public override PrositRTInput.PrositPeptideInput CreatePrositInputRow(SrmSettings settings, PeptideDocNodeWrapper skylineInput,
out PrositException exception)
{
var sequence = PrositHelpers.EncodeSequence(settings, (PeptideDocNode)skylineInput, IsotopeLabelType.light, out exception);
if (sequence == null)
{
return(null);
}
return(new PrositRTInput.PrositPeptideInput(sequence));
}
public override PrositIntensityInput.PrositPrecursorInput CreatePrositInputRow(SrmSettings settings, PeptidePrecursorNCE skylineInput, out PrositException exception)
{
var peptideSequence = PrositHelpers.EncodeSequence(settings, skylineInput.NodePep, IsotopeLabelType.light, out exception);
if (peptideSequence == null) // equivalently, exception != null
{
return(null);
}
var precursorCharge = PrositHelpers.OneHotEncode(skylineInput.NodeGroup.PrecursorCharge - 1, PrositConstants.PRECURSOR_CHARGES);
return(new PrositIntensityInput.PrositPrecursorInput(peptideSequence, precursorCharge, skylineInput.NCE.Value / 100.0f));
}