public void test_Reaction_addReactant()
{
SpeciesReference sr = new SpeciesReference(2,4);
sr.setSpecies( "s");
R.addReactant(sr);
assertTrue( R.getNumReactants() == 1 );
assertTrue( R.getNumProducts() == 0 );
assertTrue( R.getNumModifiers() == 0 );
sr = null;
}
public void test_Reaction_addProduct1()
{
Reaction m = new Reaction(2,2);
SpeciesReference p = new SpeciesReference(2,2);
SpeciesReference p1 = new SpeciesReference(2,2);
p1.setSpecies( "k");
p1.setId( "k1");
int i = m.addProduct(p);
assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT );
p.setSpecies( "k");
p.setId( "k1");
i = m.addProduct(p);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( m.getNumProducts() == 1 );
i = m.addProduct(p1);
assertTrue( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID );
assertTrue( m.getNumProducts() == 1 );
p = null;
p1 = null;
m = null;
}
public void test_internal_consistency_check_99921()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
SpeciesReference sr = new SpeciesReference(2,4);
d.setLevelAndVersion(2,1,false);
Model m = d.createModel();
Compartment c = m.createCompartment();
c.setId("c");
Species s = m.createSpecies();
s.setId("s");
Reaction r = m.createReaction();
r.setId("r");
s.setCompartment("c");
sr.setSpecies("s");
sr.setName("mmm");
r.addReactant(sr);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_Reaction_getReactantById()
{
SpeciesReference sr1 = new SpeciesReference(2,4);
sr1.setSpecies( "R1");
SpeciesReference sr2 = new SpeciesReference(2,4);
sr2.setSpecies( "R2");
R.addReactant(sr1);
R.addReactant(sr2);
assertTrue( R.getNumReactants() == 2 );
assertTrue( R.getNumProducts() == 0 );
assertTrue( R.getNumModifiers() == 0 );
assertNotEquals(R.getReactant( "R1"),sr1);
assertNotEquals(R.getReactant( "R2"),sr2);
assertEquals(R.getReactant( "R3"),null);
sr1 = null;
sr2 = null;
}
public void test_Reaction_getReactant()
{
SpeciesReference sr1 = new SpeciesReference(2,4);
SpeciesReference sr2 = new SpeciesReference(2,4);
sr1.setSpecies( "R1");
sr2.setSpecies( "R2");
R.addReactant(sr1);
R.addReactant(sr2);
sr1 = null;
sr2 = null;
assertTrue( R.getNumReactants() == 2 );
assertTrue( R.getNumProducts() == 0 );
assertTrue( R.getNumModifiers() == 0 );
sr1 = R.getReactant(0);
sr2 = R.getReactant(1);
assertTrue(( "R1" == sr1.getSpecies() ));
assertTrue(( "R2" == sr2.getSpecies() ));
}
public void test_Reaction_addProduct3()
{
Reaction m = new Reaction(2,2);
SpeciesReference p = new SpeciesReference(1,2);
p.setSpecies( "k");
int i = m.addProduct(p);
assertTrue( i == libsbml.LIBSBML_LEVEL_MISMATCH );
assertTrue( m.getNumProducts() == 0 );
p = null;
m = null;
}
public void test_L3_SpeciesReference_hasRequiredAttributes()
{
SpeciesReference sr = new SpeciesReference(3,1);
assertEquals( false, sr.hasRequiredAttributes() );
sr.setSpecies( "id");
assertEquals( false, sr.hasRequiredAttributes() );
sr.setConstant(false);
assertEquals( true, sr.hasRequiredAttributes() );
sr = null;
}
public void test_Reaction_addReactant2()
{
Reaction m = new Reaction(2,2);
SpeciesReference p = new SpeciesReference(2,1);
p.setSpecies( "k");
int i = m.addReactant(p);
assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH );
assertTrue( m.getNumReactants() == 0 );
p = null;
m = null;
}
public void test_SpeciesReference_Reactant_parent_add()
{
SpeciesReference sr = new SpeciesReference(2,4);
Reaction r = new Reaction(2,4);
sr.setSpecies("s");
r.addReactant(sr);
sr = null;
ListOf lo = r.getListOfReactants();
assertTrue( lo == r.getReactant(0).getParentSBMLObject() );
assertTrue( r == lo.getParentSBMLObject() );
}
public void test_SpeciesReference()
{
SpeciesReference sr = new SpeciesReference(2,4);
assertEquals( false, (sr.hasRequiredAttributes()) );
sr.setSpecies("sr");
assertEquals( true, sr.hasRequiredAttributes() );
sr = null;
}
public void test_SpeciesReference_setSpecies3()
{
SpeciesReference c = new SpeciesReference(2,2);
int i = c.setSpecies( "mole");
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue(( "mole" == c.getSpecies() ));
assertEquals( true, c.isSetSpecies() );
c = null;
}
public void test_SpeciesReference_setSpecies2()
{
SpeciesReference c = new SpeciesReference(2,2);
int i = c.setSpecies( "1cell");
assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE );
assertEquals( false, c.isSetSpecies() );
c = null;
}
public void test_SpeciesReference_Reactant_ancestor_add()
{
SpeciesReference sr = new SpeciesReference(2,4);
Reaction r = new Reaction(2,4);
sr.setSpecies("s");
r.addReactant(sr);
sr = null;
ListOf lo = r.getListOfReactants();
SpeciesReference obj = r.getReactant(0);
assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r );
assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
}