Esempi in C# (CSharp) per Bio.SimilarityMatrices.SimilarityMatrix

Esempio n. 1

        /// <summary>
        /// Get the Blosum90 alignment score.
        /// </summary>
        /// <returns></returns>
        public double GetUnmaskedBlosum90AlignmentScore()
        {
            var blosum = new Bio.SimilarityMatrices.SimilarityMatrix(SimilarityMatrices.SimilarityMatrix.StandardSimilarityMatrix.Blosum90);

            return(MultiSequenceAlignment.MultipleAlignmentScoreFunction(this.UnmaskedAminoAcidAlignment.Sequences.ToList(), blosum, -5, -2));
        }

Esempio n. 2

File: SelectomeGene.cs Progetto: cpatmoore/bio

 /// <summary>
 /// Get the Blosum90 alignment score.
 /// </summary>
 /// <returns></returns>
 public double GetUnmaskedBlosum90AlignmentScore()
 {
     var blosum = new Bio.SimilarityMatrices.SimilarityMatrix(SimilarityMatrices.SimilarityMatrix.StandardSimilarityMatrix.Blosum90);
     return MultiSequenceAlignment.MultipleAlignmentScoreFunction(this.UnmaskedAminoAcidAlignment.Sequences.ToList(), blosum, -5, -2);
 }