public void SelectTargetsAndDecoys(out ScoredGroupPeaksSet targetScoredGroupPeaksSet, out ScoredGroupPeaksSet decoyScoredGroupPeaksSet)
{
targetScoredGroupPeaksSet = new ScoredGroupPeaksSet();
decoyScoredGroupPeaksSet = new ScoredGroupPeaksSet();
foreach (var scoredGroupPeaks in _scoredGroupPeaksList)
{
var secondHighestPeak = scoredGroupPeaks.SecondHighestPeak;
if (!secondHighestPeak.IsEmpty)
{
var decoyScoredGroupPeaks = new ScoredGroupPeaks();
decoyScoredGroupPeaks.Add(secondHighestPeak);
decoyScoredGroupPeaksSet.Add(decoyScoredGroupPeaks);
}
// Copy all other peaks to target.
var targetScoredGroupPeaks = new ScoredGroupPeaks();
foreach (var peak in scoredGroupPeaks.ScoredPeaks)
{
if (!ReferenceEquals(peak.Features, secondHighestPeak.Features))
{
targetScoredGroupPeaks.Add(peak);
}
}
targetScoredGroupPeaksSet.Add(targetScoredGroupPeaks);
}
}
public void SelectTargetsAndDecoys(out ScoredGroupPeaksSet targetScoredGroupPeaksSet, out ScoredGroupPeaksSet decoyScoredGroupPeaksSet)
{
targetScoredGroupPeaksSet = new ScoredGroupPeaksSet();
decoyScoredGroupPeaksSet = new ScoredGroupPeaksSet();
foreach (var scoredGroupPeaks in _scoredGroupPeaksList)
{
var secondHighestPeak = scoredGroupPeaks.SecondHighestPeak;
if (secondHighestPeak != null)
{
var decoyScoredGroupPeaks = new ScoredGroupPeaks();
decoyScoredGroupPeaks.Add(secondHighestPeak);
decoyScoredGroupPeaksSet.Add(decoyScoredGroupPeaks);
}
// Copy all other peaks to target.
var targetScoredGroupPeaks = new ScoredGroupPeaks();
foreach (var peak in scoredGroupPeaks.ScoredPeaks)
{
if (peak != secondHighestPeak)
{
targetScoredGroupPeaks.Add(peak);
}
}
targetScoredGroupPeaksSet.Add(targetScoredGroupPeaks);
}
}
public ScoredGroupPeaksSet(IEnumerable <IList <float[]> > groupList)
{
foreach (var group in groupList)
{
var scoredGroupPeaks = new ScoredGroupPeaks();
foreach (var features in group)
{
scoredGroupPeaks.Add(new ScoredPeak(features));
}
_scoredGroupPeaksList.Add(scoredGroupPeaks);
}
}
public ScoredGroupPeaksSet(IEnumerable <IList <float[]> > groupList, int capacity)
{
_scoredGroupPeaksList = new List <ScoredGroupPeaks>(capacity);
foreach (var group in groupList)
{
var scoredGroupPeaks = new ScoredGroupPeaks(group.Count);
foreach (var features in group)
{
scoredGroupPeaks.Add(new ScoredPeak(features));
}
_scoredGroupPeaksList.Add(scoredGroupPeaks);
}
}