/// <summary>
/// parses the database cache file and populates the specified lists and interval trees
/// </summary>
public DataStructures.PredictionCache Read(ushort refIndex)
{
var indexEntry = GetIndexEntry(refIndex);
var bp = new BlockStream.BlockPosition {
FileOffset = indexEntry.FileOffset
};
_blockStream.SetBlockPosition(bp);
return(DataStructures.PredictionCache.Read(_reader, _lut, indexEntry, FileHeader));
}
public Prediction[] GetPredictions(ushort refIndex)
{
var indexEntry = _indexEntries[refIndex];
_blockStream.SetBlockPosition(indexEntry.FileOffset);
var predictions = new Prediction[indexEntry.Count];
for (var i = 0; i < indexEntry.Count; i++)
{
predictions[i] = Prediction.Read(_reader, Header.LookupTable);
}
return(predictions);
}
// ReSharper disable once UnusedParameter.Local
private static void ReadFromBlockStream(ICompressionAlgorithm compressionAlgorithm, MemoryStream ms, string expectedRandomString)
{
using (var blockStream = new BlockStream(compressionAlgorithm, ms, CompressionMode.Decompress))
using (var reader = new ExtendedBinaryReader(blockStream))
{
CheckWriteException(blockStream);
// grab the header
var header = GetHeader(blockStream, out var customHeader);
Assert.Equal(ExpectedGenomeAssembly, header.GenomeAssembly);
// sequential string check
CheckString(reader, expectedRandomString);
CheckString(reader, SmallString);
CheckString(reader, FinalString);
// random access string check
blockStream.SetBlockPosition(customHeader.DemoPosition);
CheckString(reader, SmallString);
}
}
// ReSharper disable once UnusedParameter.Local
private static void ReadFromBlockStream(ICompressionAlgorithm compressionAlgorithm, Stream ms, string expectedRandomString)
{
// grab the header
var header = DemoHeader.Read(ms);
Assert.Equal(ExpectedAssembly, header.Assembly);
using (var blockStream = new BlockStream(compressionAlgorithm, ms, CompressionMode.Decompress))
using (var reader = new ExtendedBinaryReader(blockStream))
{
CheckWriteException(blockStream);
// sequential string check
CheckString(reader, expectedRandomString);
CheckString(reader, SmallString);
CheckString(reader, FinalString);
// random access string check
blockStream.SetBlockPosition(header.Custom.FileOffset, header.Custom.InternalOffset);
//reader.Reset();
CheckString(reader, SmallString);
}
}
