public async Task <ActionResult> Update(
[Bind(Prefix = "Entity.ID")] Guid id,
[Bind(Prefix = "Entity.RowVersion")] byte[] rowVersion,
[Bind(Prefix = "Args")] AnnotationEditArgs editArgs)
{
if (!ModelState.IsValid)
{
return(HttpStatusCodeResults.HttpBadRequest(ModelState));
}
var annotation = await Find <Annotation, Guid?>(id, "Entity", false);
if (annotation == null)
{
return(HttpNotFound("Entity not found in database."));
}
if (ModelState.IsValid)
{
return(await DbUpdateResult(
annotation,
rowVersion,
editArgs.EndEditAction));
}
else
{
return(await Edit(annotation, editArgs));
}
}
public async Task <ActionResult> SetTerm(
[Bind(Prefix = "Args")] AnnotationEditArgs editArgs)
{
if (!ModelState.IsValid)
{
return(HttpStatusCodeResults.HttpBadRequest(ModelState));
}
var annotation = Restore <Annotation>("Entity", true);
var termQuery = new TermQuery();
TryUpdateModel(termQuery, "TermQuery");
ModelState.Clear();
if (string.IsNullOrWhiteSpace(editArgs.SelectedTermId) == false)
{
if (await FaToolDbEntities.Exists <Annotation>(x => x.FK_Protein == annotation.FK_Protein && x.FK_Term == editArgs.SelectedTermId))
{
ModelState.AddModelError("Args.SelectedTermId", "Selected function term already mapped to protein.");
return(await SelectTerm(annotation, termQuery, editArgs));
}
else
{
annotation.FK_Term = editArgs.SelectedTermId;
}
}
else
{
ModelState.AddModelError("Args.SelectedTermId", "A term must be selected.");
return(await SelectTerm(annotation, termQuery, editArgs));
}
return(await Edit(annotation, editArgs));
}
public async Task <ActionResult> ChangeTerm(
[Bind(Prefix = "Args")] AnnotationEditArgs editArgs)
{
if (!ModelState.IsValid)
{
return(HttpStatusCodeResults.HttpBadRequest(ModelState));
}
var annotation = Restore <Annotation>("Entity", true);
return(await ChangeTerm(annotation, new TermQuery(), editArgs));
}
private async Task <ActionResult> Edit(Annotation annotation, AnnotationEditArgs editArgs)
{
ViewBag.Title = "Edit Annotation";
var model = new AnnotationEditViewModel();
model.Args = editArgs;
model.Entity = annotation;
model.GoEvidenceOptions = EnumSources.GetGoEvidenceOptions(annotation.EvidenceCode);
model.TermOptions = await FaToolDbEntities.GetSelectedTerm(annotation.FK_Term);
return(View("Edit", model));
}
public async Task <ActionResult> Create(Guid proteinId)
{
var annotation = FaToolDbEntities.Init <Annotation, Guid?>(Guid.NewGuid());
annotation.FK_Protein = proteinId;
annotation.EntryDate = DateTimeOffset.Now;
annotation.EvidenceCode = GOEvidences.Default.Code;
var editArgs = new AnnotationEditArgs();
editArgs.SaveAction = Url.Action("Insert");
editArgs.EndEditAction = Url.EntityGetAction("Proteins", proteinId, ProteinNavId.Functions);
return(await Edit(annotation, editArgs));
}
public async Task <ActionResult> Edit(Guid id)
{
var annotation = await FaToolDbEntities.Find <Annotation>(id);
if (annotation == null)
{
return(HttpNotFound("Entity not found in database."));
}
var editArgs = new AnnotationEditArgs();
editArgs.SaveAction = Url.Action("Update");
editArgs.EndEditAction = Url.EntityGetAction(annotation.ID);
return(await Edit(annotation, editArgs));
}
public async Task <ActionResult> Insert(
[Bind(Prefix = "Args")] AnnotationEditArgs editArgs)
{
if (!ModelState.IsValid)
{
return(HttpStatusCodeResults.HttpBadRequest(ModelState));
}
var annotation = Restore <Annotation>("Entity", false);
if (ModelState.IsValid)
{
return(await DbInsertResult(
annotation,
editArgs.EndEditAction));
}
else
{
return(await Edit(annotation, editArgs));
}
}
public async Task <ActionResult> SelectTerm(
[Bind(Prefix = "Args")] AnnotationEditArgs editArgs)
{
if (!ModelState.IsValid)
{
return(HttpStatusCodeResults.HttpBadRequest(ModelState));
}
var termQuery = new TermQuery();
if (TryUpdateModel(termQuery, "TermQuery"))
{
var annotation = Restore <Annotation>("Entity", true);
return(await SelectTerm(annotation, termQuery, editArgs));
}
else
{
var annotation = Restore <Annotation>("Entity", true);
return(await ChangeTerm(annotation, termQuery, editArgs));
}
}
private async Task <ActionResult> SelectTerm(Annotation annotation, TermQuery termQuery, AnnotationEditArgs editArgs)
{
ViewBag.Title = "Select Term";
var model = new AnnotationEditViewModel();
model.Args = editArgs;
model.Entity = annotation;
model.TermQuery = termQuery;
model.OntologyOptions = await FaToolDbEntities.GetOntologyOptions(model.TermQuery.OntologyId);
model.TermOptions = await FaToolDbEntities.GetTermOptions(termQuery, annotation.FK_Term);
if (model.TermOptions.Any())
{
return(View("SelectTerm", model));
}
else
{
ModelState.AddModelError("TermQuery.SearchValue", "No Terms found.");
return(View("ChangeTerm", model));
}
}
private async Task <ActionResult> ChangeTerm(Annotation annotation, TermQuery termQuery, AnnotationEditArgs editArgs)
{
ViewBag.Title = "Change Term";
var model = new AnnotationEditViewModel();
model.Args = editArgs;
model.Entity = annotation;
model.TermQuery = termQuery;
model.OntologyOptions = await FaToolDbEntities.GetOntologyOptions(model.TermQuery.OntologyId);
return(View("ChangeTerm", model));
}
