public AnnotationProcessorOptions GetAnnotationOptions()
{
var result = new AnnotationProcessorOptions();
BeanUtils.CopyPropeties(this, result);
result.IsPileup = true;
result.InputFile = FilterResultFile;
return(result);
}
public override FilterProcessorOptions GetFilterOptions()
{
var result = new FilterProcessorOptions();
BeanUtils.CopyPropeties(this, result);
result.Config = Config;
result.IsPileup = true;
result.InputFile = BaseFilename;
result.OutputFile = FilterResultFile;
return(result);
}
public override FilterProcessorOptions GetFilterOptions()
{
var result = new FilterProcessorOptions();
BeanUtils.CopyPropeties(this, result);
result.Config = Config;
result.IsPileup = false;
result.IsValidation = true;
result.InputFile = BaseFilename;
result.OutputFile = GetLinuxFile(OutputSuffix + ".r.tsv");
return(result);
}