void OutputStrands(int resultNumber, SequenceDesignContext context, PrettyPrintContext pp, List<Strand> strands, long iteration)
{
List<string> prints = strands.ConvertAll<string>(s => pp.Cloned().PrettyPrint(BuiltIns.orient(s, Strand.Direction.FiveToThree)));
//
pp.NewLine();
string strStrandsCaption = context.Designer==null
? $"#{resultNumber}: Strands:"
: $"#{resultNumber}: Strands: score={context.ScaleScoreFormatted(context.Scoring.designScoreCur.Score)} iter={iteration:N0}";
string strStrandsUnderline = new string('-', strStrandsCaption.Length);
pp.AppendLine(strStrandsCaption);
pp.AppendLine(strStrandsUnderline);
pp.Indent();
//
AutoWidthTable formatter = new AutoWidthTable();
List<string> formats = new List<string>();
formatter.AddColumn(strands, s => s.DisplayName); formats.Add("{0}");
formatter.AddColumn(strands, s => s.Length); formats.Add(" len={0}");
if (context.Designer !=null)
{
formatter.AddColumn(strands, s => context.ScaleScoreFormatted(s.DesignScore)); formats.Add(" score={0}");
formatter.AddColumn(strands, s => true
? String.Format("{1}{0:F1}", (s.MeltInfo as IMeltInfo).TempCelsiusCur, (s.MeltInfo.hasGoal ? ":" : "="))
: "=n/a");
formats.Add(" Tm{0}");
}
formatter.AddColumn(prints, p => p); formats.Add(" {0}");
// formatter.AddColumn(strands, s => s.ChunckedNucleotidesWithDecorations); formats.Add(" {0}");
formatter.FormatTo(pp, formats.ToArray());
//
if (context.Designer != null)
{
pp.NewLine();
formatter = new AutoWidthTable();
formats = new List<string>();
formatter.AddColumn(strands, s => $"{s.DisplayName}.seed="); formats.Add("{0}");
formatter.AddColumn(strands, s => $"\"{s.ChunckedNucleotidesWithDecorations}\";"); formats.Add("{0}");
formatter.FormatTo(pp, formats.ToArray());
}
//
pp.Outdent();
}
void OutputDomains(SequenceDesignContext context, PrettyPrintContext pp, Model m)
{
List<Domain> domains = new List<Domain>();
domains.AddRange(m.AllDomains().Distinct<Domain>(new ChemicalEqualitor<Domain>()).Where<Domain>(d => (d.Length > 0)));
domains.Sort((x,y) => x.FullDisplayName.CompareTo(y.FullDisplayName));
//
pp.NewLine();
string strDomainsCaption = context.Designer==null ? "Domains" : "Domains (nucleotides as in #1 below)";
string strDoaminsUnderline = new string('-', strDomainsCaption.Length);
pp.AppendLine(strDomainsCaption);
pp.AppendLine(strDoaminsUnderline);
pp.Indent();
//
AutoWidthTable formatter = new AutoWidthTable();
List<string> formats = new List<string>();
formatter.AddColumn(domains, d => d.FullDisplayName); formats.Add("{0}");
formatter.AddColumn(domains, d => d.Id); formats.Add(" id={0}");
formatter.AddColumn(domains, d => d.Length); formats.Add(" len={0}");
if (context.Designer != null)
{
formatter.AddColumn(domains, d =>
{
double tm = ThermodynamicsData.ComputeThermodynamics(context.Designer.ExperimentalConfiguration, d.Nucleotides, 0).MeltTempCelsius;
return tm > 0 ? $"{tm:F1}" : "n/a";
});
formats.Add(" Tm={0}");
}
formatter.AddColumn(domains, d => d.ChunkedNucleotides); formats.Add(" {0}");
formatter.FormatTo(pp, formats.ToArray());
//
pp.Outdent();
}
