public void test_Compartment() { Compartment c = new Compartment(2,4); assertEquals( false, (c.hasRequiredAttributes()) ); c.setId("c"); assertEquals( true, c.hasRequiredAttributes() ); c = null; }
public void test_Model_addCompartment2() { Model m = new Model(2,2); Compartment c = new Compartment(2,1); c.setId( "c"); int i = m.addCompartment(c); assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH ); assertTrue( m.getNumCompartments() == 0 ); c = null; m = null; }
public void test_Model_addCompartment1() { Model m = new Model(2,2); Compartment c = new Compartment(2,2); int i = m.addCompartment(c); assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ); c.setId( "c"); i = m.addCompartment(c); assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ); assertTrue( m.getNumCompartments() == 1 ); c = null; m = null; }
public void test_internal_consistency_check_99902() { SBMLDocument d = new SBMLDocument(2,4); long errors; Compartment c = new Compartment(2,4); d.setLevelAndVersion(1,2,false); Model m = d.createModel(); c.setCompartmentType("hh"); c.setId("c"); m.addCompartment(c); errors = d.checkInternalConsistency(); assertTrue( errors == 1 ); assertTrue( d.getError(0).getErrorId() == 10103 ); d = null; }
public void test_Compartment_assignmentOperator() { Compartment o1 = new Compartment(2,4); o1.setId("c"); o1.setOutside("c2"); assertTrue( o1.getId() == "c" ); assertTrue( o1.getOutside() == "c2" ); Compartment o2 = new Compartment(2,4); o2 = o1; assertTrue( o2.getId() == "c" ); assertTrue( o2.getOutside() == "c2" ); assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ); o2 = null; o1 = null; }
public void test_internal_consistency_check_99903() { SBMLDocument d = new SBMLDocument(2,4); long errors; Compartment c = new Compartment(2,4); d.setLevelAndVersion(1,2,false); Model m = d.createModel(); c.setConstant(true); c.setId("c"); m.addCompartment(c); Rule r = m.createAssignmentRule(); r.setVariable("c"); r.setFormula("2*3"); errors = d.checkInternalConsistency(); assertTrue( errors == 3 ); d = null; }
public void test_Model_addCompartment5() { Model m = new Model(2,2); Compartment c = new Compartment(2,2); c.setId( "c"); Compartment c1 = new Compartment(2,2); c1.setId( "c"); int i = m.addCompartment(c); assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ); assertTrue( m.getNumCompartments() == 1 ); i = m.addCompartment(c1); assertTrue( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ); assertTrue( m.getNumCompartments() == 1 ); c = null; c1 = null; m = null; }
public void test_L3_Compartment_hasRequiredAttributes() { Compartment c = new Compartment(3,1); assertEquals( false, c.hasRequiredAttributes() ); c.setId( "id"); assertEquals( false, c.hasRequiredAttributes() ); c.setConstant(false); assertEquals( true, c.hasRequiredAttributes() ); c = null; }
public void test_Compartment_setId4() { Compartment c = new Compartment(2,2); int i = c.setId(""); assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ); assertEquals( false, c.isSetId() ); c = null; }
public void test_Compartment_setId2() { Compartment c = new Compartment(2,2); int i = c.setId( "1cell"); assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ); assertEquals( false, c.isSetId() ); c = null; }
public void test_SBMLConvert_convertToL1_Species_Amount() { SBMLDocument d = new SBMLDocument(2,1); Model m = d.createModel(); string sid = "C"; Compartment c = new Compartment(2,4); Species s = new Species(2,4); c.setId(sid); m.addCompartment(c); s.setCompartment(sid); s.setInitialAmount(2.34); m.addSpecies(s); assertTrue( d.setLevelAndVersion(1,2,true) == true ); assertTrue( s.getInitialAmount() == 2.34 ); d = null; }
public void test_Compartment_copyConstructor() { Compartment o1 = new Compartment(2,4); o1.setId("c"); o1.setOutside("c2"); assertTrue( o1.getId() == "c" ); assertTrue( o1.getOutside() == "c2" ); Compartment o2 = new Compartment(o1); assertTrue( o2.getId() == "c" ); assertTrue( o2.getOutside() == "c2" ); assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ); o2 = null; o1 = null; }
public void test_Model_addCompartment() { Compartment c = new Compartment(2,4); c.setId( "c"); M.addCompartment(c); assertTrue( M.getNumCompartments() == 1 ); }
public void test_Model_getCompartmentById() { Compartment c1 = new Compartment(2,4); Compartment c2 = new Compartment(2,4); c1.setId( "A" ); c2.setId( "B" ); M.addCompartment(c1); M.addCompartment(c2); assertTrue( M.getNumCompartments() == 2 ); assertTrue( M.getCompartment( "A" ) != c1 ); assertTrue( M.getCompartment( "B" ) != c2 ); assertTrue( M.getCompartment( "C" ) == null ); }
public void test_Model_getCompartment() { Compartment c1 = new Compartment(2,4); Compartment c2 = new Compartment(2,4); c1.setId( "A"); c2.setId( "B"); M.addCompartment(c1); M.addCompartment(c2); assertTrue( M.getNumCompartments() == 2 ); c1 = M.getCompartment(0); c2 = M.getCompartment(1); assertTrue(( "A" == c1.getId() )); assertTrue(( "B" == c2.getId() )); }
public void test_Compartment_parent_add() { Compartment c = new Compartment(2,4); c.setId("c"); Model m = new Model(2,4); m.addCompartment(c); c = null; ListOf lo = m.getListOfCompartments(); assertTrue( lo == m.getCompartment(0).getParentSBMLObject() ); assertTrue( m == lo.getParentSBMLObject() ); }
public void test_SBMLConvert_convertToL1_Species_Concentration() { SBMLDocument d = new SBMLDocument(2,1); Model m = d.createModel(); string sid = "C"; Compartment c = new Compartment(2,1); Species s = new Species(2,1); c.setId(sid); c.setSize(1.2); m.addCompartment(c); s.setId( "s" ); s.setCompartment(sid); s.setInitialConcentration(2.34); m.addSpecies(s); assertTrue( d.setLevelAndVersion(1,2,true) == true ); Species s1 = m.getSpecies(0); assertTrue( s1 != null ); assertTrue(( "C" == s1.getCompartment() )); assertTrue( m.getCompartment( "C").getSize() == 1.2 ); assertTrue( s1.getInitialConcentration() == 2.34 ); assertTrue( s1.isSetInitialConcentration() == true ); d = null; }
public void test_Compartment_ancestor_add() { Compartment c = new Compartment(2,4); c.setId("C"); Model m = new Model(2,4); m.addCompartment(c); c = null; ListOf lo = m.getListOfCompartments(); Compartment obj = m.getCompartment(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); }