();
his[4] = new BondData(6, 8);
his[4].makeDoubleBond();
his[5] = new BondData(7, 9);
his[6] = new BondData(8, 9);
RGroupBonds.Add("HIS", his);
cys = new BondData[2];
cys[0] = new BondData(1, 4);
cys[1] = new BondData(4, 5);
RGroupBonds.Add("CYS", cys);
trp = new BondData[12];
trp[0] = new BondData(1, 4);
trp[1] = new BondData(4, 5);
trp[2] = new BondData(5, 6);
trp[2].makeDoubleBond();
trp[3] = new BondData(5, 7);
trp[4] = new BondData(6, 8);
trp[5] = new BondData(7, 9);
trp[5].makeDoubleBond();
trp[6] = new BondData(8, 9);
trp[7] = new BondData(7, 10);
trp[8] = new BondData(9, 11);
trp[9] = new BondData(10, 12);
trp[9].makeDoubleBond();
trp[10] = new BondData(11, 13);
trp[10].makeDoubleBond();
trp[11] = new BondData(12, 13);
RGroupBonds.Add("TRP", trp);
met = new BondData[4];
met[0] = new BondData(1, 4);
met[1] = new BondData(4, 5);
met[2] = new BondData(5, 6);
met[3] = new BondData(6, 7);
RGroupBonds.Add("MET", met);
asn = new BondData[4];
asn[0] = new BondData(1, 4);
asn[1] = new BondData(4, 5);
asn[2] = new BondData(5, 6);
asn[2].makeDoubleBond();
asn[3] = new BondData(5, 7);
RGroupBonds.Add("ASN", asn);
//Creates CPK color dictionary
colorDictionary = new Dictionary <string, Color>();
colorDictionary.Add("H", Color.white);
colorDictionary.Add("O", Color.red);
colorDictionary.Add("C", Color.black);
colorDictionary.Add("N", Color.blue);
colorDictionary.Add("CL", new Color(0, 255, 0));
colorDictionary.Add("S", Color.yellow);
colorDictionary.Add("P", new Color(255, 140, 0));
colorDictionary.Add("MG", new Color(0, 102, 0));
}
private void Process(BondData data)
{
Console.WriteLine("NewData({0}, {1}, {2})", data.Name, data.Price.ToString("000.00"), data.Timestamp.ToString("HH:mm:ss.FFF"));
}
