private void peptideMassMapProteinDigestToolStripMenuItem_Click( object sender, EventArgs e )
{
PeptideMassMapProteinDigestForm peptideMassMapProteinDigestForm = new PeptideMassMapProteinDigestForm();
peptideMassMapProteinDigestForm.ShowDialog( this );
if( peptideMassMapProteinDigestForm.DialogResult == DialogResult.Cancel )
return;
if( peptideMassMapProteinDigestForm.MsDigestReportXml != null )
{
Map<string, List<Pair<double, int>>> pointAnnotations = new Map<string, List<Pair<double, int>>>();
XmlTextReader reader = new XmlTextReader( new StringReader( peptideMassMapProteinDigestForm.MsDigestReportXml ) );
double peptideMonoMz = 0, peptideAvgMz = 0;
int peptideCharge = 0;
string peptideSequence;
int previousLabelCount = CurrentGraphForm.CurrentPointAnnotations.Count;
while( reader.Read() )
{
switch( reader.NodeType )
{
case XmlNodeType.Element:
if( reader.Name == "peptide" )
{
peptideMonoMz = peptideAvgMz = 0;
peptideCharge = 0;
peptideSequence = "";
} else if( reader.Name == "mi_m_over_z" )
{
peptideMonoMz = Convert.ToDouble( reader.ReadElementContentAsString() );
} else if( reader.Name == "av_m_over_z" )
{
peptideAvgMz = Convert.ToDouble( reader.ReadElementContentAsString() );
} else if( reader.Name == "charge" )
{
peptideCharge = Convert.ToInt32( reader.ReadElementContentAsString() );
} else if( reader.Name == "database_sequence" )
{
peptideSequence = reader.ReadElementContentAsString();
if( peptideMonoMz > 0 ) pointAnnotations[peptideSequence].Add( new Pair<double, int>( peptideMonoMz, peptideCharge ) );
if( peptideAvgMz > 0 ) pointAnnotations[peptideSequence].Add( new Pair<double, int>( peptideAvgMz, peptideCharge ) );
}
break;
}
}
CurrentGraphForm.ScanAnnotationSettings.setScanLabels( pointAnnotations );
if( CurrentGraphForm.CurrentPointAnnotations.Count > previousLabelCount )
CurrentGraphForm.updateGraph();
}
}
private void peptideMassMapProteinDigestToolStripMenuItem_Click(object sender, EventArgs e)
{
PeptideMassMapProteinDigestForm peptideMassMapProteinDigestForm = new PeptideMassMapProteinDigestForm();
peptideMassMapProteinDigestForm.ShowDialog(this);
if (peptideMassMapProteinDigestForm.DialogResult == DialogResult.Cancel)
{
return;
}
if (peptideMassMapProteinDigestForm.MsDigestReportXml != null)
{
Map <string, List <Pair <double, int> > > pointAnnotations = new Map <string, List <Pair <double, int> > >();
XmlTextReader reader = new XmlTextReader(new StringReader(peptideMassMapProteinDigestForm.MsDigestReportXml));
double peptideMonoMz = 0, peptideAvgMz = 0;
int peptideCharge = 0;
string peptideSequence;
int previousLabelCount = CurrentGraphForm.CurrentPointAnnotations.Count;
while (reader.Read())
{
switch (reader.NodeType)
{
case XmlNodeType.Element:
if (reader.Name == "peptide")
{
peptideMonoMz = peptideAvgMz = 0;
peptideCharge = 0;
peptideSequence = "";
}
else if (reader.Name == "mi_m_over_z")
{
peptideMonoMz = Convert.ToDouble(reader.ReadElementContentAsString());
}
else if (reader.Name == "av_m_over_z")
{
peptideAvgMz = Convert.ToDouble(reader.ReadElementContentAsString());
}
else if (reader.Name == "charge")
{
peptideCharge = Convert.ToInt32(reader.ReadElementContentAsString());
}
else if (reader.Name == "database_sequence")
{
peptideSequence = reader.ReadElementContentAsString();
if (peptideMonoMz > 0)
{
pointAnnotations[peptideSequence].Add(new Pair <double, int>(peptideMonoMz, peptideCharge));
}
if (peptideAvgMz > 0)
{
pointAnnotations[peptideSequence].Add(new Pair <double, int>(peptideAvgMz, peptideCharge));
}
}
break;
}
}
if (CurrentGraphForm.CurrentScan.IsMassSpectrum)
{
CurrentGraphForm.AnnotationSettings.setScanLabels(pointAnnotations);
if (CurrentGraphForm.CurrentPointAnnotations.Count > previousLabelCount)
{
CurrentGraphForm.updateGraph();
}
}
}
}
