public static void Main(String[] args)
{
if (args.Length < 2 || args.Length > 3)
{
Console.WriteLine("Usage: FlattenModel [-p] input-filename output-filename");
Console.WriteLine(" -p : list unused ports");
Environment.Exit(2);
}
SBMLReader reader = new SBMLReader();
SBMLWriter writer = new SBMLWriter();
bool leavePorts = false;
SBMLDocument doc;
if (args.Length == 2)
{
doc = reader.readSBML(args[0]);
}
else
{
doc = reader.readSBML(args[1]);
leavePorts = true;
}
if (doc.getErrorLog().getNumFailsWithSeverity(libsbml.LIBSBML_SEV_ERROR) > 0)
{
doc.printErrors();
}
else
{
/* create a new conversion properties structure */
ConversionProperties props = new ConversionProperties();
/* add an option that we want to flatten */
props.addOption("flatten comp", true, "flatten comp");
/* add an option to leave ports if the user has requested this */
props.addOption("leavePorts", leavePorts, "unused ports should be listed in the flattened model");
/* perform the conversion */
int result = doc.convert(props);
if (result != libsbml.LIBSBML_OPERATION_SUCCESS)
{
Console.WriteLine("conversion failed ... ({0})", result);
doc.printErrors();
Environment.Exit(3);
}
if (args.Length == 2)
{
writer.writeSBML(doc, args[1]);
}
else
{
writer.writeSBML(doc, args[2]);
}
}
}
public static void Main(string[] args)
{
if (args.Length != 2)
{
string myname = Path.GetFileName(Environment.GetCommandLineArgs()[0]);
Console.WriteLine("Usage: {0} input-filename output-filename", myname);
Environment.Exit(1);
}
string inputFile = args[0];
string outputFile = args[1];
if ( ! File.Exists(inputFile) )
{
Console.WriteLine("[Error] {0} : No such file.", inputFile);
Environment.Exit(1);
}
var now = DateTime.Now.Ticks;
SBMLReader reader = new SBMLReader();
SBMLWriter writer = new SBMLWriter();
SBMLDocument sbmlDoc = reader.readSBML(inputFile);
if ( sbmlDoc.getErrorLog().getNumFailsWithSeverity(libsbml.LIBSBML_SEV_ERROR) > 0)
{
sbmlDoc.printErrors();
Console.WriteLine("[Error] Cannot read {0}", inputFile);
Environment.Exit(1);
}
Console.WriteLine("Read {0} in {1}", inputFile, new TimeSpan(DateTime.Now.Ticks - now).TotalMilliseconds);
/* create a new conversion properties structure */
ConversionProperties props = new ConversionProperties();
/* add an option that we want to convert a model with
L3 FBC to L2 with COBRA annotation */
props.addOption("convert fbc to cobra", true, "Convert FBC model to Cobra model");
now = DateTime.Now.Ticks;
/* perform the conversion */
int result = sbmlDoc.convert(props);
if (result != libsbml.LIBSBML_OPERATION_SUCCESS)
{
Console.WriteLine ("conversion failed ... ");
Environment.Exit(3);
}
writer.writeSBML(sbmlDoc, outputFile);
Console.WriteLine("[OK] converted to FBC from {0} and wrote to {1} (in {2} msec)", inputFile, outputFile, new TimeSpan(DateTime.Now.Ticks - now).TotalMilliseconds);
}
public static void Main(string[] args)
{
if (args.Length != 3)
{
string myname = Path.GetFileName(Environment.GetCommandLineArgs()[0]);
Console.WriteLine("Usage: {0} input-filename package-to-strip output-filename", myname);
Environment.Exit(1);
}
string inputFile = args[0];
string packageToStrip = args[1];
string outputFile = args[2];
if ( ! File.Exists(inputFile) )
{
Console.WriteLine("[Error] {0} : No such file.", inputFile);
Environment.Exit(1);
}
SBMLReader reader = new SBMLReader();
SBMLWriter writer = new SBMLWriter();
SBMLDocument sbmlDoc = reader.readSBML(inputFile);
if ( sbmlDoc.getErrorLog().getNumFailsWithSeverity(libsbml.LIBSBML_SEV_ERROR) > 0)
{
sbmlDoc.printErrors();
Console.WriteLine("[Error] Cannot read {0}", inputFile);
Environment.Exit(1);
}
/* create a new conversion properties structure */
ConversionProperties props = new ConversionProperties();
/* add an option that we want to strip a given package */
props.addOption("stripPackage", true, "Strip SBML Level 3 package constructs from the model");
/* add an option with the package we want to remove */
props.addOption("package", packageToStrip, "Name of the SBML Level 3 package to be stripped");
/* perform the conversion */
if (sbmlDoc.convert(props) != libsbml.LIBSBML_OPERATION_SUCCESS)
{
Console.WriteLine ("conversion failed ... ");
Environment.Exit(3);
}
writer.writeSBML(sbmlDoc, outputFile);
Console.WriteLine("[OK] Stripped package '{0}' from {1} and wrote to {2}", packageToStrip, inputFile, outputFile);
}
public static void Main(string[] args)
{
if (args.Length != 2)
{
string myname = Path.GetFileName(Environment.GetCommandLineArgs()[0]);
Console.WriteLine("Usage: {0} input-filenameoutput-filename", myname);
Environment.Exit(1);
}
string inputFile = args[0];
string outputFile = args[1];
if ( ! File.Exists(inputFile) )
{
Console.WriteLine("[Error] {0} : No such file.", inputFile);
Environment.Exit(1);
}
SBMLReader reader = new SBMLReader();
SBMLWriter writer = new SBMLWriter();
SBMLDocument sbmlDoc = reader.readSBML(inputFile);
if ( sbmlDoc.getErrorLog().getNumFailsWithSeverity(libsbml.LIBSBML_SEV_ERROR) > 0)
{
sbmlDoc.printErrors();
Console.WriteLine("[Error] Cannot read {0}", inputFile);
Environment.Exit(1);
}
/* create a new conversion properties structure */
ConversionProperties props = new ConversionProperties();
/* add an option that we want to promote parameters */
props.addOption("promoteLocalParameters", true, "Promotes all Local Parameters to Global ones");
/* perform the conversion */
if (sbmlDoc.convert(props) != libsbml.LIBSBML_OPERATION_SUCCESS)
{
Console.WriteLine ("conversion failed ... ");
Environment.Exit(3);
}
writer.writeSBML(sbmlDoc, outputFile);
Console.WriteLine("[OK] promoted paramters from {0} and wrote to {1}", inputFile, outputFile);
}
/**
* Returns the default properties of this converter.
*
* A given converter exposes one or more properties that can be adjusted
* in order to influence the behavior of the converter. This method
* returns the @em default property settings for this converter. It is
* meant to be called in order to discover all the settings for the
* converter object.
*
* @return the ConversionProperties object describing the default properties
* for this converter.
*/
public ConversionProperties getDefaultProperties()
{
ConversionProperties ret = new ConversionProperties(libsbmlPINVOKE.SBMLFunctionDefinitionConverter_getDefaultProperties(swigCPtr), true);
return ret;
}
public static string ConvertToL2(string model)
{
try
{
var doc = libsbml.readSBMLFromString(model);
if (doc.isPackageEnabled("fbc"))
doc.enablePackageInternal(doc.getNamespaces().getURI("fbc"), "fbc", false);
var properties = new ConversionProperties(new SBMLNamespaces(2, 4));
properties.addOption("strict", false);
properties.addOption("setLevelAndVersion", true);
properties.addOption("ignorePackages", true);
doc.convert(properties);
return libsbml.writeSBMLToString(doc);
}
catch// (Exception)
{
return model;
}
}
/**
* Returns the default properties of this converter.
*
* A given converter exposes one or more properties that can be adjusted
* in order to influence the behavior of the converter. This method
* returns the @em default property settings for this converter. It is
* meant to be called in order to discover all the settings for the
* converter object.
*
* @return the ConversionProperties object describing the default properties
* for this converter.
*/
public new ConversionProperties getDefaultProperties()
{
ConversionProperties ret = new ConversionProperties(libsbmlPINVOKE.SBMLLevelVersionConverter_getDefaultProperties(swigCPtr), true);
return ret;
}
private string WriteUsingFBC(int version = 1)
{
var doc = libsbml.readSBMLFromString(SBML);
var model = doc.getModel();
if (doc.getLevel() < 3)
{
var properties = new ConversionProperties(new SBMLNamespaces(3, 1));
properties.addOption("strict", false);
properties.addOption("setLevelAndVersion", true);
properties.addOption("ignorePackages", true);
doc.convert(properties);
}
if (version == 1)
{
doc.enablePackage(FbcExtension.getXmlnsL3V1V2(), "fbc", false);
doc.enablePackage(FbcExtension.getXmlnsL3V1V1(), "fbc", true);
}
else if (version == 2)
{
doc.enablePackage(FbcExtension.getXmlnsL3V1V1(), "fbc", false);
doc.enablePackage(FbcExtension.getXmlnsL3V1V2(), "fbc", true);
}
doc.setPackageRequired("fbc", false);
var plugin = (FbcModelPlugin)model.getPlugin("fbc");
if (plugin == null)
{
throw new Exception("Could not save using Fbc. Please check that your model contains no errors!");
}
plugin.getListOfFluxBounds().clear();
plugin.getListOfGeneAssociations().clear();
plugin.getListOfObjectives().clear();
plugin.getListOfGeneProducts().clear();
if (version == 1)
{
plugin.unsetStrict();
foreach (var constraint in Constraints)
{
var bound = plugin.createFluxBound();
bound.setReaction(constraint.Id);
bound.setOperation(ToFbcString(constraint.Operator));
bound.setValue(constraint.Value);
}
}
else
{
plugin.setStrict(false);
foreach (var constraint in Constraints)
{
var reaction = model.getReaction(constraint.Id);
if (reaction == null) continue;
var rplug = (FbcReactionPlugin)reaction.getPlugin("fbc");
if (rplug == null) continue;
switch (constraint.Operator)
{
case lpsolve_constr_types.LE:
{
var param = model.createParameter();
param.setId(string.Format("fb_{0}_ub", reaction.getId()));
param.setConstant(true);
param.setValue(constraint.Value);
rplug.setUpperFluxBound(param.getId());
}
break;
case lpsolve_constr_types.EQ:
{
var param = model.createParameter();
param.setId(string.Format("fb_{0}_ub", reaction.getId()));
param.setConstant(true);
param.setValue(constraint.Value);
rplug.setUpperFluxBound(param.getId());
param = model.createParameter();
param.setId(string.Format("fb_{0}_lb", reaction.getId()));
param.setConstant(true);
param.setValue(constraint.Value);
rplug.setLowerFluxBound(param.getId());
}
break;
case lpsolve_constr_types.GE:
{
var param = model.createParameter();
param.setId(string.Format("fb_{0}_lb", reaction.getId()));
param.setConstant(true);
param.setValue(constraint.Value);
rplug.setLowerFluxBound(param.getId());
}
break;
default:
break;
}
}
}
var active = plugin.createObjective();
active.setId("objective1");
active.setType(Mode == FBA_Mode.maximize ? "maximize" : "minimize");
foreach (var objective in Objectives)
{
var current = active.createFluxObjective();
current.setReaction(objective.Id);
current.setCoefficient(objective.Value);
}
plugin.setActiveObjectiveId("objective1");
return libsbml.writeSBMLToString(doc);
}
/**
* Returns the default properties of this converter.
*
* A given converter exposes one or more properties that can be adjusted
* in order to influence the behavior of the converter. This method
* returns the @em default property settings for this converter. It is
* meant to be called in order to discover all the settings for the
* converter object. The run-time properties of the converter object can
* be adjusted by using the method
* SBMLConverter::setProperties(ConversionProperties props).
*
* @return the default properties for the converter.
*
* @see setProperties(@if java ConversionProperties@endif)
* @see matchesProperties(@if java ConversionProperties@endif)
*/
public virtual ConversionProperties getDefaultProperties()
{
ConversionProperties ret = new ConversionProperties((SwigDerivedClassHasMethod("getDefaultProperties", swigMethodTypes3) ? libsbmlPINVOKE.SBMLConverter_getDefaultPropertiesSwigExplicitSBMLConverter(swigCPtr) : libsbmlPINVOKE.SBMLConverter_getDefaultProperties(swigCPtr)), true);
return ret;
}
/**
* Returns the converter that best matches the given configuration
* properties.
*
* Many converters provide the ability to configure their behavior. This
* is realized through the use of @em properties that offer different @em
* options. The present method allows callers to search for converters
* that have specific property values. Callers can do this by creating a
* ConversionProperties object, adding the desired option(s) to the
* object, then passing the object to this method.
*
* @param props a ConversionProperties object defining the properties
* to match against.
*
* @return the converter matching the properties, or @c null if no
* suitable converter is found.
*
* @see getConverterByIndex(@if java int@endif)
*/
public SBMLConverter getConverterFor(ConversionProperties props)
{
SBMLConverter ret
= (SBMLConverter) libsbml.DowncastSBMLConverter(libsbmlPINVOKE.SBMLConverterRegistry_getConverterFor(swigCPtr, ConversionProperties.getCPtr(props)), false);
if (libsbmlPINVOKE.SWIGPendingException.Pending) throw libsbmlPINVOKE.SWIGPendingException.Retrieve();
return ret;
}
public string WriteAsCobraAnnotation()
{
var doc = libsbml.readSBMLFromString(SBML);
var model = doc.getModel();
if (doc.getLevel() < 3)
{
var properties = new ConversionProperties(new SBMLNamespaces(3, 1));
properties.addOption("strict", false);
properties.addOption("setLevelAndVersion", true);
properties.addOption("ignorePackages", true);
doc.convert(properties);
}
doc.enablePackage(FbcExtension.getXmlnsL3V1V1(), "fbc", true);
var plugin = (FbcModelPlugin)model.getPlugin("fbc");
if (plugin == null)
{
throw new Exception("Could not save using Fbc. Please check that your model contains no errors!");
}
plugin.getListOfFluxBounds().clear();
plugin.getListOfGeneAssociations().clear();
plugin.getListOfObjectives().clear();
foreach (var constraint in Constraints)
{
var bound = plugin.createFluxBound();
bound.setReaction(constraint.Id);
bound.setOperation(ToFbcString(constraint.Operator));
bound.setValue(constraint.Value);
}
var active = plugin.createObjective();
active.setId("objective1");
active.setType(Mode == FBA_Mode.maximize ? "maximize" : "minimize");
foreach (var objective in Objectives)
{
var current = active.createFluxObjective();
current.setReaction(objective.Id);
current.setCoefficient(objective.Value);
}
plugin.setActiveObjectiveId("objective1");
// convert to COBRA
var props = new ConversionProperties();
props.addOption("convert fbc to cobra", true, "Convert FBC model to Cobra model");
if (doc.convert(props) != libsbml.LIBSBML_OPERATION_SUCCESS)
{
throw new Exception(doc.getErrorLog().toString());
}
model = doc.getModel();
plugin = (FbcModelPlugin)model.getPlugin("fbc");
if (plugin != null)
{
plugin.getListOfGeneProducts().clear();
plugin.getListOfGeneAssociations().clear();
plugin.getListOfFluxBounds().clear();
plugin.getListOfObjectives().clear();
}
return libsbml.writeSBMLToString(doc);
}
ConversionProperties(ConversionProperties orig) : this(libsbmlPINVOKE.new_ConversionProperties__SWIG_2(ConversionProperties.getCPtr(orig)), true)
{
if (libsbmlPINVOKE.SWIGPendingException.Pending)
{
throw libsbmlPINVOKE.SWIGPendingException.Retrieve();
}
}
private IntPtr SwigDirectorgetProperties()
{
return(ConversionProperties.getCPtr(getProperties()).Handle);
}
int setProperties(ConversionProperties props)
{
int ret = (SwigDerivedClassHasMethod("setProperties", swigMethodTypes7) ? libsbmlPINVOKE.SBMLConverter_setPropertiesSwigExplicitSBMLConverter(swigCPtr, ConversionProperties.getCPtr(props)) : libsbmlPINVOKE.SBMLConverter_setProperties(swigCPtr, ConversionProperties.getCPtr(props)));
return(ret);
}
bool matchesProperties(ConversionProperties props)
{
bool ret = (SwigDerivedClassHasMethod("matchesProperties", swigMethodTypes5) ? libsbmlPINVOKE.SBMLConverter_matchesPropertiesSwigExplicitSBMLConverter(swigCPtr, ConversionProperties.getCPtr(props)) : libsbmlPINVOKE.SBMLConverter_matchesProperties(swigCPtr, ConversionProperties.getCPtr(props)));
if (libsbmlPINVOKE.SWIGPendingException.Pending)
{
throw libsbmlPINVOKE.SWIGPendingException.Retrieve();
}
return(ret);
}
ConversionProperties getDefaultProperties()
{
ConversionProperties ret = new ConversionProperties((SwigDerivedClassHasMethod("getDefaultProperties", swigMethodTypes3) ? libsbmlPINVOKE.SBMLConverter_getDefaultPropertiesSwigExplicitSBMLConverter(swigCPtr) : libsbmlPINVOKE.SBMLConverter_getDefaultProperties(swigCPtr)), true);
return(ret);
}
SBMLConverter getConverterFor(ConversionProperties props)
{
IntPtr cPtr = libsbmlPINVOKE.SBMLConverterRegistry_getConverterFor(swigCPtr, ConversionProperties.getCPtr(props));
SBMLConverter ret = (cPtr == IntPtr.Zero) ? null : new SBMLConverter(cPtr, false);
if (libsbmlPINVOKE.SWIGPendingException.Pending)
{
throw libsbmlPINVOKE.SWIGPendingException.Retrieve();
}
return(ret);
}
ConversionProperties getDefaultProperties()
{
ConversionProperties ret = new ConversionProperties(libsbmlPINVOKE.SBMLInitialAssignmentConverter_getDefaultProperties(swigCPtr), true);
return(ret);
}
/**
* Returns the converter that best matches the given configuration
* properties.
*
* Many converters provide the ability to configure their behavior. This
* is realized through the use of @em properties that offer different @em
* options. The present method allows callers to search for converters
* that have specific property values. Callers can do this by creating a
* ConversionProperties object, adding the desired option(s) to the
* object, then passing the object to this method.
*
* @param props a ConversionProperties object defining the properties
* to match against.
*
* @return the converter matching the properties, or @c null if no
* suitable converter is found.
*
* @see getConverterByIndex(@if java int index@endif)
*/
public SBMLConverter getConverterFor(ConversionProperties props)
{
IntPtr cPtr = libsbmlPINVOKE.SBMLConverterRegistry_getConverterFor(swigCPtr, ConversionProperties.getCPtr(props));
SBMLConverter ret = (cPtr == IntPtr.Zero) ? null : new SBMLConverter(cPtr, false);
if (libsbmlPINVOKE.SWIGPendingException.Pending) throw libsbmlPINVOKE.SWIGPendingException.Retrieve();
return ret;
}
internal static HandleRef getCPtr(ConversionProperties obj)
{
return((obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr);
}
/**
* Sets the configuration properties to be used by this converter.
*
* @param props the ConversionProperties object defining the properties
* to set.
*
* @return integer value indicating the success/failure of the operation.
* @if clike The value is drawn from the enumeration
* #OperationReturnValues_t. @endif The set of possible values that may
* be returned ultimately depends on the specific subclass of
* SBMLConverter being used, but the default method can return the
* following values:
* @li @link libsbml#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS@endlink
* @li @link libsbml#LIBSBML_OPERATION_FAILED LIBSBML_OPERATION_FAILED@endlink
*
* @see getProperties()
* @see matchesProperties(@if java ConversionProperties@endif)
*/
public virtual int setProperties(ConversionProperties props)
{
int ret = (SwigDerivedClassHasMethod("setProperties", swigMethodTypes7) ? libsbmlPINVOKE.SBMLConverter_setPropertiesSwigExplicitSBMLConverter(swigCPtr, ConversionProperties.getCPtr(props)) : libsbmlPINVOKE.SBMLConverter_setProperties(swigCPtr, ConversionProperties.getCPtr(props)));
return ret;
}
/**
* Returns the default properties of this converter.
*
* A given converter exposes one or more properties that can be adjusted
* in order to influence the behavior of the converter. This method
* returns the @em default property settings for this converter. It is
* meant to be called in order to discover all the settings for the
* converter object.
*
* @return the ConversionProperties object describing the default properties
* for this converter.
*/
public ConversionProperties getDefaultProperties()
{
ConversionProperties ret = new ConversionProperties(libsbmlPINVOKE.SBMLStripPackageConverter_getDefaultProperties(swigCPtr), true);
return ret;
}
/**
* Copy constructor.
*
* @param orig the object to copy.
*/
public ConversionProperties(ConversionProperties orig)
: this(libsbmlPINVOKE.new_ConversionProperties__SWIG_2(ConversionProperties.getCPtr(orig)), true)
{
if (libsbmlPINVOKE.SWIGPendingException.Pending) throw libsbmlPINVOKE.SWIGPendingException.Retrieve();
}
/**
* Converts this document using the converter that best matches
* the given conversion properties.
*
* @param props the conversion properties to use
*
*
* @return integer value indicating success/failure of the
* function. @if clike The value is drawn from the
* enumeration #OperationReturnValues_t. @endif The possible values
* returned by this function are:
* @li @link libsbml#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS@endlink
* @li @link libsbml#LIBSBML_OPERATION_FAILED LIBSBML_OPERATION_FAILED@endlink
* @li @link libsbml#LIBSBML_CONV_CONVERSION_NOT_AVAILABLE LIBSBML_CONV_CONVERSION_NOT_AVAILABLE@endlink
*/
public new int convert(ConversionProperties props)
{
int ret = libsbmlPINVOKE.SBMLDocument_convert(swigCPtr, ConversionProperties.getCPtr(props));
if (libsbmlPINVOKE.SWIGPendingException.Pending) throw libsbmlPINVOKE.SWIGPendingException.Retrieve();
return ret;
}
internal static HandleRef getCPtrAndDisown(ConversionProperties obj)
{
HandleRef ptr = new HandleRef(null, IntPtr.Zero);
if (obj != null)
{
ptr = obj.swigCPtr;
obj.swigCMemOwn = false;
}
return ptr;
}
/**
* Returns @c true if this converter matches the given properties.
*
* Given a ConversionProperties object @p props, this method checks that @p
* props possesses an option value to enable this converter. If it does,
* this method returns @c true.
*
* @param props the properties to match.
*
* @return @c true if the properties @p props would match the necessary
* properties for this type of converter, @c false otherwise.
*/
public virtual bool matchesProperties(ConversionProperties props)
{
bool ret = (SwigDerivedClassHasMethod("matchesProperties", swigMethodTypes5) ? libsbmlPINVOKE.SBMLConverter_matchesPropertiesSwigExplicitSBMLConverter(swigCPtr, ConversionProperties.getCPtr(props)) : libsbmlPINVOKE.SBMLConverter_matchesProperties(swigCPtr, ConversionProperties.getCPtr(props)));
if (libsbmlPINVOKE.SWIGPendingException.Pending) throw libsbmlPINVOKE.SWIGPendingException.Retrieve();
return ret;
}
private void InitializeFromCobraAnnotation(string sbmlContent)
{
try
{
var doc = libsbml.readSBMLFromString(sbmlContent);
var props = new ConversionProperties();
props.addOption("convert cobra", true, "");
if (doc.convert(props) != libsbml.LIBSBML_OPERATION_SUCCESS)
return;
InitializeFromSBMLDocument(doc);
}
catch
{
}
}
/**
* Returns the default properties of this converter.
*
* A given converter exposes one or more properties that can be adjusted
* in order to influence the behavior of the converter. This method
* returns the @em default property settings for this converter. It is
* meant to be called in order to discover all the settings for the
* converter object.
*
* @return the ConversionProperties object describing the default properties
* for this converter.
*/
public new ConversionProperties getDefaultProperties()
{
ConversionProperties ret = new ConversionProperties(libsbmlPINVOKE.SBMLInitialAssignmentConverter_getDefaultProperties(swigCPtr), true);
return ret;
}
ConversionProperties getDefaultProperties()
{
ConversionProperties ret = new ConversionProperties(libsbmlPINVOKE.SBMLFunctionDefinitionConverter_getDefaultProperties(swigCPtr), true);
return(ret);
}
internal static HandleRef getCPtr(ConversionProperties obj)
{
return (obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr;
}
SBMLConverter getConverterFor(ConversionProperties props)
{
SBMLConverter ret
= (SBMLConverter)libsbml.DowncastSBMLConverter(libsbmlPINVOKE.SBMLConverterRegistry_getConverterFor(swigCPtr, ConversionProperties.getCPtr(props)), false);
if (libsbmlPINVOKE.SWIGPendingException.Pending)
{
throw libsbmlPINVOKE.SWIGPendingException.Retrieve();
}
return(ret);
}
bool matchesProperties(ConversionProperties props)
{
bool ret = libsbmlPINVOKE.SBMLStripPackageConverter_matchesProperties(swigCPtr, ConversionProperties.getCPtr(props));
if (libsbmlPINVOKE.SWIGPendingException.Pending)
{
throw libsbmlPINVOKE.SWIGPendingException.Retrieve();
}
return(ret);
}
ConversionProperties getDefaultProperties()
{
ConversionProperties ret = new ConversionProperties(libsbmlPINVOKE.SBMLStripPackageConverter_getDefaultProperties(swigCPtr), true);
return(ret);
}
/**
* Returns @c true if this converter object's properties match the given
* properties.
*
* A typical use of this method involves creating a ConversionProperties
* object, setting the options desired, and then calling this method on
* an SBMLLevelVersionConverter object to find out if the object's
* property values match the given ones. This method is also used by
* SBMLConverterRegistry::getConverterFor(@if java ConversionProperties@endif)
* to search across all registered converters for one matching particular
* properties.
*
* @param props the properties to match.
*
* @return @c true if this converter's properties match, @c false
* otherwise.
*/
public new bool matchesProperties(ConversionProperties props)
{
bool ret = libsbmlPINVOKE.SBMLLevelVersionConverter_matchesProperties(swigCPtr, ConversionProperties.getCPtr(props));
if (libsbmlPINVOKE.SWIGPendingException.Pending) throw libsbmlPINVOKE.SWIGPendingException.Retrieve();
return ret;
}
ConversionProperties getDefaultProperties()
{
ConversionProperties ret = new ConversionProperties(libsbmlPINVOKE.SBMLLocalParameterConverter_getDefaultProperties(swigCPtr), true);
return(ret);
}
