public static Core20Paired Deserialize(string fileName)
{
Stream stream = File.Open(fileName, FileMode.Open);
BinaryFormatter bformatter = new BinaryFormatter();
Core20Paired corePaired = (Core20Paired)bformatter.Deserialize(stream);
stream.Close();
return(corePaired);
}
private void xICCoreToolStripMenuItem_Click(object sender, EventArgs e)
{
openFileDialog1.Filter = "XIC files (*.xic)|*.xic";
if (openFileDialog1.ShowDialog() != System.Windows.Forms.DialogResult.Cancel)
{
coreP = new PairAnalyzer.Core20Paired(openFileDialog1.FileName, checkBoxInvertClasses.Checked);
FinishLoadingProcedures();
buttonRunAnalysis.Enabled = true;
MessageBox.Show("File loaded.");
}
checkBoxInvertClasses.Enabled = false;
}
private void pairedAnalysisToolStripMenuItem_Click(object sender, EventArgs e)
{
openFileDialog1.Filter = "Paired files (*.paired)|*.paired|All files(*.*)|*.*";
openFileDialog1.FileName = "";
if (openFileDialog1.ShowDialog() != DialogResult.Cancel)
{
buttonProteinReport.Enabled = true;
buttonRunAnalysis.Enabled = true;
coreP = Core20Paired.Deserialize(openFileDialog1.FileName);
PrintPeptideAnalysis(coreP.AcceptableClasses);
PrintProteinReport();
foreach (int theClass in coreP.core.myQuantPkgs.Select(a => a.ClassLabel).Distinct().ToList())
{
checkedListBoxClasses.Items.Add(theClass);
}
for (int i = 0; i < checkedListBoxClasses.Items.Count; i++)
{
if (coreP.AcceptableClasses.Contains(int.Parse(checkedListBoxClasses.Items[i].ToString())))
{
checkedListBoxClasses.SetItemCheckState(i, CheckState.Checked);
}
else
{
checkedListBoxClasses.SetItemCheckState(i, CheckState.Unchecked);
}
}
}
checkBoxInvertClasses.Checked = coreP.InvertClasses;
checkBoxNormalize.Checked = coreP.NormalizeTIC;
checkBoxOnlyUniquePeptides.Checked = coreP.OnlyUniquePeptides;
numericUpDownMinMS1COunt.Value = coreP.MinMS1Count;
numericUpDownMinPeptideFold.Value = (decimal)coreP.MinFold;
}