private void createAccessionPopulation(AccessionViewModel accession)
{
Family family = accession.ToFamily();
try
{
u_repo.SaveFamily(family);
}
catch (Exception e)
{
//TODO:write to logging
throw new AccessionException("Unable to create population");
}
Genotype genotype = accession.ToGenotype();
genotype.Family = family;
genotype.FamilyId = family.Id;
if (accession.IsBase)
{
genotype.Year = accession.FamilyBaseGenotypeYear;
genotype.Note = accession.FamilyBaseGenotypeNote;
genotype.IsRoot = true;
}
try
{
u_repo.SaveGenotype(genotype);
}
catch (Exception e)
{
u_repo.DeleteFamily(family);
//TODO:write to logging
throw new AccessionException("Unable to create selection");
}
family.BaseGenotype = genotype;
family.BaseGenotypeId = genotype.Id;
u_repo.SaveFamily(family);
accession.Id = genotype.Id;
}
private void updateAccession(AccessionViewModel accession)
{
// update genotype information
Genotype oldGenotype = u_repo.GetGenotype(accession.Id);
var oldGivenName = oldGenotype.GivenName;
var oldOriginalName = oldGenotype.OriginalName;
Genotype genotype = accession.ToGenotype();
genotype.Family = oldGenotype.Family;
genotype.FamilyId = oldGenotype.FamilyId;
genotype.CrossPlanId = oldGenotype.CrossPlanId;
genotype.IsPopulation = accession.IsPopulation;
if (accession.Id <= 0)
{
genotype.Family = u_repo.GetFamily(genotype.FamilyId);
}
if (accession.IsBase)
{
genotype.Year = accession.FamilyBaseGenotypeYear;
genotype.Note = accession.FamilyBaseGenotypeNote;
genotype.IsRoot = true;
}
if (genotype.GivenName != oldGivenName && !oldGivenName.IsNullOrWhiteSpace())
{
genotype.Alias2 = genotype.Alias1;
genotype.Alias1 = oldGivenName;
}
// update family information
if (accession.IsBase)
{
Family oldFamily = u_repo.GetFamily(accession.FamilyId);
// check origin name and cross number
Family family = accession.ToFamily();
if (family.CrossTypeId.HasValue)
{
family.CrossType = u_repo.GetCrossType(accession.FamilyCrossTypeId.Value);
}
if (family.OriginId.HasValue)
{
family.Origin = u_repo.GetOrigin(accession.FamilyOriginId.Value);
}
if (oldFamily.OriginalName != family.OriginalName && !oldFamily.OriginalName.IsNullOrWhiteSpace())
{
genotype.Alias2 = genotype.Alias1;
genotype.Alias1 = oldOriginalName;
u_repo.UpdateGeotypesAlias(family.Id, oldOriginalName);
}
family.BaseGenotype = oldFamily.BaseGenotype;
family.BaseGenotypeId = oldFamily.BaseGenotypeId;
family.Genus = oldFamily.Genus;
family.Genotypes = oldFamily.Genotypes;
if (family.FemaleParent.HasValue)
{
family.FemaleGenotype = u_repo.GetGenotype(family.FemaleParent.Value);
}
if (family.MaleParent.HasValue)
{
family.MaleGenotype = u_repo.GetGenotype(family.MaleParent.Value);
}
if (family.OriginId.HasValue)
{
family.Origin = u_repo.GetOrigin(family.OriginId.Value);
}
u_repo.SaveFamily(family);
}
u_repo.SaveGenotype(genotype);
if (genotype.CrossPlanId.HasValue)
{
UpdateCrossPlanFromAccession(genotype);
}
}
