private void button4_Click(object sender, EventArgs e)
{
string sequencePath = textBoxSeqDir.Text;
DialogResult result;
result = MessageBox.Show("Press OK to delete all empty directories under " + sequencePath, "Confirm delete", MessageBoxButtons.OKCancel);
if (result == DialogResult.OK)
{
int numberOfDirs = DirCounter(sequencePath);
string[] dirListArray; //list of all directories in sequence
dirListArray = new string[numberOfDirs];
//initialise initalArray
for (int i = 0; i < dirListArray.Length; i++)
{
dirListArray[i] = "0";
}
//pass root directory to dirLister
directories dir = new directories();
dirListArray = dir.dirLister(sequencePath, 0, dirListArray);
//order dirListArray alphabetically (to correct for webfolders), then reverse it
Array.Sort(dirListArray);
Array.Reverse(dirListArray);
//pass reversed dirListArray to directoryDeleter
directoryDeleter dirDel = new directoryDeleter();
for (int p = 1; p < dirListArray.Length; p++)
{
dirDel.dirDeleter(dirListArray[p]);
}
}
}
//generates index.xml
private void button3_Click_1(object sender, EventArgs e)
{
string sequencePath = textBoxSeqDir.Text;
//path to save output index.xml file
string xmlIndexOutput = sequencePath + Path.DirectorySeparatorChar + "index.xml";
int sequencePathIndex = sequencePath.LastIndexOf(Path.DirectorySeparatorChar);
string sequence = sequencePath.Substring(sequencePathIndex + 1, 4);
//variables for handling multiple child elements where these are allowed in the DTD
//module 2
bool m2open = false;
bool m22open = false;
bool m23open = false;
bool m23popen = false;
bool m24open = false;
bool m25open = false;
bool m26open = false;
bool m27open = false;
//module 3
bool m3open = false;
bool m32open = false;
bool m32sopen = false;
bool m32s1open = false;
bool m32s11open = false;
bool m32s12open = false;
bool m32s13open = false;
bool m32s2open = false;
bool m32s21open = false;
bool m32s22open = false;
bool m32s23open = false;
bool m32s24open = false;
bool m32s25open = false;
bool m32s26open = false;
bool m32s3open = false;
bool m32s31open = false;
bool m32s32open = false;
bool m32s4open = false;
bool m32s41open = false;
bool m32s42open = false;
bool m32s43open = false;
bool m32s44open = false;
bool m32s45open = false;
bool m32s5open = false;
bool m32s6open = false;
bool m32s7open = false;
bool m32s71open = false;
bool m32s72open = false;
bool m32s73open = false;
bool m32popen = false;
bool m32p1open = false;
bool m32p2open = false;
bool m32p3open = false;
bool m32p35open = false;
bool m32p4open = false;
bool m32p5open = false;
bool m32p51open = false;
bool m32p52open = false;
bool m32p53open = false;
bool m32p54open = false;
bool m32p55open = false;
bool m32p56open = false;
bool m32p6open = false;
bool m32p7open = false;
bool m32p8open = false;
bool m32p81open = false;
bool m32p82open = false;
bool m32p83open = false;
bool m32aopen = false;
bool m32a1open = false;
bool m32a2open = false;
bool m32a3open = false;
bool m32ropen = false;
bool m33open = false;
string substance = "0"; //used for multiple 3.2.S
string substance1 = "0"; //used for multiple 3.2.S
string product = ""; //used for multiple 3.2.P
string product1 = ""; //used for multiple 3.2.P
string excipient = ""; //used for multiple 3.2.P.4
string excipient1 = ""; //used for multiple 3.2.P.4
int charindex; //used for multiple 3.2.S, 3.2.P, 3.2.P.4, also used for module 5.3.5
int startposition; //used for multiple 3.2.S, 3.2.P, 3.2.P.4, also used for module 5.3.5
int endposition; //used for multiple 3.2.S, 3.2.P, 3.2.P.4, also used for module 5.3.5
string api = ""; //used to assign "substance" attribute in 3.2.S
int apiIndex = 0; //used to assign "substance" attribute in 3.2.S
string manufacturer = ""; //used to assign "manufacturer" attribute in 3.2.S
int manufacturerIndex = 0; //used to assign "manufacturer" attribute in 3.2.S
//module 4
bool m4open = false;
bool m42open = false;
bool m421open = false;
bool m4211open = false;
bool m4212open = false;
bool m4213open = false;
bool m4214open = false;
bool m422open = false;
bool m4221open = false;
bool m4222open = false;
bool m4223open = false;
bool m4224open = false;
bool m4225open = false;
bool m4226open = false;
bool m4227open = false;
bool m423open = false;
bool m4231open = false;
bool m4232open = false;
bool m4233open = false;
bool m42331open = false;
bool m42332open = false;
bool m4234open = false;
bool m42341open = false;
bool m42342open = false;
bool m42343open = false;
bool m4235open = false;
bool m42351open = false;
bool m42352open = false;
bool m42353open = false;
bool m42354open = false;
bool m4236open = false;
bool m4237open = false;
bool m42371open = false;
bool m42372open = false;
bool m42373open = false;
bool m42374open = false;
bool m42375open = false;
bool m42376open = false;
bool m42377open = false;
bool m43open = false;
//module 5
bool m5open = false;
bool m52open = false;
bool m53open = false;
bool m531open = false;
bool m5311open = false;
bool m5312open = false;
bool m5313open = false;
bool m5314open = false;
bool m532open = false;
bool m5321open = false;
bool m5322open = false;
bool m5323open = false;
bool m533open = false;
bool m5331open = false;
bool m5332open = false;
bool m5333open = false;
bool m5334open = false;
bool m5335open = false;
bool m534open = false;
bool m5341open = false;
bool m5342open = false;
bool m535open = false;
bool m5351open = false;
bool m5352open = false;
bool m5353open = false;
bool m5354open = false;
bool m536open = false;
bool m537open = false;
bool m54open = false;
string indication = "";
string indication1 = "";
//integer counter for id values
int idcounter = 0;
//count files in sequence to determine max. number of unindexed files
int totalFileNumber = FileCounter(sequencePath);
//count directories in sequence to determine array size for dirListArray
int arraySize = DirCounter(sequencePath);
//system to list unindexed files
bool indexed = false;
string[] unIndexed; //array of unindexed files
unIndexed = new string[totalFileNumber];
//unindexed counter
int n = 0;
//initialise unIndexed Array
for (int i = 0; i < unIndexed.Length; i++)
{
unIndexed[i] = "";
}
string[] dirListArray; //array receiving from dirLister
dirListArray = new string[arraySize];
//initialise dirListArray
for (int i = 0; i < dirListArray.Length; i++)
{
dirListArray[i] = "0";
}
//pass root directory to dirLister
directories dir = new directories();
dirListArray = dir.dirLister(sequencePath, 0, dirListArray);
//create a filename array for sorting - workaround for sorting multidimensional array filenameListArray
//populate this array with all filenames in sequence, except any files directly under sequence directory (i.e. not files on same level as m1, m2... directories)
//filenameListArray holds filenames, relative path to files, md5s, operation attributes and modified file id information
string[] filenameSortArray;
filenameSortArray = new string[totalFileNumber];
int counterY = 0;
for (int q = 1; q < dirListArray.Length; q++)
{
DirectoryInfo allDirs = new DirectoryInfo(dirListArray[q]);
foreach (FileInfo f in allDirs.GetFiles())
{
filenameSortArray[counterY] = f.FullName;
counterY++;
}
}
Array.Sort(filenameSortArray);
string[,] filenameListArray;
filenameListArray = new string[totalFileNumber, 5];
int counterX = 0;
for (int p = 0; p < totalFileNumber; p++)
{
FileInfo f = new FileInfo(filenameSortArray[p]);
string name = f.FullName;
int index = name.IndexOf(sequence);
string shortname = name.Substring(index + 5);
shortname = shortname.Replace("\\", "/");
MD5Calculator checksum = new MD5Calculator();
string sum = checksum.ComputeMD5Checksum(f.FullName);
string modifiedFileID = "";
string operation = "new";
//Lifecycle operations, replace, append and delete
if (name.Contains("replace("))
{
string prevSequence = sequencePath.Substring(0, sequencePath.Length - 4) + name.Substring(name.IndexOf("(") + 1, 4) + Path.DirectorySeparatorChar + "index.xml";
string prevLeafPath = shortname.Substring(0, shortname.IndexOf("replace")) + shortname.Substring(shortname.IndexOf(")") + 1, shortname.Length - (shortname.IndexOf(")") + 1));
XMLsort repDelID = new XMLsort();
modifiedFileID = "../" + name.Substring(name.IndexOf("(") + 1, 4) + "/index.xml#" + repDelID.modifiedFile(prevSequence, prevLeafPath);
operation = "replace";
//rename file to remove the replace pointer
string newFileName = f.FullName.Substring(0, f.FullName.IndexOf("replace")) + f.FullName.Substring(f.FullName.IndexOf(")")+1, f.FullName.Length - (f.FullName.IndexOf(")")+1));
File.Move(f.FullName, newFileName);
name = newFileName;
index = name.IndexOf(sequence);
shortname = name.Substring(index + 5);
shortname = shortname.Replace("\\", "/");
}
if (name.Contains("append("))
{
string prevSequence = sequencePath.Substring(0, sequencePath.Length - 4) + name.Substring(name.IndexOf("(") + 1, 4) + Path.DirectorySeparatorChar + "index.xml";
string prevLeafPath = shortname.Substring(0, shortname.IndexOf("append")) + shortname.Substring(shortname.IndexOf(")") + 1, shortname.Length - (shortname.IndexOf(")") + 1));
XMLsort repDelID = new XMLsort();
modifiedFileID = "../" + name.Substring(name.IndexOf("(") + 1, 4) + "/index.xml#" + repDelID.modifiedFile(prevSequence, prevLeafPath);
operation = "append";
//rename file to remove the replace pointer
string newFileName = f.FullName.Substring(0, f.FullName.IndexOf("append")) + f.FullName.Substring(f.FullName.IndexOf(")")+1, f.FullName.Length - (f.FullName.IndexOf(")")+1));
File.Move(f.FullName, newFileName);
name = newFileName;
index = name.IndexOf(sequence);
shortname = name.Substring(index + 5);
shortname = shortname.Replace("\\", "/");
}
if (name.Contains("delete("))
{
string prevSequence = sequencePath.Substring(0, sequencePath.Length - 4) + name.Substring(name.IndexOf("(") + 1, 4) + Path.DirectorySeparatorChar + "index.xml";
string prevLeafPath = shortname.Substring(0, shortname.IndexOf("delete")) + shortname.Substring(shortname.IndexOf(")") + 1, shortname.Length - (shortname.IndexOf(")") + 1));
XMLsort repDelID = new XMLsort();
//string newFileName = f.FullName.Substring(0, f.FullName.IndexOf("delete")) + f.FullName.Substring(f.FullName.IndexOf(")") + 1, f.FullName.Length - (f.FullName.IndexOf(")") + 1));
//name = newFileName;
modifiedFileID = "../" + name.Substring(name.IndexOf("(") + 1, 4) + "/index.xml#" + repDelID.modifiedFile(prevSequence, prevLeafPath);
operation = "delete";
shortname = "";
sum = "";
File.Delete(f.FullName);
}
filenameListArray[counterX, 0] = name;
filenameListArray[counterX, 1] = shortname;
filenameListArray[counterX, 2] = sum;
filenameListArray[counterX, 3] = operation;
filenameListArray[counterX, 4] = modifiedFileID;
counterX++;
}
try
{
StreamWriter swr = File.CreateText(xmlIndexOutput);
DateTime dt = DateTime.Now;
//start of XML file - index.xml
swr.WriteLine("<?xml version=\"1.0\" encoding=\"UTF-8\"?>");
swr.WriteLine("<!DOCTYPE ectd:ectd SYSTEM \"util/dtd/ich-ectd-3-2.dtd\">");
swr.WriteLine("<?xml-stylesheet type=\"text/xsl\" href=\"util/style/ectd-2-0.xsl\"?>");
swr.WriteLine("<!-- Generated {0} using eCTD indexer - http://ectd.is -->", dt.ToString());
swr.WriteLine("<ectd:ectd dtd-version=\"3.2\" xml:lang=\"en\" xmlns:ectd=\"http://www.ich.org/ectd\" xmlns:xlink=\"http://www.w3c.org/1999/xlink\">");
//leaf generator
for (int p = 0; p < totalFileNumber; p++)
{
//Module 1
if (filenameListArray[p,0].Contains("eu-regional.xml"))
{
swr.WriteLine(" <m1-administrative-information-and-prescribing-information>");
swr.WriteLine(" <leaf ID=\"m1-{0}\" operation=\"new\" checksum-type=\"md5\"", idcounter);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);;
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>EU Regional Module 1</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m1-administrative-information-and-prescribing-information>");
indexed = true;
}
//Module 2
if (filenameListArray[p, 0].Contains("m2" + Path.DirectorySeparatorChar) && m2open == false)
{
swr.WriteLine(" <m2-common-technical-document-summaries>");
m2open = true;
}
if (filenameListArray[p, 0].Contains("m2" + Path.DirectorySeparatorChar) && filenameListArray[p, 0].Contains("m2"+Path.DirectorySeparatorChar+"2") == false)
{
swr.WriteLine(" <leaf ID=\"m2-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);;
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>Cover Letter</title>");
swr.WriteLine(" </leaf>");
idcounter++;
indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar + "22-intro") && m22open == false)
{
swr.WriteLine(" <m2-2-introduction>");
m22open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar + "22-intro"))
{
swr.WriteLine(" <leaf ID=\"m22-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>Introduction</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar + "22-intro") == false && m22open == true)
{
swr.WriteLine(" </m2-2-introduction>");
m22open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar + "23-qos") && m23open == false)
{
swr.WriteLine(" <m2-3-quality-overall-summary>");
m23open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar + "23-qos")
&& filenameListArray[p,0].Contains("introduction") == false
&& filenameListArray[p,0].Contains("drug-substance") == false
&& filenameListArray[p,0].Contains("drug-product") == false
&& filenameListArray[p,0].Contains("appendices") == false
&& filenameListArray[p,0].Contains("regional-information") == false)
{
swr.WriteLine(" <leaf ID=\"m23-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>Quality Overall Summary</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar + "23-qos") && filenameListArray[p,0].Contains("appendices"))
{
swr.WriteLine(" <m2-3-a-appendices>");
swr.WriteLine(" <leaf ID=\"m23a-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>Appendices</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m2-3-a-appendices>");
idcounter++; indexed = true;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar + "23-qos" + Path.DirectorySeparatorChar + "drug-product") && m23popen == false)
{
swr.WriteLine(" <m2-3-p-drug-product>");
m23popen = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar + "23-qos" + Path.DirectorySeparatorChar + "drug-product"))
{
swr.WriteLine(" <leaf ID=\"m23p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>Drug Product</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar + "23-qos" + Path.DirectorySeparatorChar + "drug-product") == false && m23popen == true)
{
swr.WriteLine(" </m2-3-p-drug-product>");
m23popen = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar + "23-qos" + Path.DirectorySeparatorChar + "drug-substance"))
{
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar + "23-qos" + Path.DirectorySeparatorChar + "drug-substance.pdf") == false && filenameListArray[p, 0].Contains("-manufacturer-"))
{
apiIndex = filenameListArray[p, 0].IndexOf(Path.DirectorySeparatorChar + "23-qos" + Path.DirectorySeparatorChar + "drug-substance-");
manufacturerIndex = filenameListArray[p, 0].IndexOf("-manufacturer-");
api = filenameListArray[p, 0].Substring(apiIndex + 23, (manufacturerIndex - (apiIndex + 23)));
manufacturer = filenameListArray[p, 0].Substring(manufacturerIndex + 14, filenameListArray[p, 0].Length - (manufacturerIndex + 14 + 4));
}
else
{
api = "";
manufacturer = "";
}
swr.WriteLine(" <m2-3-s-drug-substance substance=\"{0}\" manufacturer=\"{1}\">", api, manufacturer);
swr.WriteLine(" <leaf ID=\"m23s-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>Drug Substance</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m2-3-s-drug-substance>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar + "23-qos") && filenameListArray[p,0].Contains("introduction"))
{
swr.WriteLine(" <m2-3-introduction>");
swr.WriteLine(" <leaf ID=\"m23i-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>Introduction</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m2-3-introduction>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar + "23-qos") && filenameListArray[p,0].Contains("regional-information"))
{
swr.WriteLine(" <m2-3-r-regional-information>");
swr.WriteLine(" <leaf ID=\"m23r-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>Regional information</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m2-3-r-regional-information>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar + "23-qos") == false && m23open == true)
{
swr.WriteLine(" </m2-3-quality-overall-summary>");
m23open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar + "24-nonclin-over") && m24open == false)
{
swr.WriteLine(" <m2-4-nonclinical-overview>");
m24open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar + "24-nonclin-over"))
{
swr.WriteLine(" <leaf ID=\"m24-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>2.4 Nonclinical Overview</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar + "24-nonclin-over") == false && m24open == true)
{
swr.WriteLine(" </m2-4-nonclinical-overview>");
m24open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar + "25-clin-over") && m25open == false)
{
swr.WriteLine(" <m2-5-clinical-overview>");
m25open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar + "25-clin-over"))
{
swr.WriteLine(" <leaf ID=\"m25-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>2.5 Clinical Overview</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar + "25-clin-over") == false && m25open == true)
{
swr.WriteLine(" </m2-5-clinical-overview>");
m25open = false;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar + "26-nonclin-sum") == true && m26open == false)
{
swr.WriteLine(" <m2-6-nonclinical-written-and-tabulated-summaries>");
m26open = true;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar + "26-nonclin-sum") == true
&& filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"26-nonclin-sum" + Path.DirectorySeparatorChar + "introduction") == false
&& filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"26-nonclin-sum" + Path.DirectorySeparatorChar + "pharmacol-written-summary") == false
&& filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"26-nonclin-sum" + Path.DirectorySeparatorChar + "pharmacol-tabulated-summary") == false
&& filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"26-nonclin-sum" + Path.DirectorySeparatorChar + "pharmkin-written-summary") == false
&& filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"26-nonclin-sum" + Path.DirectorySeparatorChar + "pharmkin-tabulated-summary") == false
&& filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"26-nonclin-sum" + Path.DirectorySeparatorChar + "toxicology-written-summary") == false
&& filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"26-nonclin-sum" + Path.DirectorySeparatorChar + "toxicology-tabulated-summary") == false)
{
swr.WriteLine(" <leaf ID=\"m26-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p, 3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p, 2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p, 4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p, 1]);
swr.WriteLine(" <title>2.6 Nonclinical Written and Tabulated Summaries</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"26-nonclin-sum" + Path.DirectorySeparatorChar + "introduction") == true)
{
swr.WriteLine(" <m2-6-1-introduction>");
swr.WriteLine(" <leaf ID=\"m26-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p, 3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p, 2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p, 4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p, 1]);
swr.WriteLine(" <title>2.6.1 Introduction</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m2-6-1-introduction>");
idcounter++; indexed = true;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"26-nonclin-sum" + Path.DirectorySeparatorChar + "pharmacol-written-summary") == true)
{
swr.WriteLine(" <m2-6-2-pharmacology-written-summary>");
swr.WriteLine(" <leaf ID=\"m26-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p, 3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p, 2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p, 4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p, 1]);
swr.WriteLine(" <title>2.6.2 Pharmacology Written Summary</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m2-6-2-pharmacology-written-summary>");
idcounter++; indexed = true;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"26-nonclin-sum" + Path.DirectorySeparatorChar + "pharmacol-tabulated-summary") == true)
{
swr.WriteLine(" <m2-6-3-pharmacology-tabulated-summary>");
swr.WriteLine(" <leaf ID=\"m26-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p, 3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p, 2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p, 4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p, 1]);
swr.WriteLine(" <title>2.6.3 Pharmacology Tabulated Summary</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m2-6-3-pharmacology-tabulated-summary>");
idcounter++; indexed = true;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"26-nonclin-sum" + Path.DirectorySeparatorChar + "pharmkin-written-summary") == true)
{
swr.WriteLine(" <m2-6-4-pharmacokinetics-written-summary>");
swr.WriteLine(" <leaf ID=\"m26-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p, 3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p, 2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p, 4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p, 1]);
swr.WriteLine(" <title>2.6.4 Pharmacokinetics Written Summary</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m2-6-4-pharmacokinetics-written-summary>");
idcounter++; indexed = true;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"26-nonclin-sum" + Path.DirectorySeparatorChar + "pharmkin-tabulated-summary") == true)
{
swr.WriteLine(" <m2-6-5-pharmacokinetics-tabulated-summary>");
swr.WriteLine(" <leaf ID=\"m26-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p, 3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p, 2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p, 4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p, 1]);
swr.WriteLine(" <title>2.6.5 Pharmacokinetics Tabulated Summary</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m2-6-5-pharmacokinetics-tabulated-summary>");
idcounter++; indexed = true;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"26-nonclin-sum" + Path.DirectorySeparatorChar + "toxicology-written-summary") == true)
{
swr.WriteLine(" <m2-6-6-toxicology-written-summary>");
swr.WriteLine(" <leaf ID=\"m26-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p, 3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p, 2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p, 4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p, 1]);
swr.WriteLine(" <title>2.6.6 Toxicology Written Summary</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m2-6-6-toxicology-written-summary>");
idcounter++; indexed = true;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"26-nonclin-sum" + Path.DirectorySeparatorChar + "toxicology-tabulated-summary") == true)
{
swr.WriteLine(" <m2-6-7-toxicology-tabulated-summary>");
swr.WriteLine(" <leaf ID=\"m26-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p, 3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p, 2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p, 4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p, 1]);
swr.WriteLine(" <title>2.6.7 Toxicology Tabulated Summary</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m2-6-7-toxicology-tabulated-summary>");
idcounter++; indexed = true;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"26-nonclin-sum") == false && m26open == true)
{
swr.WriteLine(" </m2-6-nonclinical-written-and-tabulated-summaries>");
m26open = false;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"27-clin-sum") == true && m27open == false)
{
swr.WriteLine(" <m2-7-clinical-summary>");
m27open = true;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"27-clin-sum") == true
&& filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"27-clin-sum" + Path.DirectorySeparatorChar + "summary-biopharm") == false
&& filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"27-clin-sum" + Path.DirectorySeparatorChar + "summary-clin-pharm") == false
&& filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"27-clin-sum" + Path.DirectorySeparatorChar + "summary-clin-efficacy") == false
&& filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"27-clin-sum" + Path.DirectorySeparatorChar + "summary-clin-safety") == false
&& filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"27-clin-sum" + Path.DirectorySeparatorChar + "literature-references") == false
&& filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"27-clin-sum" + Path.DirectorySeparatorChar + "synopses-indiv-studies") == false)
{
swr.WriteLine(" <leaf ID=\"m27-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p, 3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p, 2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p, 4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p, 1]);
swr.WriteLine(" <title>2.7 Clinical Summary</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"27-clin-sum" + Path.DirectorySeparatorChar + "summary-biopharm") == true)
{
swr.WriteLine(" <m2-7-1-summary-of-biopharmaceutic-studies-and-associated-analytical-methods>");
swr.WriteLine(" <leaf ID=\"m27-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p, 3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p, 2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p, 4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p, 1]);
swr.WriteLine(" <title>2.7.1 Summary of Biopharmaceutic Studies and Associated Analytical Methods</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m2-7-1-summary-of-biopharmaceutic-studies-and-associated-analytical-methods>");
idcounter++; indexed = true;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"27-clin-sum" + Path.DirectorySeparatorChar + "summary-clin-pharm") == true)
{
swr.WriteLine(" <m2-7-2-summary-of-clinical-pharmacology-studies>");
swr.WriteLine(" <leaf ID=\"m27-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p, 3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p, 2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p, 4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p, 1]);
swr.WriteLine(" <title>2.7.2 Summary of Clinical Pharmacology Studies</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m2-7-2-summary-of-clinical-pharmacology-studies>");
idcounter++; indexed = true;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"27-clin-sum" + Path.DirectorySeparatorChar + "summary-clin-efficacy") == true)
{
indication = filenameListArray[p, 0].Substring((filenameListArray[p, 0].IndexOf(Path.DirectorySeparatorChar+"summary-clin-efficacy-") + 23), (filenameListArray[p, 0].IndexOf(".") - (filenameListArray[p, 0].IndexOf(Path.DirectorySeparatorChar+"summary-clin-efficacy-") + 23)));
swr.WriteLine(" <m2-7-3-summary-of-clinical-efficacy indication=\"{0}\">", indication);
swr.WriteLine(" <leaf ID=\"m27-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p, 3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p, 2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p, 4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p, 1]);
swr.WriteLine(" <title>2.7.3 Summary of Clinical Efficacy - {0}</title>", indication);
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m2-7-3-summary-of-clinical-efficacy>");
indication = "";
idcounter++; indexed = true;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"27-clin-sum" + Path.DirectorySeparatorChar + "summary-clin-safety") == true)
{
swr.WriteLine(" <m2-7-4-summary-of-clinical-safety>");
swr.WriteLine(" <leaf ID=\"m27-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p, 3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p, 2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p, 4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p, 1]);
swr.WriteLine(" <title>2.7.4 Summary of Clinical Safety</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m2-7-4-summary-of-clinical-safety>");
idcounter++; indexed = true;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"27-clin-sum" + Path.DirectorySeparatorChar + "literature-references") == true)
{
swr.WriteLine(" <m2-7-5-literature-references>");
swr.WriteLine(" <leaf ID=\"m27-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p, 3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p, 2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p, 4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p, 1]);
swr.WriteLine(" <title>2.7.5 Literature References</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m2-7-5-literature-references>");
idcounter++; indexed = true;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"27-clin-sum" + Path.DirectorySeparatorChar + "synopses-indiv-studies") == true)
{
swr.WriteLine(" <m2-7-6-synopses-of-individual-studies>");
swr.WriteLine(" <leaf ID=\"m27-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p, 3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p, 2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p, 4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p, 1]);
swr.WriteLine(" <title>2.7.6 Synopses of Individual Studies</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m2-7-6-synopses-of-individual-studies>");
idcounter++; indexed = true;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"27-clin-sum") == false && m27open == true)
{
swr.WriteLine(" </m2-7-clinical-summary>");
m27open = false;
}
if (filenameListArray[p, 0].Contains("m2" + Path.DirectorySeparatorChar) == false && m2open == true)
{
swr.WriteLine(" </m2-common-technical-document-summaries>");
m2open = false;
idcounter = 0;
}
//Module 3
if (filenameListArray[p, 0].Contains("m3" + Path.DirectorySeparatorChar) == true && m3open == false)
{
swr.WriteLine(" <m3-quality>");
m3open = true;
}
if (filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "32-body-data") == true && m32open == false)
{
swr.WriteLine(" <m3-2-body-of-data>");
m32open = true;
}
if (filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "32-body-data" + Path.DirectorySeparatorChar + "32a-app") == true && m32aopen == false)
{
swr.WriteLine(" <m3-2-a-appendices>");
m32aopen = true;
}
if (filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "32-body-data" + Path.DirectorySeparatorChar + "32a-app") == true
&& filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "32-body-data" + Path.DirectorySeparatorChar + "32a-app" + Path.DirectorySeparatorChar + "32a1-fac-equip") == false
&& filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "32-body-data" + Path.DirectorySeparatorChar + "32a-app" + Path.DirectorySeparatorChar + "32a2-advent-agent") == false
&& filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "32-body-data" + Path.DirectorySeparatorChar + "32a-app" + Path.DirectorySeparatorChar + "32a3-excip") == false)
{
swr.WriteLine(" <leaf ID=\"m32a-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.A Appendices</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "32-body-data" + Path.DirectorySeparatorChar + "32a-app" + Path.DirectorySeparatorChar + "32a1-fac-equip") == true && m32a1open == false)
{
swr.WriteLine(" <m3-2-a-1-facilities-and-equipment>");
m32a1open = true;
}
if (filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "32-body-data" + Path.DirectorySeparatorChar + "32a-app" + Path.DirectorySeparatorChar + "32a1-fac-equip") == true)
{
swr.WriteLine(" <leaf ID=\"m32a-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.A.1 Facilities and Equipment</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "32-body-data" + Path.DirectorySeparatorChar + "32a-app" + Path.DirectorySeparatorChar + "32a1-fac-equip") == false && m32a1open == true)
{
swr.WriteLine(" </m3-2-a-1-facilities-and-equipment>");
m32a1open = false;
}
if (filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "32-body-data" + Path.DirectorySeparatorChar + "32a-app" + Path.DirectorySeparatorChar + "32a2-advent-agent") == true && m32a2open == false)
{
swr.WriteLine(" <m3-2-a-2-adventitious-agents-safety-evaluation>");
m32a2open = true;
}
if (filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "32-body-data" + Path.DirectorySeparatorChar + "32a-app" + Path.DirectorySeparatorChar + "32a2-advent-agent") == true)
{
swr.WriteLine(" <leaf ID=\"m32a-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.A.2 Adventitious Agents Safety Evaluation</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "32-body-data" + Path.DirectorySeparatorChar + "32a-app" + Path.DirectorySeparatorChar + "32a2-advent-agent") == false && m32a2open == true)
{
swr.WriteLine(" </m3-2-a-2-adventitious-agents-safety-evaluation>");
m32a2open = false;
}
if (filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "32-body-data" + Path.DirectorySeparatorChar + "32a-app" + Path.DirectorySeparatorChar + "32a3-excip") == true && m32a3open == false)
{
swr.WriteLine(" <m3-2-a-3-excipients>");
m32a3open = true;
}
if (filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "32-body-data" + Path.DirectorySeparatorChar + "32a-app" + Path.DirectorySeparatorChar + "32a3-excip"))
{
swr.WriteLine(" <leaf ID=\"m32a-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.A.3 Excipients</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "32-body-data" + Path.DirectorySeparatorChar + "32a-app" + Path.DirectorySeparatorChar + "32a3-excip") == false && m32a3open == true)
{
swr.WriteLine(" </m3-2-a-3-excipients>");
m32a3open = false;
}
if (filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "32-body-data" + Path.DirectorySeparatorChar + "32a-app") == false && m32aopen == true)
{
swr.WriteLine(" </m3-2-a-appendices>");
m32aopen = false;
}
if (filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "32-body-data" + Path.DirectorySeparatorChar + "32p-drug-prod") && m32popen == false)
{
charindex = filenameListArray[p,0].IndexOf(Path.DirectorySeparatorChar+"32p-drug-prod");
startposition = charindex + 15;
endposition = filenameListArray[p,0].Length - startposition;
product = filenameListArray[p,0].Substring(startposition, endposition);
charindex = product.IndexOf(Path.DirectorySeparatorChar);
product = product.Substring(0, charindex);
swr.WriteLine(" <m3-2-p-drug-product product-name=\"{0}\">", product);
m32popen = true;
idcounter = 0;
}
if (filenameListArray[p, 0].Contains("m3" + Path.DirectorySeparatorChar + "32-body-data" + Path.DirectorySeparatorChar + "32p-drug-prod") && m32popen == true)
{
charindex = filenameListArray[p, 0].IndexOf(Path.DirectorySeparatorChar+"32p-drug-prod");
startposition = charindex + 15;
endposition = filenameListArray[p, 0].Length - startposition;
product1 = filenameListArray[p, 0].Substring(startposition, endposition);
charindex = product1.IndexOf(Path.DirectorySeparatorChar);
product1 = product1.Substring(0, charindex);
if (string.Equals(product, product1) == false)
{
if (m32p1open)
{
swr.WriteLine(" </m3-2-p-1-description-and-composition-of-the-drug-product>");
m32p1open = false;
}
if (m32p2open)
{
swr.WriteLine(" </m3-2-p-2-pharmaceutical-development>");
m32p2open = false;
}
if (m32p35open)
{
swr.WriteLine(" </m3-2-p-3-5-process-validation-and-or-evaluation>");
m32p35open = false;
}
if (m32p3open)
{
swr.WriteLine(" </m3-2-p-3-manufacture>");
m32p3open = false;
}
if (m32p4open)
{
swr.WriteLine(" </m3-2-p-4-control-of-excipients>");
m32p4open = false;
}
if (m32p51open)
{
swr.WriteLine(" </m3-2-p-5-1-specifications>");
m32p51open = false;
}
if (m32p52open)
{
swr.WriteLine(" </m3-2-p-5-2-analytical-procedures>");
m32p52open = false;
}
if (m32p53open)
{
swr.WriteLine(" </m3-2-p-5-3-validation-of-analytical-procedures>");
m32p53open = false;
}
if (m32p54open)
{
swr.WriteLine(" </m3-2-p-5-4-batch-analyses>");
m32p54open = false;
}
if (m32p55open)
{
swr.WriteLine(" </m3-2-p-5-5-characterisation-of-impurities>");
m32p55open = false;
}
if (m32p56open)
{
swr.WriteLine(" </m3-2-p-5-6-justification-of-specifications>");
m32p56open = false;
}
if (m32p5open)
{
swr.WriteLine(" </m3-2-p-5-control-of-drug-product>");
m32p5open = false;
}
if (m32p6open)
{
swr.WriteLine(" </m3-2-p-6-reference-standards-or-materials>");
m32p6open = false;
}
if (m32p7open)
{
swr.WriteLine(" </m3-2-p-7-container-closure-system>");
m32p7open = false;
}
if (m32p82open)
{
swr.WriteLine(" </m3-2-p-8-2-post-approval-stability-protocol-and-stability-commitment>");
m32p82open = false;
}
if (m32p83open)
{
swr.WriteLine(" </m3-2-p-8-3-stability-data>");
m32p83open = false;
}
if (m32p81open)
{
swr.WriteLine(" </m3-2-p-8-1-stability-summary-and-conclusion>");
m32p81open = false;
}
if (m32p8open)
{
swr.WriteLine(" </m3-2-p-8-stability>");
m32p8open = false;
}
swr.WriteLine(" </m3-2-p-drug-product>");
swr.WriteLine(" <m3-2-p-drug-product product-name=\"{0}\">", product1);
product = product1;
}
}
if (filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "32-body-data" + Path.DirectorySeparatorChar + "32p-drug-prod")
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p1-desc-comp") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p2-pharm-dev") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p3-manuf") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p4-contr-excip") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p6-ref-stand") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p7-cont-closure-sys") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p8-stab") == false)
{
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P Drug Product</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p1-desc-comp") && m32p1open == false)
{
swr.WriteLine(" <m3-2-p-1-description-and-composition-of-the-drug-product>");
m32p1open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p1-desc-comp"))
{
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.1 Description and Composition of the Drug Product</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p1-desc-comp") == false && m32p1open == true)
{
swr.WriteLine(" </m3-2-p-1-description-and-composition-of-the-drug-product>");
m32p1open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p2-pharm-dev") && m32p2open == false)
{
swr.WriteLine(" <m3-2-p-2-pharmaceutical-development>");
m32p2open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p2-pharm-dev"))
{
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.2 Pharmaceutical Development</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p2-pharm-dev") == false && m32p2open == true)
{
swr.WriteLine(" </m3-2-p-2-pharmaceutical-development>");
m32p2open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p3-manuf") && m32p3open == false)
{
swr.WriteLine(" <m3-2-p-3-manufacture>");
m32p3open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p3-manuf")
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"manufacturers") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"batch-formula") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"manuf-process-and-controls") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"control-critical-steps") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"process-validation") == false)
{
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.3 Manufacture</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p3-manuf" + Path.DirectorySeparatorChar + "manufacturers"))
{
swr.WriteLine(" <m3-2-p-3-1-manufacturers>");
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.3.1 Manufacturer(s)</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m3-2-p-3-1-manufacturers>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p3-manuf" + Path.DirectorySeparatorChar + "batch-formula"))
{
swr.WriteLine(" <m3-2-p-3-2-batch-formula>");
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.3.2 Batch Formula</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m3-2-p-3-2-batch-formula>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p3-manuf" + Path.DirectorySeparatorChar + "manuf-process-and-controls"))
{
swr.WriteLine(" <m3-2-p-3-3-description-of-manufacturing-process-and-process-controls>");
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.3.3 Description of Manufacturing Process and Process Controls</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m3-2-p-3-3-description-of-manufacturing-process-and-process-controls>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p3-manuf" + Path.DirectorySeparatorChar + "control-critical-steps"))
{
swr.WriteLine(" <m3-2-p-3-4-controls-of-critical-steps-and-intermediates>");
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.3.4 Controls of Critical Steps and Intermediates</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m3-2-p-3-4-controls-of-critical-steps-and-intermediates>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p3-manuf" + Path.DirectorySeparatorChar + "process-validation") && m32p35open == false)
{
swr.WriteLine(" <m3-2-p-3-5-process-validation-and-or-evaluation>");
m32p35open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p3-manuf" + Path.DirectorySeparatorChar + "process-validation"))
{
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.3.5 Process Validation and/or Evaluation</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p3-manuf" + Path.DirectorySeparatorChar + "process-validation") == false && m32p35open == true)
{
swr.WriteLine(" </m3-2-p-3-5-process-validation-and-or-evaluation>");
m32p35open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p3-manuf") == false && m32p3open == true)
{
swr.WriteLine(" </m3-2-p-3-manufacture>");
m32p3open = false;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar + "32p4-contr-excip" + Path.DirectorySeparatorChar) && m32p4open == false)
{
charindex = filenameListArray[p,0].IndexOf(Path.DirectorySeparatorChar+"32p4-contr-excip");
startposition = charindex + 18;
endposition = filenameListArray[p,0].Length - startposition;
excipient = filenameListArray[p,0].Substring(startposition, endposition);
charindex = excipient.IndexOf(Path.DirectorySeparatorChar);
if (charindex > 0)
{
excipient = excipient.Substring(0, charindex);
}
else excipient = "";
swr.WriteLine(" <m3-2-p-4-control-of-excipients excipient=\"{0}\">", excipient);
m32p4open = true;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar + "32p4-contr-excip" + Path.DirectorySeparatorChar) && m32p4open == true)
{
charindex = filenameListArray[p,0].IndexOf(Path.DirectorySeparatorChar+"32p4-contr-excip");
startposition = charindex + 18;
endposition = filenameListArray[p,0].Length - startposition;
excipient1 = filenameListArray[p,0].Substring(startposition, endposition);
charindex = excipient1.IndexOf(Path.DirectorySeparatorChar);
if (charindex > 0)
{
excipient1 = excipient1.Substring(0, charindex);
}
else excipient1 = "";
if (string.Equals(excipient,excipient1) == false)
{
swr.WriteLine(" </m3-2-p-4-control-of-excipients>");
swr.WriteLine(" <m3-2-p-4-control-of-excipients excipient=\"{0}\">", excipient1);
excipient = excipient1;
}
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar + "32p4-contr-excip" + Path.DirectorySeparatorChar)
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"specifications") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"analytical-procedures") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"validation-analyt-procedures") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"justification-of-specifications") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"excipients-human-animal") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"novel-excipients") == false)
{
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.4 Excipients</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar + "32p4-contr-excip" + Path.DirectorySeparatorChar) && filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar + "specifications"))
{
swr.WriteLine(" <m3-2-p-4-1-specifications>");
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.4.1 Specifications</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m3-2-p-4-1-specifications>");
idcounter++; indexed = true;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar + "32p4-contr-excip" + Path.DirectorySeparatorChar) && filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar + "analytical-procedures"))
{
swr.WriteLine(" <m3-2-p-4-2-analytical-procedures>");
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.4.2 Analytical Procedures</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m3-2-p-4-2-analytical-procedures>");
idcounter++; indexed = true;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar + "32p4-contr-excip" + Path.DirectorySeparatorChar) && filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar + "validation-analyt-procedures"))
{
swr.WriteLine(" <m3-2-p-4-3-validation-of-analytical-procedures>");
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.4.3 Validation of Analytical Procedures</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m3-2-p-4-3-validation-of-analytical-procedures>");
idcounter++; indexed = true;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar + "32p4-contr-excip" + Path.DirectorySeparatorChar) && filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar + "justification-of-specifications"))
{
swr.WriteLine(" <m3-2-p-4-4-justification-of-specifications>");
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.4.4 Justification of Specifications</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m3-2-p-4-4-justification-of-specifications>");
idcounter++; indexed = true;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar + "32p4-contr-excip" + Path.DirectorySeparatorChar) && filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar + "excipients-human-animal"))
{
swr.WriteLine(" <m3-2-p-4-5-excipients-of-human-or-animal-origin>");
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.4.5 Excipients of Human or Animal Origin</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m3-2-p-4-5-excipients-of-human-or-animal-origin>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p4-contr-excip" + Path.DirectorySeparatorChar + "novel-excipients"))
{
swr.WriteLine(" <m3-2-p-4-6-novel-excipients>");
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.4.6 Novel Excipients</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m3-2-p-4-6-novel-excipients>");
idcounter++; indexed = true;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar + "32p4-contr-excip" + Path.DirectorySeparatorChar) == false && m32p4open == true)
{
swr.WriteLine(" </m3-2-p-4-control-of-excipients>");
m32p4open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod") && m32p5open == false)
{
swr.WriteLine(" <m3-2-p-5-control-of-drug-product>");
m32p5open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod")
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod" + Path.DirectorySeparatorChar + "32p51-spec") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod" + Path.DirectorySeparatorChar + "32p52-analyt-proc") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod" + Path.DirectorySeparatorChar + "32p53-val-analyt-proc") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod" + Path.DirectorySeparatorChar + "32p54-batch-analys") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod" + Path.DirectorySeparatorChar + "32p55-charac-imp") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod" + Path.DirectorySeparatorChar + "32p56-justif-spec") == false)
{
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.5 Control of Drug Product</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod" + Path.DirectorySeparatorChar + "32p51-spec") && m32p51open == false)
{
swr.WriteLine(" <m3-2-p-5-1-specifications>");
m32p51open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod" + Path.DirectorySeparatorChar + "32p51-spec"))
{
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.5.1 Specification(s)</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod" + Path.DirectorySeparatorChar + "32p51-spec") == false && m32p51open == true)
{
swr.WriteLine(" </m3-2-p-5-1-specifications>");
m32p51open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod" + Path.DirectorySeparatorChar + "32p52-analyt-proc") && m32p52open == false)
{
swr.WriteLine(" <m3-2-p-5-2-analytical-procedures>");
m32p52open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod" + Path.DirectorySeparatorChar + "32p52-analyt-proc"))
{
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.5.2 Analytical Procedures</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod" + Path.DirectorySeparatorChar + "32p52-analyt-proc") == false && m32p52open == true)
{
swr.WriteLine(" </m3-2-p-5-2-analytical-procedures>");
m32p52open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod" + Path.DirectorySeparatorChar + "32p53-val-analyt-proc") && m32p53open == false)
{
swr.WriteLine(" <m3-2-p-5-3-validation-of-analytical-procedures>");
m32p53open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod" + Path.DirectorySeparatorChar + "32p53-val-analyt-proc"))
{
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.5.3 Validation of Analytical Procedures</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod" + Path.DirectorySeparatorChar + "32p53-val-analyt-proc") == false && m32p53open == true)
{
swr.WriteLine(" </m3-2-p-5-3-validation-of-analytical-procedures>");
m32p53open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod" + Path.DirectorySeparatorChar + "32p54-batch-analys") && m32p54open == false)
{
swr.WriteLine(" <m3-2-p-5-4-batch-analyses>");
m32p54open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod" + Path.DirectorySeparatorChar + "32p54-batch-analys"))
{
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.5.4 Batch Analyses</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod" + Path.DirectorySeparatorChar + "32p54-batch-analys") == false && m32p54open == true)
{
swr.WriteLine(" </m3-2-p-5-4-batch-analyses>");
m32p54open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod" + Path.DirectorySeparatorChar + "32p55-charac-imp") && m32p55open == false)
{
swr.WriteLine(" <m3-2-p-5-5-characterisation-of-impurities>");
m32p55open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod" + Path.DirectorySeparatorChar + "32p55-charac-imp"))
{
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.5.5 Characterisation of Impurities</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod" + Path.DirectorySeparatorChar + "32p55-charac-imp") == false && m32p55open == true)
{
swr.WriteLine(" </m3-2-p-5-5-characterisation-of-impurities>");
m32p55open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod" + Path.DirectorySeparatorChar + "32p56-justif-spec") && m32p56open == false)
{
swr.WriteLine(" <m3-2-p-5-6-justification-of-specifications>");
m32p56open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod" + Path.DirectorySeparatorChar + "32p56-justif-spec"))
{
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.5.6 Justification of Specifications</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod" + Path.DirectorySeparatorChar + "32p56-justif-spec") == false && m32p56open == true)
{
swr.WriteLine(" </m3-2-p-5-6-justification-of-specifications>");
m32p56open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p5-contr-drug-prod") == false && m32p5open == true)
{
swr.WriteLine(" </m3-2-p-5-control-of-drug-product>");
m32p5open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p6-ref-stand") && m32p6open == false)
{
swr.WriteLine(" <m3-2-p-6-reference-standards-or-materials>");
m32p6open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p6-ref-stand"))
{
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.6 Reference Standards or Materials</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p6-ref-stand") == false && m32p6open == true)
{
swr.WriteLine(" </m3-2-p-6-reference-standards-or-materials>");
m32p6open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p7-cont-closure-sys") && m32p7open == false)
{
swr.WriteLine(" <m3-2-p-7-container-closure-system>");
m32p7open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p7-cont-closure-sys"))
{
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.7 Container Closure System</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p7-cont-closure-sys") == false && m32p7open == true)
{
swr.WriteLine(" </m3-2-p-7-container-closure-system>");
m32p7open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p8-stab") && m32p8open == false)
{
swr.WriteLine(" <m3-2-p-8-stability>");
m32p8open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p8-stab")
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p8-stab" + Path.DirectorySeparatorChar + "stability-summary") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p8-stab" + Path.DirectorySeparatorChar + "postapproval-stability") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p8-stab" + Path.DirectorySeparatorChar + "stability-data") == false)
{
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.8 Stability</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p8-stab" + Path.DirectorySeparatorChar + "postapproval-stability") && m32p82open == false)
{
swr.WriteLine(" <m3-2-p-8-2-post-approval-stability-protocol-and-stability-commitment>");
m32p82open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p8-stab" + Path.DirectorySeparatorChar + "postapproval-stability"))
{
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.8.2 Post-approval Stability Protocol and Stability Commitment</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p8-stab" + Path.DirectorySeparatorChar + "postapproval-stability") == false && m32p82open == true)
{
swr.WriteLine(" </m3-2-p-8-2-post-approval-stability-protocol-and-stability-commitment>");
m32p82open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p8-stab" + Path.DirectorySeparatorChar + "stability-data") && m32p83open == false)
{
swr.WriteLine(" <m3-2-p-8-3-stability-data>");
m32p83open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p8-stab" + Path.DirectorySeparatorChar + "stability-data"))
{
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.8.3 Stability Data</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p8-stab" + Path.DirectorySeparatorChar + "stability-data") == false && m32p83open == true)
{
swr.WriteLine(" </m3-2-p-8-3-stability-data>");
m32p83open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p8-stab" + Path.DirectorySeparatorChar + "stability-summary") && m32p81open == false)
{
swr.WriteLine(" <m3-2-p-8-1-stability-summary-and-conclusion>");
m32p81open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p8-stab" + Path.DirectorySeparatorChar + "stability-summary"))
{
swr.WriteLine(" <leaf ID=\"m32p-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.P.8.1 Stability Summary and Conclusion</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p8-stab" + Path.DirectorySeparatorChar + "stability-summary") == false && m32p81open == true)
{
swr.WriteLine(" </m3-2-p-8-1-stability-summary-and-conclusion>");
m32p81open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32p8-stab") == false && m32p8open == true)
{
swr.WriteLine(" </m3-2-p-8-stability>");
m32p8open = false;
}
if (filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "32-body-data" + Path.DirectorySeparatorChar + "32p-drug-prod") == false && m32popen == true)
{
swr.WriteLine(" </m3-2-p-drug-product>");
m32popen = false;
}
if (filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "32-body-data" + Path.DirectorySeparatorChar + "32r-reg-info") == true && m32ropen == false)
{
swr.WriteLine(" <m3-2-r-regional-information>");
m32ropen = true;
}
if (filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "32-body-data" + Path.DirectorySeparatorChar + "32r-reg-info"))
{
swr.WriteLine(" <leaf ID=\"m32r-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.R Regional Information</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "32-body-data" + Path.DirectorySeparatorChar + "32r-reg-info") == false && m32ropen == true)
{
swr.WriteLine(" </m3-2-r-regional-information>");
m32ropen = false;
}
if (filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "32-body-data" + Path.DirectorySeparatorChar + "32s-drug-sub") && m32sopen == false)
{
charindex = filenameListArray[p,0].IndexOf(Path.DirectorySeparatorChar+"32s-drug-sub");
startposition = charindex + 14;
endposition = filenameListArray[p,0].Length - startposition;
substance = filenameListArray[p,0].Substring(startposition, endposition);
charindex = substance.IndexOf(Path.DirectorySeparatorChar);
substance = substance.Substring(0, charindex);
if (filenameListArray[p, 0].Contains("-manufacturer-") && filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"32s-drug-sub" + Path.DirectorySeparatorChar + "substance-"))
{
apiIndex = filenameListArray[p, 0].IndexOf(Path.DirectorySeparatorChar+"32s-drug-sub" + Path.DirectorySeparatorChar + "substance-");
manufacturerIndex = filenameListArray[p, 0].IndexOf("-manufacturer-");
api = filenameListArray[p, 0].Substring(apiIndex + 24, (manufacturerIndex - (apiIndex + 24)));
manufacturer = filenameListArray[p, 0].Substring(manufacturerIndex + 14);
manufacturer = manufacturer.Substring(0, manufacturer.IndexOf(Path.DirectorySeparatorChar));
}
else
{
api = "";
manufacturer = "";
}
swr.WriteLine(" <m3-2-s-drug-substance substance=\"{0}\" manufacturer=\"{1}\">",api, manufacturer);
m32sopen = true;
}
if (filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "32-body-data" + Path.DirectorySeparatorChar + "32s-drug-sub") && m32sopen == true)
{
charindex = filenameListArray[p,0].IndexOf(Path.DirectorySeparatorChar+"32s-drug-sub");
startposition = charindex + 14;
endposition = filenameListArray[p,0].Length - startposition;
substance1 = filenameListArray[p,0].Substring(startposition, endposition);
charindex = substance1.IndexOf(Path.DirectorySeparatorChar);
substance1 = substance1.Substring(0, charindex);
if (string.Equals(substance,substance1) == false)
{
if (m32s11open)
{
swr.WriteLine(" </m3-2-s-1-1-nomenclature>");
m32s11open = false;
}
if (m32s12open)
{
swr.WriteLine(" </m3-2-s-1-2-structure>");
m32s12open = false;
}
if (m32s13open)
{
swr.WriteLine(" </m3-2-s-1-3-general-properties>");
m32s13open = false;
}
if (m32s1open)
{
swr.WriteLine(" </m3-2-s-1-general-information>");
m32s1open = false;
}
if (m32s21open)
{
swr.WriteLine(" </m3-2-s-2-1-manufacturer>");
m32s21open = false;
}
if (m32s22open)
{
swr.WriteLine(" </m3-2-s-2-2-description-of-manufacturing-process-and-process-controls>");
m32s22open = false;
}
if (m32s23open)
{
swr.WriteLine(" </m3-2-s-2-3-control-of-materials>");
m32s23open = false;
}
if (m32s24open)
{
swr.WriteLine(" </m3-2-s-2-4-controls-of-critical-steps-and-intermediates>");
m32s24open = false;
}
if (m32s25open)
{
swr.WriteLine(" </m3-2-s-2-5-process-validation-and-or-evaluation>");
m32s25open = false;
}
if (m32s26open)
{
swr.WriteLine(" </m3-2-s-2-6-manufacturing-process-development>");
m32s26open = false;
}
if (m32s2open)
{
swr.WriteLine(" </m3-2-s-2-manufacture>");
m32s2open = false;
}
if (m32s31open)
{
swr.WriteLine(" </m3-2-s-3-1-elucidation-of-structure-and-other-characteristics>");
m32s31open = false;
}
if (m32s32open)
{
swr.WriteLine(" </m3-2-s-3-2-impurities>");
m32s32open = false;
}
if (m32s3open)
{
swr.WriteLine(" </m3-2-s-3-characterisation>");
m32s3open = false;
}
if (m32s41open)
{
swr.WriteLine(" </m3-2-s-4-1-specification>");
m32s41open = false;
}
if (m32s42open)
{
swr.WriteLine(" </m3-2-s-4-2-analytical-procedures>");
m32s42open = false;
}
if (m32s43open)
{
swr.WriteLine(" </m3-2-s-4-3-validation-of-analytical-procedures>");
m32s43open = false;
}
if (m32s44open)
{
swr.WriteLine(" </m3-2-s-4-4-batch-analyses>");
m32s44open = false;
}
if (m32s45open)
{
swr.WriteLine(" </m3-2-s-4-5-justification-of-specification>");
m32s45open = false;
}
if (m32s4open)
{
swr.WriteLine(" </m3-2-s-4-control-of-drug-substance>");
m32s4open = false;
}
if (m32s5open)
{
swr.WriteLine(" </m3-2-s-5-reference-standards-or-materials>");
m32s5open = false;
}
if (m32s6open)
{
swr.WriteLine(" </m3-2-s-6-container-closure-system>");
m32s6open = false;
}
if (m32s71open)
{
swr.WriteLine(" </m3-2-s-7-1-stability-summary-and-conclusions>");
m32s71open = false;
}
if (m32s72open)
{
swr.WriteLine(" </m3-2-s-7-2-post-approval-stability-protocol-and-stability-commitment>");
m32s72open = false;
}
if (m32s73open)
{
swr.WriteLine(" </m3-2-s-7-3-stability-data>");
m32s73open = false;
}
if (m32s7open)
{
swr.WriteLine(" </m3-2-s-7-stability>");
m32s7open = false;
}
swr.WriteLine(" </m3-2-s-drug-substance>");
if (filenameListArray[p, 0].Contains("-manufacturer-") && filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"32s-drug-sub" + Path.DirectorySeparatorChar + "substance-"))
{
apiIndex = filenameListArray[p, 0].IndexOf(Path.DirectorySeparatorChar+"32s-drug-sub" + Path.DirectorySeparatorChar + "substance-");
manufacturerIndex = filenameListArray[p, 0].IndexOf("-manufacturer-");
api = filenameListArray[p, 0].Substring(apiIndex + 24, (manufacturerIndex - (apiIndex + 24)));
manufacturer = filenameListArray[p, 0].Substring(manufacturerIndex + 14);
manufacturer = manufacturer.Substring(0, manufacturer.IndexOf(Path.DirectorySeparatorChar));
}
else
{
api = "";
manufacturer = "";
}
swr.WriteLine(" <m3-2-s-drug-substance substance=\"{0}\" manufacturer=\"{1}\">", api, manufacturer);
substance = substance1;
}
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s1-gen-info") && m32s1open == false)
{
swr.WriteLine(" <m3-2-s-1-general-information>");
m32s1open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s1-gen-info")
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s1-gen-info" + Path.DirectorySeparatorChar + "nomenclature") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s1-gen-info" + Path.DirectorySeparatorChar + "structure") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s1-gen-info" + Path.DirectorySeparatorChar + "general-properties") == false)
{
swr.WriteLine(" <leaf ID=\"m3-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.S.1 General Information</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s1-gen-info" + Path.DirectorySeparatorChar + "nomenclature"))
{
swr.WriteLine(" <m3-2-s-1-1-nomenclature>");
swr.WriteLine(" <leaf ID=\"m3-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.S.1.1 Nomenclature</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m3-2-s-1-1-nomenclature>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s1-gen-info" + Path.DirectorySeparatorChar + "structure"))
{
swr.WriteLine(" <m3-2-s-1-2-structure>");
swr.WriteLine(" <leaf ID=\"m3-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.S.1.2 Structure</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m3-2-s-1-2-structure>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s1-gen-info" + Path.DirectorySeparatorChar + "general-properties"))
{
swr.WriteLine(" <m3-2-s-1-3-general-properties>");
swr.WriteLine(" <leaf ID=\"m3-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.S.1.3 General Properties</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m3-2-s-1-3-general-properties>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s1-gen-info") == false && m32s1open == true)
{
swr.WriteLine(" </m3-2-s-1-general-information>");
m32s1open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s2-manuf") && m32s2open == false)
{
swr.WriteLine(" <m3-2-s-2-manufacture>");
m32s2open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s2-manuf")
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s2-manuf" + Path.DirectorySeparatorChar + "manufacturer") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s2-manuf" + Path.DirectorySeparatorChar + "manuf-process-and-controls") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s2-manuf" + Path.DirectorySeparatorChar + "control-of-materials") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s2-manuf" + Path.DirectorySeparatorChar + "control-critical-steps") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s2-manuf" + Path.DirectorySeparatorChar + "process-validation") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s2-manuf" + Path.DirectorySeparatorChar + "manuf-process-development") == false)
{
swr.WriteLine(" <leaf ID=\"m3-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.S.2 Manufacture</title>");
swr.WriteLine(" </leaf>");
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s2-manuf" + Path.DirectorySeparatorChar + "control-critical-steps") && m32s24open == false)
{
swr.WriteLine(" <m3-2-s-2-4-controls-of-critical-steps-and-intermediates>");
m32s24open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s2-manuf" + Path.DirectorySeparatorChar + "control-critical-steps"))
{
swr.WriteLine(" <leaf ID=\"m3-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.S.2.4 Controls of Critical Steps and Intermediates</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s2-manuf" + Path.DirectorySeparatorChar + "control-critical-steps") == false && m32s24open == true)
{
swr.WriteLine(" </m3-2-s-2-4-controls-of-critical-steps-and-intermediates>");
m32s24open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s2-manuf" + Path.DirectorySeparatorChar + "control-of-materials") && m32s23open == false)
{
swr.WriteLine(" <m3-2-s-2-3-control-of-materials>");
m32s23open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s2-manuf" + Path.DirectorySeparatorChar + "control-of-materials"))
{
swr.WriteLine(" <leaf ID=\"m3-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.S.2.3 Control of Materials</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s2-manuf" + Path.DirectorySeparatorChar + "control-of-materials") == false && m32s23open == true)
{
swr.WriteLine(" </m3-2-s-2-3-control-of-materials>");
m32s23open = false;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"32s2-manuf" + Path.DirectorySeparatorChar + "manufacturer") && m32s21open == false)
{
swr.WriteLine(" <m3-2-s-2-1-manufacturer>");
m32s21open = true;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"32s2-manuf" + Path.DirectorySeparatorChar + "manufacturer"))
{
swr.WriteLine(" <leaf ID=\"m3-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p, 3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p, 2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p, 4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p, 1]);
swr.WriteLine(" <title>3.2.S.2.1 Manufacturer(s)</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p, 0].Contains(Path.DirectorySeparatorChar+"32s2-manuf" + Path.DirectorySeparatorChar + "manufacturer") == false && m32s21open == true)
{
swr.WriteLine(" </m3-2-s-2-1-manufacturer>");
m32s21open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s2-manuf" + Path.DirectorySeparatorChar + "manuf-process-and-controls") && m32s22open == false)
{
swr.WriteLine(" <m3-2-s-2-2-description-of-manufacturing-process-and-process-controls>");
m32s22open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s2-manuf" + Path.DirectorySeparatorChar + "manuf-process-and-controls"))
{
swr.WriteLine(" <leaf ID=\"m3-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.S.2.2 Description of Manufacturing Process and Process Controls</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s2-manuf" + Path.DirectorySeparatorChar + "manuf-process-and-controls") == false && m32s22open == true)
{
swr.WriteLine(" </m3-2-s-2-2-description-of-manufacturing-process-and-process-controls>");
m32s22open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s2-manuf" + Path.DirectorySeparatorChar + "manuf-process-development") && m32s26open == false)
{
swr.WriteLine(" <m3-2-s-2-6-manufacturing-process-development>");
m32s26open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s2-manuf" + Path.DirectorySeparatorChar + "manuf-process-development"))
{
swr.WriteLine(" <leaf ID=\"m3-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.S.2.6 Manufacturing Process Development</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s2-manuf" + Path.DirectorySeparatorChar + "manuf-process-development") == false && m32s26open == true)
{
swr.WriteLine(" </m3-2-s-2-6-manufacturing-process-development>");
m32s26open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s2-manuf" + Path.DirectorySeparatorChar + "process-validation") && m32s25open == false)
{
swr.WriteLine(" <m3-2-s-2-5-process-validation-and-or-evaluation>");
m32s25open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s2-manuf" + Path.DirectorySeparatorChar + "process-validation"))
{
swr.WriteLine(" <leaf ID=\"m3-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.S.2.5 Process Validation and/or Evaluation</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s2-manuf" + Path.DirectorySeparatorChar + "process-validation") == false && m32s25open == true)
{
swr.WriteLine(" </m3-2-s-2-5-process-validation-and-or-evaluation>");
m32s25open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s2-manuf") == false && m32s2open == true)
{
swr.WriteLine(" </m3-2-s-2-manufacture>");
m32s2open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s3-charac") && m32s3open == false)
{
swr.WriteLine(" <m3-2-s-3-characterisation>");
m32s3open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s3-charac")
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s3-charac" + Path.DirectorySeparatorChar + "elucidation-of-structure") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s3-charac" + Path.DirectorySeparatorChar + "impurities") == false)
{
swr.WriteLine(" <leaf ID=\"m3-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.S.3 Characterisation</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s3-charac" + Path.DirectorySeparatorChar + "elucidation-of-structure"))
{
swr.WriteLine(" <m3-2-s-3-1-elucidation-of-structure-and-other-characteristics>");
swr.WriteLine(" <leaf ID=\"m3-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.S.3.1 Elucidation of Structure and Other Characteristics</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m3-2-s-3-1-elucidation-of-structure-and-other-characteristics>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s3-charac" + Path.DirectorySeparatorChar + "impurities"))
{
swr.WriteLine(" <m3-2-s-3-2-impurities>");
swr.WriteLine(" <leaf ID=\"m3-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.S.3.2 Impurities</title>");
swr.WriteLine(" </leaf>");
swr.WriteLine(" </m3-2-s-3-2-impurities>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s3-charac") == false && m32s3open == true)
{
swr.WriteLine(" </m3-2-s-3-characterisation>");
m32s3open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s4-contr-drug-sub") && m32s4open == false)
{
swr.WriteLine(" <m3-2-s-4-control-of-drug-substance>");
m32s4open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s4-contr-drug-sub")
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s4-contr-drug-sub" + Path.DirectorySeparatorChar + "32s41-spec") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s4-contr-drug-sub" + Path.DirectorySeparatorChar + "32s42-analyt-proc") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s4-contr-drug-sub" + Path.DirectorySeparatorChar + "32s43-val-analyt-proc") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s4-contr-drug-sub" + Path.DirectorySeparatorChar + "32s44-batch-analys") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s4-contr-drug-sub" + Path.DirectorySeparatorChar + "32s45-justif-spec") == false)
{
swr.WriteLine(" <leaf ID=\"m3-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.S.4 Control of Drug Substance</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s4-contr-drug-sub" + Path.DirectorySeparatorChar + "32s41-spec") && m32s41open == false)
{
swr.WriteLine(" <m3-2-s-4-1-specification>");
m32s41open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s4-contr-drug-sub" + Path.DirectorySeparatorChar + "32s41-spec"))
{
swr.WriteLine(" <leaf ID=\"m3-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.S.4.1 Specifications</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s4-contr-drug-sub" + Path.DirectorySeparatorChar + "32s41-spec") == false && m32s41open == true)
{
swr.WriteLine(" </m3-2-s-4-1-specification>");
m32s41open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s4-contr-drug-sub" + Path.DirectorySeparatorChar + "32s42-analyt-proc") && m32s42open == false)
{
swr.WriteLine(" <m3-2-s-4-2-analytical-procedures>");
m32s42open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s4-contr-drug-sub" + Path.DirectorySeparatorChar + "32s42-analyt-proc"))
{
swr.WriteLine(" <leaf ID=\"m3-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.S.4.2 Analytical Procedures</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s4-contr-drug-sub" + Path.DirectorySeparatorChar + "32s42-analyt-proc") == false && m32s42open == true)
{
swr.WriteLine(" </m3-2-s-4-2-analytical-procedures>");
m32s42open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s4-contr-drug-sub" + Path.DirectorySeparatorChar + "32s43-val-analyt-proc") && m32s43open == false)
{
swr.WriteLine(" <m3-2-s-4-3-validation-of-analytical-procedures>");
m32s43open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s4-contr-drug-sub" + Path.DirectorySeparatorChar + "32s43-val-analyt-proc"))
{
swr.WriteLine(" <leaf ID=\"m3-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.S.4.3 Validation of Analytical Procedures</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s4-contr-drug-sub" + Path.DirectorySeparatorChar + "32s43-val-analyt-proc") == false && m32s43open == true)
{
swr.WriteLine(" </m3-2-s-4-3-validation-of-analytical-procedures>");
m32s43open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s4-contr-drug-sub" + Path.DirectorySeparatorChar + "32s44-batch-analys") && m32s44open == false)
{
swr.WriteLine(" <m3-2-s-4-4-batch-analyses>");
m32s44open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s4-contr-drug-sub" + Path.DirectorySeparatorChar + "32s44-batch-analys"))
{
swr.WriteLine(" <leaf ID=\"m3-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.S.4.4 Batch Analyses</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s4-contr-drug-sub" + Path.DirectorySeparatorChar + "32s44-batch-analys") == false && m32s44open == true)
{
swr.WriteLine(" </m3-2-s-4-4-batch-analyses>");
m32s44open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s4-contr-drug-sub" + Path.DirectorySeparatorChar + "32s45-justif-spec") && m32s45open == false)
{
swr.WriteLine(" <m3-2-s-4-5-justification-of-specification>");
m32s45open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s4-contr-drug-sub" + Path.DirectorySeparatorChar + "32s45-justif-spec"))
{
swr.WriteLine(" <leaf ID=\"m3-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.S.4.5 Justification of Specification</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s4-contr-drug-sub" + Path.DirectorySeparatorChar + "32s45-justif-spec") == false && m32s45open == true)
{
swr.WriteLine(" </m3-2-s-4-5-justification-of-specification>");
m32s45open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s4-contr-drug-sub") == false && m32s4open == true)
{
swr.WriteLine(" </m3-2-s-4-control-of-drug-substance>");
m32s4open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s5-ref-stand") && m32s5open == false)
{
swr.WriteLine(" <m3-2-s-5-reference-standards-or-materials>");
m32s5open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s5-ref-stand"))
{
swr.WriteLine(" <leaf ID=\"m3-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.S.5 Reference Standards or Materials</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s5-ref-stand") == false && m32s5open == true)
{
swr.WriteLine(" </m3-2-s-5-reference-standards-or-materials>");
m32s5open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s6-cont-closure-sys") && m32s6open == false)
{
swr.WriteLine(" <m3-2-s-6-container-closure-system>");
m32s6open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s6-cont-closure-sys"))
{
swr.WriteLine(" <leaf ID=\"m3-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.S.6 Container Closure System</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s6-cont-closure-sys") == false && m32s6open == true)
{
swr.WriteLine(" </m3-2-s-6-container-closure-system>");
m32s6open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s7-stab") && m32s7open == false)
{
swr.WriteLine(" <m3-2-s-7-stability>");
m32s7open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s7-stab")
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s7-stab" + Path.DirectorySeparatorChar + "stability-summary") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s7-stab" + Path.DirectorySeparatorChar + "postapproval-stability") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s7-stab" + Path.DirectorySeparatorChar + "stability-data") == false)
{
swr.WriteLine(" <leaf ID=\"m3-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.S.7 Stability</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s7-stab" + Path.DirectorySeparatorChar + "postapproval-stability") && m32s72open == false)
{
swr.WriteLine(" <m3-2-s-7-2-post-approval-stability-protocol-and-stability-commitment>");
m32s72open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s7-stab" + Path.DirectorySeparatorChar + "postapproval-stability"))
{
swr.WriteLine(" <leaf ID=\"m3-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.S.7.2 Post-approval Stability Protocol and Stability Commitment</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s7-stab" + Path.DirectorySeparatorChar + "postapproval-stability") == false && m32s72open == true)
{
swr.WriteLine(" </m3-2-s-7-2-post-approval-stability-protocol-and-stability-commitment>");
m32s72open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s7-stab" + Path.DirectorySeparatorChar + "stability-data") && m32s73open == false)
{
swr.WriteLine(" <m3-2-s-7-3-stability-data>");
m32s73open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s7-stab" + Path.DirectorySeparatorChar + "stability-data"))
{
swr.WriteLine(" <leaf ID=\"m3-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.S.7.3 Stability Data</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s7-stab" + Path.DirectorySeparatorChar + "stability-data") == false && m32s73open == true)
{
swr.WriteLine(" </m3-2-s-7-3-stability-data>");
m32s73open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s7-stab" + Path.DirectorySeparatorChar + "stability-summary") && m32s71open == false)
{
swr.WriteLine(" <m3-2-s-7-1-stability-summary-and-conclusions>");
m32s71open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s7-stab" + Path.DirectorySeparatorChar + "stability-summary"))
{
swr.WriteLine(" <leaf ID=\"m3-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.2.S.7.1 Stability Summary and Conclusions</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s7-stab" + Path.DirectorySeparatorChar + "stability-summary") == false && m32s71open == true)
{
swr.WriteLine(" </m3-2-s-7-1-stability-summary-and-conclusions>");
m32s71open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"32s7-stab") == false && m32s7open == true)
{
swr.WriteLine(" </m3-2-s-7-stability>");
m32s7open = false;
}
if (filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "32-body-data" + Path.DirectorySeparatorChar + "32s-drug-sub") == false && m32sopen == true)
{
swr.WriteLine(" </m3-2-s-drug-substance>");
m32sopen = false;
}
if (filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "32-body-data") == false && m32open == true)
{
swr.WriteLine(" </m3-2-body-of-data>");
m32open = false;
}
if (filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "33-lit-ref") && m33open == false)
{
swr.WriteLine(" <m3-3-literature-references>");
m33open = true;
idcounter = 1;
}
if (filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "33-lit-ref"))
{
swr.WriteLine(" <leaf ID=\"m33-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>3.3 Literature Reference - {0}</title>", idcounter.ToString());
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m3" + Path.DirectorySeparatorChar + "33-lit-ref") == false && m33open == true)
{
swr.WriteLine(" </m3-3-literature-references>");
m33open = false;
}
if (filenameListArray[p, 0].Contains("m3" + Path.DirectorySeparatorChar) == false && m3open == true)
{
swr.WriteLine(" </m3-quality>");
m3open = false;
idcounter = 0;
}
//Module 4
if (filenameListArray[p, 0].Contains("m4" + Path.DirectorySeparatorChar) == true && m4open == false)
{
swr.WriteLine(" <m4-nonclinical-study-reports>");
m4open = true;
}
if (filenameListArray[p, 0].Contains("m4" + Path.DirectorySeparatorChar) == true
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "43-lit-ref") == false)
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4 Nonclinical Study Reports</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep") && m42open == false)
{
swr.WriteLine(" <m4-2-study-reports>");
m42open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep")
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "421-pharmacol") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox") == false)
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2 Study Reports</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "421-pharmacol") && m421open == false)
{
swr.WriteLine(" <m4-2-1-pharmacology>");
m421open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "421-pharmacol")
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "421-pharmacol" + Path.DirectorySeparatorChar + "4211-prim-pd") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "421-pharmacol" + Path.DirectorySeparatorChar + "4212-sec-pd") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "421-pharmacol" + Path.DirectorySeparatorChar + "4213-safety-pharmacol") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "421-pharmacol" + Path.DirectorySeparatorChar + "4214-pd-drug-interact") == false)
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.1 Pharmacology</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "421-pharmacol" + Path.DirectorySeparatorChar + "4211-prim-pd") && m4211open == false)
{
swr.WriteLine(" <m4-2-1-1-primary-pharmacodynamics>");
m4211open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "421-pharmacol" + Path.DirectorySeparatorChar + "4211-prim-pd"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.1.1 Primary Pharmacodynamics</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "421-pharmacol" + Path.DirectorySeparatorChar + "4211-prim-pd") == false && m4211open == true)
{
swr.WriteLine(" </m4-2-1-1-primary-pharmacodynamics>");
m4211open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "421-pharmacol" + Path.DirectorySeparatorChar + "4212-sec-pd") && m4212open == false)
{
swr.WriteLine(" <m4-2-1-2-secondary-pharmacodynamics>");
m4212open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "421-pharmacol" + Path.DirectorySeparatorChar + "4212-sec-pd"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.1.2 Secondary Pharmacodynamics</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "421-pharmacol" + Path.DirectorySeparatorChar + "4212-sec-pd") == false && m4212open == true)
{
swr.WriteLine(" </m4-2-1-2-secondary-pharmacodynamics>");
m4212open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "421-pharmacol" + Path.DirectorySeparatorChar + "4213-safety-pharmacol") && m4213open == false)
{
swr.WriteLine(" <m4-2-1-3-safety-pharmacology>");
m4213open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "421-pharmacol" + Path.DirectorySeparatorChar + "4213-safety-pharmacol"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.1.3 Safety Pharmacology</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "421-pharmacol" + Path.DirectorySeparatorChar + "4213-safety-pharmacol") == false && m4213open == true)
{
swr.WriteLine(" </m4-2-1-3-safety-pharmacology>");
m4213open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "421-pharmacol" + Path.DirectorySeparatorChar + "4214-pd-drug-interact") && m4214open == false)
{
swr.WriteLine(" <m4-2-1-4-pharmacodynamic-drug-interactions>");
m4214open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "421-pharmacol" + Path.DirectorySeparatorChar + "4214-pd-drug-interact"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.1.4 Pharmacodynamic Drug Interactions</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "421-pharmacol" + Path.DirectorySeparatorChar + "4214-pd-drug-interact") == false && m4214open == true)
{
swr.WriteLine(" </m4-2-1-4-pharmacodynamic-drug-interactions>");
m4214open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "421-pharmacol") == false && m421open == true)
{
swr.WriteLine(" </m4-2-1-pharmacology>");
m421open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk") && m422open == false)
{
swr.WriteLine(" <m4-2-2-pharmacokinetics>");
m422open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk")
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4221-analyt-met-val") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4222-absorp") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4223-distrib") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4224-metab") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4225-excr") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4226-pk-drug-interact") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4227-other-pk-stud") == false)
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.2 Pharmacokinetics</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4221-analyt-met-val") && m4221open == false)
{
swr.WriteLine(" <m4-2-2-1-analytical-methods-and-validation-reports>");
m4221open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4221-analyt-met-val"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.2.1 Analytical Methods and Validation Reports</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4221-analyt-met-val") == false && m4221open == true)
{
swr.WriteLine(" </m4-2-2-1-analytical-methods-and-validation-reports>");
m4221open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4222-absorp") && m4222open == false)
{
swr.WriteLine(" <m4-2-2-2-absorption>");
m4222open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4222-absorp"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.2.2 Absorption</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4222-absorp") == false && m4222open == true)
{
swr.WriteLine(" </m4-2-2-2-absorption>");
m4222open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4223-distrib") && m4223open == false)
{
swr.WriteLine(" <m4-2-2-3-distribution>");
m4223open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4223-distrib"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.2.3 Distribution</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4223-distrib") == false && m4223open == true)
{
swr.WriteLine(" </m4-2-2-3-distribution>");
m4223open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4224-metab") && m4224open == false)
{
swr.WriteLine(" <m4-2-2-4-metabolism>");
m4224open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4224-metab"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.2.4 Metabolism</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4224-metab") == false && m4224open == true)
{
swr.WriteLine(" </m4-2-2-4-metabolism>");
m4224open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4225-excr") && m4225open == false)
{
swr.WriteLine(" <m4-2-2-5-excretion>");
m4225open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4225-excr"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.2.5 Excretion</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4225-excr") == false && m4225open == true)
{
swr.WriteLine(" </m4-2-2-5-excretion>");
m4225open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4226-pk-drug-interact") && m4226open == false)
{
swr.WriteLine(" <m4-2-2-6-pharmacokinetic-drug-interactions>");
m4226open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4226-pk-drug-interact"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.2.6 Pharmacokinetic Drug Interactions</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4226-pk-drug-interact") == false && m4226open == true)
{
swr.WriteLine(" </m4-2-2-6-pharmacokinetic-drug-interactions>");
m4226open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4227-other-pk-stud") && m4227open == false)
{
swr.WriteLine(" <m4-2-2-7-other-pharmacokinetic-studies>");
m4227open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4227-other-pk-stud"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.2.7 Other Pharmacokinetic Studies</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk" + Path.DirectorySeparatorChar + "4227-other-pk-stud") == false && m4227open == true)
{
swr.WriteLine(" </m4-2-2-7-other-pharmacokinetic-studies>");
m4227open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "422-pk") == false && m422open == true)
{
swr.WriteLine(" </m4-2-2-pharmacokinetics>");
m422open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox") && m423open == false)
{
swr.WriteLine(" <m4-2-3-toxicology>");
m423open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox")
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4231-single-dose-tox") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4232-repeat-dose-tox") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4233-genotox") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4234-carcigen") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4235-repro-dev-tox") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4236-loc-tol") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud") == false)
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.3 Toxicology</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4231-single-dose-tox") && m4231open == false)
{
swr.WriteLine(" <m4-2-3-1-single-dose-toxicity>");
m4231open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4231-single-dose-tox"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.3.1 Single-Dose Toxicity</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4231-single-dose-tox") == false && m4231open == true)
{
swr.WriteLine(" </m4-2-3-1-single-dose-toxicity>");
m4231open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4232-repeat-dose-tox") && m4232open == false)
{
swr.WriteLine(" <m4-2-3-2-repeat-dose-toxicity>");
m4232open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4232-repeat-dose-tox"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.3.2 Repeat-Dose Toxicity</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4232-repeat-dose-tox") == false && m4232open == true)
{
swr.WriteLine(" </m4-2-3-2-repeat-dose-toxicity>");
m4232open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4233-genotox") && m4233open == false)
{
swr.WriteLine(" <m4-2-3-3-genotoxicity>");
m4233open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4233-genotox")
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4233-genotox" + Path.DirectorySeparatorChar + "42331-in-vitro") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4233-genotox" + Path.DirectorySeparatorChar + "42332-in-vivo") == false)
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.3.3 Genotoxicity</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4233-genotox" + Path.DirectorySeparatorChar + "42331-in-vitro") && m42331open == false)
{
swr.WriteLine(" <m4-2-3-3-1-in-vitro>");
m42331open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4233-genotox" + Path.DirectorySeparatorChar + "42331-in-vitro"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.3.3.1 In vitro</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4233-genotox" + Path.DirectorySeparatorChar + "42331-in-vitro") == false && m42331open == true)
{
swr.WriteLine(" </m4-2-3-3-1-in-vitro>");
m42331open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4233-genotox" + Path.DirectorySeparatorChar + "42332-in-vivo") && m42332open == false)
{
swr.WriteLine(" <m4-2-3-3-2-in-vivo>");
m42332open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4233-genotox" + Path.DirectorySeparatorChar + "42332-in-vivo"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.3.3.2 In vivo</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4233-genotox" + Path.DirectorySeparatorChar + "42332-in-vivo") == false && m42332open == true)
{
swr.WriteLine(" </m4-2-3-3-2-in-vivo>");
m42332open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4233-genotox") == false && m4233open == true)
{
swr.WriteLine(" </m4-2-3-3-genotoxicity>");
m4233open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4234-carcigen") && m4234open == false)
{
swr.WriteLine(" <m4-2-3-4-carcinogenicity>");
m4234open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4234-carcigen")
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4234-carcigen" + Path.DirectorySeparatorChar + "42341-lt-stud") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4234-carcigen" + Path.DirectorySeparatorChar + "42342-smt-stud") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4234-carcigen" + Path.DirectorySeparatorChar + "42343-other-stud") == false)
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.3.4 Carcinogenicity</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4234-carcigen" + Path.DirectorySeparatorChar + "42341-lt-stud") && m42341open == false)
{
swr.WriteLine(" <m4-2-3-4-1-long-term-studies>");
m42341open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4234-carcigen" + Path.DirectorySeparatorChar + "42341-lt-stud"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.3.4.1 Long-term studies</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4234-carcigen" + Path.DirectorySeparatorChar + "42341-lt-stud") == false && m42341open == true)
{
swr.WriteLine(" </m4-2-3-4-1-long-term-studies>");
m42341open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4234-carcigen" + Path.DirectorySeparatorChar + "42342-smt-stud") && m42342open == false)
{
swr.WriteLine(" <m4-2-3-4-2-short-or-medium-term-studies>");
m42342open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4234-carcigen" + Path.DirectorySeparatorChar + "42342-smt-stud"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.3.4.2 Short- or medium-term studies</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4234-carcigen" + Path.DirectorySeparatorChar + "42342-smt-stud") == false && m42342open == true)
{
swr.WriteLine(" </m4-2-3-4-2-short-or-medium-term-studies>");
m42342open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4234-carcigen" + Path.DirectorySeparatorChar + "42343-other-stud") && m42343open == false)
{
swr.WriteLine(" <m4-2-3-4-3-other-studies>");
m42343open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4234-carcigen" + Path.DirectorySeparatorChar + "42343-other-stud"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.3.4.3 Other studies</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4234-carcigen" + Path.DirectorySeparatorChar + "42343-other-stud") == false && m42343open == true)
{
swr.WriteLine(" </m4-2-3-4-3-other-studies>");
m42343open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4234-carcigen") == false && m4234open == true)
{
swr.WriteLine(" </m4-2-3-4-carcinogenicity>");
m4234open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4235-repro-dev-tox") && m4235open == false)
{
swr.WriteLine(" <m4-2-3-5-reproductive-and-developmental-toxicity>");
m4235open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4235-repro-dev-tox")
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4235-repro-dev-tox" + Path.DirectorySeparatorChar + "42351-fert-embryo-dev") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4235-repro-dev-tox" + Path.DirectorySeparatorChar + "42352-embryo-fetal-dev") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4235-repro-dev-tox" + Path.DirectorySeparatorChar + "42353-pre-postnatal-dev") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4235-repro-dev-tox" + Path.DirectorySeparatorChar + "42354-juv") == false)
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.3.5 Reproductive and Developmental Toxicity</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4235-repro-dev-tox" + Path.DirectorySeparatorChar + "42351-fert-embryo-dev") && m42351open == false)
{
swr.WriteLine(" <m4-2-3-5-1-fertility-and-early-embryonic-development>");
m42351open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4235-repro-dev-tox" + Path.DirectorySeparatorChar + "42351-fert-embryo-dev"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.3.5.1 Fertility and early embryonic development</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4235-repro-dev-tox" + Path.DirectorySeparatorChar + "42351-fert-embryo-dev") == false && m42351open == true)
{
swr.WriteLine(" </m4-2-3-5-1-fertility-and-early-embryonic-development>");
m42351open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4235-repro-dev-tox" + Path.DirectorySeparatorChar + "42352-embryo-fetal-dev") && m42352open == false)
{
swr.WriteLine(" <m4-2-3-5-2-embryo-fetal-development>");
m42352open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4235-repro-dev-tox" + Path.DirectorySeparatorChar + "42352-embryo-fetal-dev"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.3.5.2 Embryo-fetal development</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4235-repro-dev-tox" + Path.DirectorySeparatorChar + "42352-embryo-fetal-dev") == false && m42352open == true)
{
swr.WriteLine(" </m4-2-3-5-2-embryo-fetal-development>");
m42352open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4235-repro-dev-tox" + Path.DirectorySeparatorChar + "42353-pre-postnatal-dev") && m42353open == false)
{
swr.WriteLine(" <m4-2-3-5-3-prenatal-and-postnatal-development-including-maternal-function>");
m42353open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4235-repro-dev-tox" + Path.DirectorySeparatorChar + "42353-pre-postnatal-dev"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.3.5.3 Prenatal and postnatal development, including maternal function</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4235-repro-dev-tox" + Path.DirectorySeparatorChar + "42353-pre-postnatal-dev") == false && m42353open == true)
{
swr.WriteLine(" </m4-2-3-5-3-prenatal-and-postnatal-development-including-maternal-function>");
m42353open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4235-repro-dev-tox" + Path.DirectorySeparatorChar + "42354-juv") && m42354open == false)
{
swr.WriteLine(" <m4-2-3-5-4-studies-in-which-the-offspring-juvenile-animals-are-dosed-and-or-further-evaluated>");
m42354open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4235-repro-dev-tox" + Path.DirectorySeparatorChar + "42354-juv"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.3.5.4 Studies in which the offspring (juvenile animals) are dosed and/or further evaluated</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4235-repro-dev-tox" + Path.DirectorySeparatorChar + "42354-juv") == false && m42354open == true)
{
swr.WriteLine(" </m4-2-3-5-4-studies-in-which-the-offspring-juvenile-animals-are-dosed-and-or-further-evaluated>");
m42354open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4235-repro-dev-tox") == false && m4235open == true)
{
swr.WriteLine(" </m4-2-3-5-reproductive-and-developmental-toxicity>");
m4235open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4236-loc-tol") && m4236open == false)
{
swr.WriteLine(" <m4-2-3-6-local-tolerance>");
m4236open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4236-loc-tol"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.3.6 Local Tolerance</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4236-loc-tol") == false && m4236open == true)
{
swr.WriteLine(" </m4-2-3-6-local-tolerance>");
m4236open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud") && m4237open == false)
{
swr.WriteLine(" <m4-2-3-7-other-toxicity-studies>");
m4237open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud")
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42371-antigen") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42372-immunotox") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42373-mechan-stud") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42374-dep") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42375-metab") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42376-imp") == false
&& filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42377-other") == false)
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.3.7 Other Toxicity Studies</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42371-antigen") && m42371open == false)
{
swr.WriteLine(" <m4-2-3-7-1-antigenicity>");
m42371open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42371-antigen"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.3.7.1 Antigenicity</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42371-antigen") == false && m42371open == true)
{
swr.WriteLine(" </m4-2-3-7-1-antigenicity>");
m42371open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42372-immunotox") && m42372open == false)
{
swr.WriteLine(" <m4-2-3-7-2-immunotoxicity>");
m42372open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42372-immunotox"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.3.7.2 Immunotoxicity</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42372-immunotox") == false && m42372open == true)
{
swr.WriteLine(" </m4-2-3-7-2-immunotoxicity>");
m42372open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42373-mechan-stud") && m42373open == false)
{
swr.WriteLine(" <m4-2-3-7-3-mechanistic-studies>");
m42373open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42373-mechan-stud"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.3.7.3 Mechanistic studies</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42373-mechan-stud") == false && m42373open == true)
{
swr.WriteLine(" </m4-2-3-7-3-mechanistic-studies>");
m42373open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42374-dep") && m42374open == false)
{
swr.WriteLine(" <m4-2-3-7-4-dependence>");
m42374open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42374-dep"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.3.7.4 Dependence</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42374-dep") == false && m42374open == true)
{
swr.WriteLine(" </m4-2-3-7-4-dependence>");
m42374open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42375-metab") && m42375open == false)
{
swr.WriteLine(" <m4-2-3-7-5-metabolites>");
m42375open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42375-metab"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.3.7.5 Metabolites</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42375-metab") == false && m42375open == true)
{
swr.WriteLine(" </m4-2-3-7-5-metabolites>");
m42375open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42376-imp") && m42376open == false)
{
swr.WriteLine(" <m4-2-3-7-6-impurities>");
m42376open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42376-imp"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.3.7.6 Impurities</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42376-imp") == false && m42376open == true)
{
swr.WriteLine(" </m4-2-3-7-6-impurities>");
m42376open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42377-other") && m42377open == false)
{
swr.WriteLine(" <m4-2-3-7-7-other>");
m42377open = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42377-other"))
{
swr.WriteLine(" <leaf ID=\"m4-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.2.3.7.7 Other</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud" + Path.DirectorySeparatorChar + "42377-other") == false && m42377open == true)
{
swr.WriteLine(" </m4-2-3-7-7-other>");
m42377open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox" + Path.DirectorySeparatorChar + "4237-other-tox-stud") == false && m4237open == true)
{
swr.WriteLine(" </m4-2-3-7-other-toxicity-studies>");
m4237open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep" + Path.DirectorySeparatorChar + "423-tox") == false && m423open == true)
{
swr.WriteLine(" </m4-2-3-toxicology>");
m423open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "42-stud-rep") == false && m42open == true)
{
swr.WriteLine(" </m4-2-study-reports>");
m42open = false;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "43-lit-ref") && m43open == false)
{
swr.WriteLine(" <m4-3-literature-references>");
m43open = true;
idcounter = 1;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "43-lit-ref"))
{
swr.WriteLine(" <leaf ID=\"m43-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>4.3 Literature Reference - {0}</title>", filenameListArray[p, 0].Substring(filenameListArray[p, 0].LastIndexOf(Path.DirectorySeparatorChar) + 1, (filenameListArray[p, 0].Length - (filenameListArray[p, 0].LastIndexOf(Path.DirectorySeparatorChar) + 5))));
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m4" + Path.DirectorySeparatorChar + "43-lit-ref") == false && m43open == true)
{
swr.WriteLine(" </m4-3-literature-references>");
m43open = false;
}
if (filenameListArray[p, 0].Contains("m4" + Path.DirectorySeparatorChar) == false && m4open == true)
{
swr.WriteLine(" </m4-nonclinical-study-reports>");
m4open = false;
}
//Module 5
if (filenameListArray[p, 0].Contains("m5" + Path.DirectorySeparatorChar) == true && m5open == false)
{
swr.WriteLine(" <m5-clinical-study-reports>");
m5open = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "52-tab-list") && m52open == false)
{
swr.WriteLine(" <m5-2-tabular-listing-of-all-clinical-studies>");
m52open = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "52-tab-list"))
{
swr.WriteLine(" <leaf ID=\"m5-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.2 Tabular Listing of all Clinical Studies</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "52-tab-list") == false && m52open == true)
{
swr.WriteLine(" </m5-2-tabular-listing-of-all-clinical-studies>");
m52open = false;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep") && m53open == false)
{
swr.WriteLine(" <m5-3-clinical-study-reports>");
m53open = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep")
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"531-rep-biopharm-stud") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"532-rep-stud-pk-human-biomat") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"532-rep-stud-pk-human-biomat") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"533-rep-human-pk-stud") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"534-rep-human-pd-stud") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"535-rep-effic-safety-stud") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"536-postmark-exp") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"537-crf-ipl") == false)
{
swr.WriteLine(" <leaf ID=\"m5-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.3 Clinical Study Reports</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "531-rep-biopharm-stud") && m531open == false)
{
swr.WriteLine(" <m5-3-1-reports-of-biopharmaceutic-studies>");
m531open = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "531-rep-biopharm-stud")
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5311-ba-stud-rep") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5312-compar-ba-be-stud-rep") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5313-in-vitro-in-vivo-corr-stud-rep") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5314-bioanalyt-analyt-met") == false
)
{
swr.WriteLine(" <leaf ID=\"m5-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.3.1 Reports of Biopharmaceutic Studies</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "531-rep-biopharm-stud" + Path.DirectorySeparatorChar + "5311-ba-stud-rep") && m5311open == false)
{
swr.WriteLine(" <m5-3-1-1-bioavailability-study-reports>");
m5311open = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "531-rep-biopharm-stud" + Path.DirectorySeparatorChar + "5311-ba-stud-rep"))
{
swr.WriteLine(" <leaf ID=\"m5-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.3.1.1 Bioavailability (BA) Study Reports</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "531-rep-biopharm-stud" + Path.DirectorySeparatorChar + "5311-ba-stud-rep") == false && m5311open == true)
{
swr.WriteLine(" </m5-3-1-1-bioavailability-study-reports>");
m5311open = false;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "531-rep-biopharm-stud" + Path.DirectorySeparatorChar + "5312-compar-ba-be-stud-rep") && m5312open == false)
{
swr.WriteLine(" <m5-3-1-2-comparative-ba-and-bioequivalence-study-reports>");
m5312open = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "531-rep-biopharm-stud" + Path.DirectorySeparatorChar + "5312-compar-ba-be-stud-rep"))
{
swr.WriteLine(" <leaf ID=\"m5-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.3.1.2 Comparative BA and Bioequivalence (BE) Study Reports</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "531-rep-biopharm-stud" + Path.DirectorySeparatorChar + "5312-compar-ba-be-stud-rep") == false && m5312open == true)
{
swr.WriteLine(" </m5-3-1-2-comparative-ba-and-bioequivalence-study-reports>");
m5312open = false;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "531-rep-biopharm-stud" + Path.DirectorySeparatorChar + "5313-in-vitro-in-vivo-corr-stud-rep") && m5313open == false)
{
swr.WriteLine(" <m5-3-1-3-in-vitro-in-vivo-correlation-study-reports>");
m5313open = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "531-rep-biopharm-stud" + Path.DirectorySeparatorChar + "5313-in-vitro-in-vivo-corr-stud-rep"))
{
swr.WriteLine(" <leaf ID=\"m5-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.3.1.3 In vitro - In vivo Correlation Study Reports</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "531-rep-biopharm-stud" + Path.DirectorySeparatorChar + "5313-in-vitro-in-vivo-corr-stud-rep") == false && m5313open == true)
{
swr.WriteLine(" </m5-3-1-3-in-vitro-in-vivo-correlation-study-reports>");
m5313open = false;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "531-rep-biopharm-stud" + Path.DirectorySeparatorChar + "5314-bioanalyt-analyt-met") && m5314open == false)
{
swr.WriteLine(" <m5-3-1-4-reports-of-bioanalytical-and-analytical-methods-for-human-studies>");
m5314open = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "531-rep-biopharm-stud" + Path.DirectorySeparatorChar + "5314-bioanalyt-analyt-met"))
{
swr.WriteLine(" <leaf ID=\"m5-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.3.1.4 Reports of Bioanalytical and Analytical Methods for Human Studies</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "531-rep-biopharm-stud" + Path.DirectorySeparatorChar + "5314-bioanalyt-analyt-met") == false && m5314open == true)
{
swr.WriteLine(" </m5-3-1-4-reports-of-bioanalytical-and-analytical-methods-for-human-studies>");
m5314open = false;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "531-rep-biopharm-stud") == false && m531open == true)
{
swr.WriteLine(" </m5-3-1-reports-of-biopharmaceutic-studies>");
m531open = false;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "532-rep-stud-pk-human-biomat") && m532open == false)
{
swr.WriteLine(" <m5-3-2-reports-of-studies-pertinent-to-pharmacokinetics-using-human-biomaterials>");
m532open = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "532-rep-stud-pk-human-biomat")
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5321-plasma-prot-bind-stud-rep") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5322-rep-hep-metab-interact-stud") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5323-stud-other-human-biomat") == false)
{
swr.WriteLine(" <leaf ID=\"m5-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.3.2 Reports of Studies Pertinent to Pharmacokinetics using Human Biomaterials</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "532-rep-stud-pk-human-biomat" + Path.DirectorySeparatorChar + "5321-plasma-prot-bind-stud-rep") && m5321open == false)
{
swr.WriteLine(" <m5-3-2-1-plasma-protein-binding-study-reports>");
m5321open = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "532-rep-stud-pk-human-biomat" + Path.DirectorySeparatorChar + "5321-plasma-prot-bind-stud-rep"))
{
swr.WriteLine(" <leaf ID=\"m5-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.3.2.1 Plasma Protein Binding Study Reports</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "532-rep-stud-pk-human-biomat" + Path.DirectorySeparatorChar + "5321-plasma-prot-bind-stud-rep") == false && m5321open == true)
{
swr.WriteLine(" </m5-3-2-1-plasma-protein-binding-study-reports>");
m5321open = false;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "532-rep-stud-pk-human-biomat" + Path.DirectorySeparatorChar + "5322-rep-hep-metab-interact-stud") && m5322open == false)
{
swr.WriteLine(" <m5-3-2-2-reports-of-hepatic-metabolism-and-drug-interaction-studies>");
m5322open = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "532-rep-stud-pk-human-biomat" + Path.DirectorySeparatorChar + "5322-rep-hep-metab-interact-stud"))
{
swr.WriteLine(" <leaf ID=\"m5-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.3.2.2 Reports of Hepatic Metabolism and Drug Interaction Studies</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "532-rep-stud-pk-human-biomat" + Path.DirectorySeparatorChar + "5322-rep-hep-metab-interact-stud") == false && m5322open == true)
{
swr.WriteLine(" </m5-3-2-2-reports-of-hepatic-metabolism-and-drug-interaction-studies>");
m5322open = false;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "532-rep-stud-pk-human-biomat" + Path.DirectorySeparatorChar + "5323-stud-other-human-biomat") && m5323open == false)
{
swr.WriteLine(" <m5-3-2-3-reports-of-studies-using-other-human-biomaterials>");
m5323open = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "532-rep-stud-pk-human-biomat" + Path.DirectorySeparatorChar + "5323-stud-other-human-biomat"))
{
swr.WriteLine(" <leaf ID=\"m5-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.3.2.3 Reports of Studies Using Other Human Biomaterials</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "532-rep-stud-pk-human-biomat" + Path.DirectorySeparatorChar + "5323-stud-other-human-biomat") == false && m5323open == true)
{
swr.WriteLine(" </m5-3-2-3-reports-of-studies-using-other-human-biomaterials>");
m5323open = false;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "532-rep-stud-pk-human-biomat") == false && m532open == true)
{
swr.WriteLine(" </m5-3-2-reports-of-studies-pertinent-to-pharmacokinetics-using-human-biomaterials>");
m532open = false;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "533-rep-human-pk-stud") && m533open == false)
{
swr.WriteLine(" <m5-3-3-reports-of-human-pharmacokinetics-pk-studies>");
m533open = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "533-rep-human-pk-stud")
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5331-healthy-subj-pk-init-tol-stud-rep") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5332-patient-pk-init-tol-stud-rep") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5333-intrin-factor-pk-stud-rep") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5334-extrin-factor-pk-stud-rep") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5335-popul-pk-stud-rep") == false)
{
swr.WriteLine(" <leaf ID=\"m5-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.3.3 Reports of Human Pharmacokinetic (PK) Studies</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "533-rep-human-pk-stud" + Path.DirectorySeparatorChar + "5331-healthy-subj-pk-init-tol-stud-rep") && m5331open == false)
{
swr.WriteLine(" <m5-3-3-1-healthy-subject-pk-and-initial-tolerability-study-reports>");
m5331open = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "533-rep-human-pk-stud" + Path.DirectorySeparatorChar + "5331-healthy-subj-pk-init-tol-stud-rep"))
{
swr.WriteLine(" <leaf ID=\"m5-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.3.3.1 Healthy Subject PK and Initial Tolerability Study Reports</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "533-rep-human-pk-stud" + Path.DirectorySeparatorChar + "5331-healthy-subj-pk-init-tol-stud-rep") == false && m5331open == true)
{
swr.WriteLine(" </m5-3-3-1-healthy-subject-pk-and-initial-tolerability-study-reports>");
m5331open = false;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "533-rep-human-pk-stud" + Path.DirectorySeparatorChar + "5332-patient-pk-init-tol-stud-rep") && m5332open == false)
{
swr.WriteLine(" <m5-3-3-2-patient-pk-and-initial-tolerability-study-reports>");
m5332open = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "533-rep-human-pk-stud" + Path.DirectorySeparatorChar + "5332-patient-pk-init-tol-stud-rep"))
{
swr.WriteLine(" <leaf ID=\"m5-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.3.3.2 Patient PK and Initial Tolerability Study Reports</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "533-rep-human-pk-stud" + Path.DirectorySeparatorChar + "5332-patient-pk-init-tol-stud-rep") == false && m5332open == true)
{
swr.WriteLine(" </m5-3-3-2-patient-pk-and-initial-tolerability-study-reports>");
m5332open = false;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "533-rep-human-pk-stud" + Path.DirectorySeparatorChar + "5333-intrin-factor-pk-stud-rep") && m5333open == false)
{
swr.WriteLine(" <m5-3-3-3-intrinsic-factor-pk-study-reports>");
m5333open = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "533-rep-human-pk-stud" + Path.DirectorySeparatorChar + "5333-intrin-factor-pk-stud-rep"))
{
swr.WriteLine(" <leaf ID=\"m5-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.3.3.3 Intrinsic Factor PK Study Reports</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "533-rep-human-pk-stud" + Path.DirectorySeparatorChar + "5333-intrin-factor-pk-stud-rep") == false && m5333open == true)
{
swr.WriteLine(" </m5-3-3-3-intrinsic-factor-pk-study-reports>");
m5333open = false;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "533-rep-human-pk-stud" + Path.DirectorySeparatorChar + "5334-extrin-factor-pk-stud-rep") && m5334open == false)
{
swr.WriteLine(" <m5-3-3-4-extrinsic-factor-pk-study-reports>");
m5334open = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "533-rep-human-pk-stud" + Path.DirectorySeparatorChar + "5334-extrin-factor-pk-stud-rep"))
{
swr.WriteLine(" <leaf ID=\"m5-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.3.3.4 Extrinsic Factor PK Study Reports</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "533-rep-human-pk-stud" + Path.DirectorySeparatorChar + "5334-extrin-factor-pk-stud-rep") == false && m5334open == true)
{
swr.WriteLine(" </m5-3-3-4-extrinsic-factor-pk-study-reports>");
m5334open = false;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "533-rep-human-pk-stud" + Path.DirectorySeparatorChar + "5335-popul-pk-stud-rep") && m5335open == false)
{
swr.WriteLine(" <m5-3-3-5-population-pk-study-reports>");
m5335open = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "533-rep-human-pk-stud" + Path.DirectorySeparatorChar + "5335-popul-pk-stud-rep"))
{
swr.WriteLine(" <leaf ID=\"m5-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.3.3.5 Population PK Study Reports</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "533-rep-human-pk-stud" + Path.DirectorySeparatorChar + "5335-popul-pk-stud-rep") == false && m5335open == true)
{
swr.WriteLine(" </m5-3-3-5-population-pk-study-reports>");
m5335open = false;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "533-rep-human-pk-stud") == false && m533open == true)
{
swr.WriteLine(" </m5-3-3-reports-of-human-pharmacokinetics-pk-studies>");
m533open = false;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "534-rep-human-pd-stud") && m534open == false)
{
swr.WriteLine(" <m5-3-4-reports-of-human-pharmacodynamics-pd-studies>");
m534open = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "534-rep-human-pd-stud")
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5341-healthy-subj-pd-stud-rep") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5342-patient-pd-stud-rep") == false)
{
swr.WriteLine(" <leaf ID=\"m5-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.3.4 Reports of Human Pharmacodynamic (PD) Studies</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "534-rep-human-pd-stud" + Path.DirectorySeparatorChar + "5341-healthy-subj-pd-stud-rep") && m5341open == false)
{
swr.WriteLine(" <m5-3-4-1-healthy-subject-pd-and-pk-pd-study-reports>");
m5341open = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "534-rep-human-pd-stud" + Path.DirectorySeparatorChar + "5341-healthy-subj-pd-stud-rep"))
{
swr.WriteLine(" <leaf ID=\"m5-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.3.4.1 Healthy Subject PD and PK/PD Study Reports</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "534-rep-human-pd-stud" + Path.DirectorySeparatorChar + "5341-healthy-subj-pd-stud-rep") == false && m5341open == true)
{
swr.WriteLine(" </m5-3-4-1-healthy-subject-pd-and-pk-pd-study-reports>");
m5341open = false;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "534-rep-human-pd-stud" + Path.DirectorySeparatorChar + "5342-patient-pd-stud-rep") && m5342open == false)
{
swr.WriteLine(" <m5-3-4-2-patient-pd-and-pk-pd-study-reports>");
m5342open = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "534-rep-human-pd-stud" + Path.DirectorySeparatorChar + "5342-patient-pd-stud-rep"))
{
swr.WriteLine(" <leaf ID=\"m5-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.3.4.2 Patient PD and PK/PD Study Reports</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "534-rep-human-pd-stud" + Path.DirectorySeparatorChar + "5342-patient-pd-stud-rep") == false && m5342open == true)
{
swr.WriteLine(" </m5-3-4-2-patient-pd-and-pk-pd-study-reports>");
m5342open = false;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "534-rep-human-pd-stud") == false && m534open == true)
{
swr.WriteLine(" </m5-3-4-reports-of-human-pharmacodynamics-pd-studies>");
m534open = false;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "535-rep-effic-safety-stud") && m535open == false)
{
charindex = filenameListArray[p, 0].IndexOf(Path.DirectorySeparatorChar+"535-rep-effic-safety-stud");
startposition = charindex + 27;
endposition = filenameListArray[p, 0].Length - startposition;
indication = filenameListArray[p, 0].Substring(startposition, endposition);
charindex = indication.IndexOf(Path.DirectorySeparatorChar);
indication = indication.Substring(0, charindex);
swr.WriteLine(" <m5-3-5-reports-of-efficacy-and-safety-studies indication=\"{0}\">", indication);
m535open = true;
}
if (filenameListArray[p, 0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "535-rep-effic-safety-stud") && m535open == true)
{
charindex = filenameListArray[p, 0].IndexOf(Path.DirectorySeparatorChar+"535-rep-effic-safety-stud");
startposition = charindex + 27;
endposition = filenameListArray[p, 0].Length - startposition;
indication1 = filenameListArray[p, 0].Substring(startposition, endposition);
charindex = indication1.IndexOf(Path.DirectorySeparatorChar);
indication1 = indication1.Substring(0, charindex);
if (string.Equals(indication, indication1) == false)
{
if (m5351open)
{
swr.WriteLine(" </m5-3-5-1-study-reports-of-controlled-clinical-studies-pertinent-to-the-claimed-indication>");
m5351open = false;
}
if (m5352open)
{
swr.WriteLine(" </m5-3-5-2-study-reports-of-uncontrolled-clinical-studies>");
m5352open = false;
}
if (m5353open)
{
swr.WriteLine(" </m5-3-5-3-reports-of-analyses-of-data-from-more-than-one-study>");
m5353open = false;
}
if (m5354open)
{
swr.WriteLine(" </m5-3-5-4-other-study-reports>");
m5354open = false;
}
swr.WriteLine(" </m5-3-5-reports-of-efficacy-and-safety-studies>");
swr.WriteLine(" <m5-3-5-reports-of-efficacy-and-safety-studies indication=\"{0}\">", indication1);
indication = indication1;
}
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "535-rep-effic-safety-stud")
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5351-stud-rep-contr") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5352-stud-rep-uncontr") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5353-rep-analys-data-more-one-stud") == false
&& filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5354-other-stud-rep") == false)
{
swr.WriteLine(" <leaf ID=\"m5-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.3.5 Reports of Efficacy and Safety Studies</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5351-stud-rep-contr") && m5351open == false)
{
swr.WriteLine(" <m5-3-5-1-study-reports-of-controlled-clinical-studies-pertinent-to-the-claimed-indication>");
m5351open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5351-stud-rep-contr"))
{
swr.WriteLine(" <leaf ID=\"m5-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.3.5.1 Study Reports of Controlled Clinical Studies Pertinent to the Claimed Indication</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5351-stud-rep-contr") == false && m5351open == true)
{
swr.WriteLine(" </m5-3-5-1-study-reports-of-controlled-clinical-studies-pertinent-to-the-claimed-indication>");
m5351open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5352-stud-rep-uncontr") && m5352open == false)
{
swr.WriteLine(" <m5-3-5-2-study-reports-of-uncontrolled-clinical-studies>");
m5352open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5352-stud-rep-uncontr"))
{
swr.WriteLine(" <leaf ID=\"m5-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.3.5.2 Study Reports of Uncontrolled Clinical Studies</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5352-stud-rep-uncontr") == false && m5352open == true)
{
swr.WriteLine(" </m5-3-5-2-study-reports-of-uncontrolled-clinical-studies>");
m5352open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5353-rep-analys-data-more-one-stud") && m5353open == false)
{
swr.WriteLine(" <m5-3-5-3-reports-of-analyses-of-data-from-more-than-one-study>");
m5353open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5353-rep-analys-data-more-one-stud"))
{
swr.WriteLine(" <leaf ID=\"m5-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.3.5.3 Reports of Analyses of Data from More than One Study</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5353-rep-analys-data-more-one-stud") == false && m5353open == true)
{
swr.WriteLine(" </m5-3-5-3-reports-of-analyses-of-data-from-more-than-one-study>");
m5353open = false;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5354-other-stud-rep") && m5354open == false)
{
swr.WriteLine(" <m5-3-5-4-other-study-reports>");
m5354open = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5354-other-stud-rep"))
{
swr.WriteLine(" <leaf ID=\"m5-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.3.5.4 Other Study Reports</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains(Path.DirectorySeparatorChar+"5354-other-stud-rep") == false && m5354open == true)
{
swr.WriteLine(" </m5-3-5-4-other-study-reports>");
m5354open = false;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "535-rep-effic-safety-stud") == false && m535open == true)
{
swr.WriteLine(" </m5-3-5-reports-of-efficacy-and-safety-studies>");
m535open = false;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "536-postmark-exp") && m536open == false)
{
swr.WriteLine(" <m5-3-6-reports-of-postmarketing-experience>");
m536open = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "536-postmark-exp"))
{
swr.WriteLine(" <leaf ID=\"m5-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.3.6 Reports of Postmarketing Experience</title>");
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "536-postmark-exp") == false && m536open == true)
{
swr.WriteLine(" </m5-3-6-reports-of-postmarketing-experience>");
m536open = false;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "537-crf-ipl") && m537open == false)
{
swr.WriteLine(" <m5-3-7-case-report-forms-and-individual-patient-listings>");
m537open = true;
idcounter = 1;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "537-crf-ipl"))
{
swr.WriteLine(" <leaf ID=\"m537-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.3.7 Case Report Forms and Individual Patient Listings - {0}</title>", idcounter.ToString());
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep" + Path.DirectorySeparatorChar + "537-crf-ipl") == false && m537open == true)
{
swr.WriteLine(" </m5-3-7-case-report-forms-and-individual-patient-listings>");
m537open = false;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "53-clin-stud-rep") == false && m53open == true)
{
swr.WriteLine(" </m5-3-clinical-study-reports>");
m53open = false;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "54-lit-ref") && m54open == false)
{
swr.WriteLine(" <m5-4-literature-references>");
m54open = true;
idcounter = 1;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "54-lit-ref"))
{
swr.WriteLine(" <leaf ID=\"m54-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
swr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
swr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
swr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
swr.WriteLine(" <title>5.4 Literature Reference - {0}</title>", filenameListArray[p, 0].Substring(filenameListArray[p, 0].LastIndexOf(Path.DirectorySeparatorChar) + 1, (filenameListArray[p, 0].Length - (filenameListArray[p, 0].LastIndexOf(Path.DirectorySeparatorChar) + 5))));
swr.WriteLine(" </leaf>");
idcounter++; indexed = true;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar + "54-lit-ref") == false && m54open == true)
{
swr.WriteLine(" </m5-4-literature-references>");
m54open = false;
}
if (filenameListArray[p,0].Contains("m5" + Path.DirectorySeparatorChar) == false && m5open == true)
{
swr.WriteLine(" </m5-clinical-study-reports>");
m5open = false;
}
if (indexed == false && filenameListArray[p, 0].Contains("m1" + Path.DirectorySeparatorChar + "eu") == false && filenameListArray[p, 0].Contains("util" + Path.DirectorySeparatorChar) == false)
{
unIndexed[n] = filenameListArray[p,1];
n++;
}
indexed = false;
}
//end of index.xml
swr.WriteLine("</ectd:ectd>");
swr.Close();
textBoxMD5.Text = xmlIndexOutput;
//call m2m5sort method in XMLsort class to order elements correctly
//i.e. change from alphabetical order to CTD, where these are different
XMLsort sortingHat = new XMLsort();
sortingHat.m2m5sort(xmlIndexOutput);
if (n > 0)
{
string finishedMessage = "Number of files (outside \"m1/eu\" and \"util\" folders) not indexed: " + n.ToString() + " List files?";
DialogResult resultUnindexed;
resultUnindexed = MessageBox.Show(xmlIndexOutput + "\n" + "\n" + finishedMessage, "indexing completed", MessageBoxButtons.YesNo);
if (resultUnindexed == DialogResult.Yes)
{
string listOfUnIndexed = "";
for (int m = 0; m <= n; m++)
{
listOfUnIndexed = listOfUnIndexed + unIndexed[m] + "\n";
}
MessageBox.Show(listOfUnIndexed);
}
}
DialogResult result;
result = MessageBox.Show(xmlIndexOutput + "\n Open file?", "Module 2-5 indexing completed", MessageBoxButtons.YesNo);
if (result == DialogResult.Yes)
{
System.Diagnostics.Process.Start(xmlIndexOutput);
}
}
catch (Exception g)
{
MessageBox.Show(g.ToString(), "The process failed");
}
}
//generates eu-regional.xml
private void button1_Click(object sender, EventArgs e)
{
//string variables for EU envelope
string submissionIdentifier = this.label9.Text;
string trackingNumber = textBoxTrackNo.Text;
string applicant = "";
string agency = "";
string inventedName = "";
string INN = textBoxINN.Text;
string submDescr = textBoxSubmDescr.Text;
string procType = comboBoxProcType.Text;
string submType = comboBoxSubmType.Text;
string m1euPath = textBoxSeqDir.Text + Path.DirectorySeparatorChar+"m1"+Path.DirectorySeparatorChar+"eu";
string country = "Common";
string language = "";
string m131identifier = "combined";
int m1euPathIndex = m1euPath.IndexOf(Path.DirectorySeparatorChar+"m1"+Path.DirectorySeparatorChar);
string sequence = m1euPath.Substring(m1euPathIndex - 4, 4);
//EU M1 v.3.0.1 spec.: "The related sequence number should always be stated. In case of activities with only one sequence the same sequence number will be used."
string relSeq = "";
if (textBoxRelSeq.Text == "") {
relSeq = m1euPath.Substring(m1euPathIndex - 4,4);
}
else {
relSeq = textBoxRelSeq.Text;
}
string envelopeCountry;
string appCountry; //used to determine country in 12-form
string sequencePath = textBoxSeqDir.Text;
string applicationMode = comboBoxMode.Text;
string appHighLevelNo = textBoxNumber.Text;
//generate new uuid if no uuid has been copied from a previous sequence (using the copy envelope button)
if (submissionIdentifier == ""){
submissionIdentifier = Guid.NewGuid ().ToString();
this.label9.Text = submissionIdentifier;
}
//path to save output eu-regional.xml file
string xmlOutput = m1euPath + Path.DirectorySeparatorChar+ "eu-regional.xml";
//variables for handling multiple child elements
bool m10open = false;
bool m12open = false;
bool m13open = false;
bool m131spcopen = false;
bool m132open = false;
bool m133open = false;
bool m134open = false;
bool m135open = false;
bool m14open = false;
bool m15open = false;
bool m16open = false;
bool m17open = false;
bool m18open = false;
bool m181open = false;
bool m1responsesopen = false;
bool m1additionalopen = false;
//integer counter for id values
int idcounter = 0;
//title of elements under Module 1.2, changes to use the path between "form-" and ".pdf" of path if the path contains "form-"
string formTitle = "Application form";
//count files in m1 folder
int m1FileNumber = FileCounter(m1euPath);
//count directories under m1/eu to determine size of dirListArrayM1
int arraySize = DirCounter(m1euPath);
string[] dirListArrayM1; //array filled with directory and file names
dirListArrayM1 = new string[arraySize];
//initialise the array "initialArrayM1"
for (int i = 0; i < dirListArrayM1.Length; i++)
{
dirListArrayM1[i] = "0";
}
//pass root directory to dirLister
directories dir = new directories();
dirListArrayM1 = dir.dirLister(m1euPath, 0, dirListArrayM1);
//create a filename array for sorting - workaround for sorting multidimensional array filenameListArray
//filenameListArray holds filenames, relative path to files, md5s, operation attributes and modified file id information
string[] filenameSortArray;
filenameSortArray = new string[m1FileNumber];
int counterY = 0;
for (int q = 1; q < dirListArrayM1.Length; q++)
{
DirectoryInfo allDirs = new DirectoryInfo(dirListArrayM1[q]);
foreach (FileInfo f in allDirs.GetFiles())
{
filenameSortArray[counterY] = f.FullName;
counterY++;
}
}
Array.Sort(filenameSortArray);
string[,] filenameListArray;
filenameListArray = new string[m1FileNumber, 5];
int counterX = 0;
for (int p = 0; p < m1FileNumber; p++)
{
FileInfo f = new FileInfo(filenameSortArray[p]);
string name = f.FullName;
int index = name.IndexOf("m1" + Path.DirectorySeparatorChar + "eu" + Path.DirectorySeparatorChar);
string shortname = name.Substring(index + 6);
shortname = shortname.Replace("\\", "/");
MD5Calculator checksum = new MD5Calculator();
string sum = checksum.ComputeMD5Checksum(f.FullName);
string modifiedFileID = "";
string operation = "new";
//Lifecycle operations, replace, append and delete
if (name.Contains("replace("))
{
string prevSequence = sequencePath.Substring(0, sequencePath.Length - 4) + name.Substring(name.IndexOf("(") + 1, 4) + Path.DirectorySeparatorChar+"m1"+Path.DirectorySeparatorChar+"eu"+Path.DirectorySeparatorChar+"eu-regional.xml";
string prevLeafPath = shortname.Substring(0, shortname.IndexOf("replace")) + shortname.Substring(shortname.IndexOf(")") + 1, shortname.Length - (shortname.IndexOf(")") + 1));
XMLsort repDelID = new XMLsort();
modifiedFileID = "../../../" + name.Substring(name.IndexOf("(") + 1, 4) + "/m1/eu/eu-regional.xml#" + repDelID.modifiedFile(prevSequence, prevLeafPath);
operation = "replace";
//rename file to remove the replace pointer
string newFileName = f.FullName.Substring(0, f.FullName.IndexOf("replace")) + f.FullName.Substring(f.FullName.IndexOf(")") + 1, f.FullName.Length - (f.FullName.IndexOf(")") + 1));
File.Move(f.FullName, newFileName);
name = newFileName;
index = name.IndexOf(sequence);
shortname = name.Substring(index + 11);
shortname = shortname.Replace("\\", "/");
}
if (name.Contains("append("))
{
string prevSequence = sequencePath.Substring(0, sequencePath.Length - 4) + name.Substring(name.IndexOf("(") + 1, 4) + Path.DirectorySeparatorChar+"m1"+Path.DirectorySeparatorChar+"eu"+Path.DirectorySeparatorChar+"eu-regional.xml";
string prevLeafPath = shortname.Substring(0, shortname.IndexOf("append")) + shortname.Substring(shortname.IndexOf(")") + 1, shortname.Length - (shortname.IndexOf(")") + 1));
XMLsort repDelID = new XMLsort();
modifiedFileID = "../../../" + name.Substring(name.IndexOf("(") + 1, 4) + "/m1/eu/eu-regional.xml#" + repDelID.modifiedFile(prevSequence, prevLeafPath);
operation = "append";
//rename file to remove the replace pointer
string newFileName = f.FullName.Substring(0, f.FullName.IndexOf("append")) + f.FullName.Substring(f.FullName.IndexOf(")") + 1, f.FullName.Length - (f.FullName.IndexOf(")") + 1));
File.Move(f.FullName, newFileName);
name = newFileName;
index = name.IndexOf(sequence);
shortname = name.Substring(index + 11);
shortname = shortname.Replace("\\", "/");
}
if (name.Contains("delete("))
{
string prevSequence = sequencePath.Substring(0, sequencePath.Length - 4) + name.Substring(name.IndexOf("(") + 1, 4) + Path.DirectorySeparatorChar + "m1" + Path.DirectorySeparatorChar + "eu" + Path.DirectorySeparatorChar + "eu-regional.xml";
string prevLeafPath = shortname.Substring(0, shortname.IndexOf("delete")) + shortname.Substring(shortname.IndexOf(")") + 1, shortname.Length - (shortname.IndexOf(")") + 1));
XMLsort repDelID = new XMLsort();
//string newFileName = f.FullName.Substring(0, f.FullName.IndexOf("delete")) + f.FullName.Substring(f.FullName.IndexOf(")") + 1, f.FullName.Length - (f.FullName.IndexOf(")") + 1));
//name = newFileName;
modifiedFileID = "../../../" + name.Substring(name.IndexOf("(") + 1, 4) + "/m1/eu/eu-regional.xml#" + repDelID.modifiedFile(prevSequence, prevLeafPath);
operation = "delete";
shortname = "";
sum = "";
File.Delete(f.FullName);
}
filenameListArray[counterX, 0] = name;
filenameListArray[counterX, 1] = shortname;
filenameListArray[counterX, 2] = sum;
filenameListArray[counterX, 3] = operation;
filenameListArray[counterX, 4] = modifiedFileID;
counterX++;
}
try
{
StreamWriter sr = File.CreateText(xmlOutput);
DateTime dt = DateTime.Now;
//start of XML file - EU envelope
sr.WriteLine("<?xml version=\"1.0\" encoding=\"UTF-8\"?>");
sr.WriteLine("<!DOCTYPE eu:eu-backbone SYSTEM \"../../util/dtd/eu-regional.dtd\">");
sr.WriteLine("<?xml-stylesheet type=\"text/xsl\" href=\"../../util/style/eu-regional.xsl\"?>");
sr.WriteLine("<!-- Generated {0} using eCTD indexer - http://ectd.is -->", dt.ToString());
sr.WriteLine("<eu:eu-backbone xmlns:eu=\"http://europa.eu.int\"");
sr.WriteLine(" xmlns:xlink=\"http://www.w3c.org/1999/xlink\"");
sr.WriteLine(" xml:lang=\"en\" dtd-version=\"3.0.1\">");
sr.WriteLine(" <eu-envelope>");
foreach (Control control in this.Controls)
{
if (control is CheckBox)
{
if (((CheckBox)control).Checked == true)
{
if (((CheckBox)control).Tag.ToString() == "EMA")
{
envelopeCountry = "EMA";
}
if (((CheckBox)control).Tag.ToString() == "EDQM")
{
envelopeCountry = "EDQM";
}
else
{
envelopeCountry = (((CheckBox)control).Tag.ToString().Substring(0, 2));
}
agency = (((CheckBox)control).Text.ToString());
foreach (Control control2 in this.Controls)
{
if ((control2 is TextBox) && ((((TextBox)control2).Tag) == (((CheckBox)control).Tag)))
{
if ((((TextBox)control2).Name) == ("textBox" + (((TextBox)control2).Tag) + "App"))
{
applicant = (((TextBox)control2).Text);
}
else
{
inventedName = (((TextBox)control2).Text);
}
}
}
sr.WriteLine(" <envelope country=\"{0}\">", envelopeCountry.ToLower());
sr.WriteLine(" <identifier>{0}</identifier>", submissionIdentifier);
if (comboBoxMode.Enabled == true)
{
sr.WriteLine(" <submission type=\"{0}\" mode=\"{1}\">", submType, applicationMode);
}
else
{
sr.WriteLine(" <submission type=\"{0}\">", submType);
}
if (appHighLevelNo != null && textBoxNumber.Enabled == true)
{
sr.WriteLine(" <number>{0}</number>", appHighLevelNo);
}
sr.WriteLine(" <procedure-tracking>");
sr.WriteLine(" <number>{0}</number>", trackingNumber);
sr.WriteLine(" </procedure-tracking>");
sr.WriteLine(" </submission>");
sr.WriteLine(" <submission-unit type=\"{0}\"/>", comboBoxSubmUnit.Text);
sr.WriteLine(" <applicant>{0}</applicant>", applicant);
sr.WriteLine(" <agency code=\"{0}\"/>", agency);
sr.WriteLine(" <procedure type=\"{0}\"/>", procType);
sr.WriteLine(" <invented-name>{0}</invented-name>", inventedName);
sr.WriteLine(" <inn>{0}</inn>", INN);
sr.WriteLine(" <sequence>{0}</sequence>", sequence);
sr.WriteLine(" <related-sequence>{0}</related-sequence>", relSeq);
sr.WriteLine(" <submission-description>{0}</submission-description>", submDescr);
sr.WriteLine(" </envelope>");
}
}
}
sr.WriteLine(" </eu-envelope>");
// start of EU Module 1
sr.WriteLine(" <m1-eu>");
//leaf generator
for (int p = 0; p < m1FileNumber; p++)
{
List<string> filePathList = new List<string>(filenameListArray[p, 0].Split(Path.DirectorySeparatorChar));
if (filenameListArray[p,0].Contains("10-cover") && m10open == false)
{
sr.WriteLine(" <m1-0-cover>");
m10open = true;
}
if (filenameListArray[p,0].Contains("10-cover"))
{
if (filenameListArray[p, 0].Contains("common")) country = "common";
else country = filePathList[filePathList.IndexOf("10-cover")+1];
sr.WriteLine(" <specific country=\"{0}\">", country);
sr.WriteLine(" <leaf ID=\"m10-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
sr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
sr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
sr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
if (filenameListArray[p,0].Contains("-tracking"))
{
sr.WriteLine(" <title>Tracking table</title>");
}
else
{
sr.WriteLine(" <title>Cover Letter</title>");
}
sr.WriteLine(" </leaf>");
sr.WriteLine(" </specific>");
idcounter++;
}
if (filenameListArray[p,0].Contains("10-cover") == false && m10open == true)
{
sr.WriteLine(" </m1-0-cover>");
m10open = false;
idcounter = 0;
}
if (filenameListArray[p,0].Contains("12-form") && m12open == false)
{
sr.WriteLine(" <m1-2-form>");
m12open = true;
}
if (filenameListArray[p,0].Contains("12-form"))
{
if (filenameListArray[p,0].Contains("common")) appCountry = "common";
else appCountry = filePathList[filePathList.IndexOf("12-form")+1];
if (filenameListArray[p,0].Contains("form-"))
{
int formNameStart = filenameListArray[p,0].IndexOf("form-") + 5;
int formNameLength = (filenameListArray[p,0].IndexOf(".") - formNameStart);
formTitle = ("Application - " + filenameListArray[p,0].Substring(formNameStart, formNameLength));
}
else formTitle = "Application form";
sr.WriteLine(" <specific country=\"{0}\">", appCountry);
sr.WriteLine(" <leaf ID=\"m12-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
sr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
sr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
sr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
sr.WriteLine(" <title>{0}</title>", formTitle);
sr.WriteLine(" </leaf>");
sr.WriteLine(" </specific>");
idcounter++;
}
if (filenameListArray[p,0].Contains("12-form") == false && m12open == true)
{
sr.WriteLine(" </m1-2-form>");
m12open = false;
idcounter = 0;
}
if (filenameListArray[p,0].Contains("13-pi") && m13open == false)
{
sr.WriteLine(" <m1-3-pi>");
m13open = true;
}
if (filenameListArray[p,0].Contains("131-spclabelpl") && m131spcopen == false)
{
sr.WriteLine(" <m1-3-1-spc-label-pl>");
m131spcopen = true;
}
if (filenameListArray[p,0].Contains("131-spclabelpl"))
{
country = filePathList[filePathList.IndexOf("131-spclabelpl") + 1];
language = filePathList[filePathList.IndexOf("131-spclabelpl") + 2];
if (filenameListArray[p,0].Contains("-spc.") || filenameListArray[p,0].Contains("-spc-")) m131identifier = "spc";
if (filenameListArray[p,0].Contains("-annex2")) m131identifier = "annex2";
if (filenameListArray[p,0].Contains("-outer")) m131identifier = "outer";
if (filenameListArray[p,0].Contains("-interpack")) m131identifier = "interpack";
if (filenameListArray[p,0].Contains("-impack")) m131identifier = "impack";
if (filenameListArray[p,0].Contains("-other")) m131identifier = "other";
if (filenameListArray[p,0].Contains("-pl")) m131identifier = "pl";
sr.WriteLine(" <pi-doc type=\"{0}\" xml:lang=\"{1}\" country=\"{2}\">", m131identifier, language, country);
sr.WriteLine(" <leaf ID=\"m131-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
sr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
sr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
sr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
sr.WriteLine(" <title>{0}</title>", m131identifier);
sr.WriteLine(" </leaf>");
sr.WriteLine(" </pi-doc>");
idcounter++;
m131identifier = "";
}
if (filenameListArray[p,0].Contains("131-spclabelpl") == false && m131spcopen == true)
{
sr.WriteLine(" </m1-3-1-spc-label-pl>");
m131spcopen = false;
idcounter = 0;
}
if (filenameListArray[p,0].Contains("132-mockup") && m132open == false)
{
sr.WriteLine(" <m1-3-2-mockup>");
m132open = true;
}
if (filenameListArray[p,0].Contains("132-mockup"))
{
int mockupNameFinder = filenameListArray[p,0].IndexOf("mockup-") + 7;
int mockupNameLength = (filenameListArray[p,0].Length - mockupNameFinder) -4;
string mockupTitle = filenameListArray[p,0].Substring(mockupNameFinder, mockupNameLength);
country = filePathList[filePathList.IndexOf("132-mockup")+1];
sr.WriteLine(" <specific country=\"{0}\">", country);
sr.WriteLine(" <leaf ID=\"m132-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
sr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
sr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
sr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
sr.WriteLine(" <title>Mock-up {0}</title>", mockupTitle);
sr.WriteLine(" </leaf>");
sr.WriteLine(" </specific>");
idcounter++;
}
if (filenameListArray[p,0].Contains("132-mockup") == false && m132open == true)
{
sr.WriteLine(" </m1-3-2-mockup>");
m132open = false;
idcounter = 0;
}
if (filenameListArray[p,0].Contains("133-specimen") && m133open == false)
{
sr.WriteLine(" <m1-3-3-specimen>");
m133open = true;
}
if (filenameListArray[p,0].Contains("133-specimen"))
{
country = filePathList[filePathList.IndexOf("133-specimen") + 1];
sr.WriteLine(" <specific country=\"{0}\">", country);
sr.WriteLine(" <leaf ID=\"m133-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
sr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
sr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
sr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
sr.WriteLine(" <title>Specimen</title>");
sr.WriteLine(" </leaf>");
sr.WriteLine(" </specific>");
idcounter++;
}
if (filenameListArray[p,0].Contains("133-specimen") == false && m133open == true)
{
sr.WriteLine(" </m1-3-3-specimen>");
m133open = false;
idcounter = 0;
}
if (filenameListArray[p,0].Contains("134-consultation") && m134open == false)
{
sr.WriteLine(" <m1-3-4-consultation>");
m134open = true;
}
if (filenameListArray[p,0].Contains("134-consultation"))
{
country = filePathList[filePathList.IndexOf("134-consultation") + 1];
sr.WriteLine(" <specific country=\"{0}\">", country);
sr.WriteLine(" <leaf ID=\"m134-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
sr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
sr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
sr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
sr.WriteLine(" <title>Consultation with Target Patient Groups</title>");
sr.WriteLine(" </leaf>");
sr.WriteLine(" </specific>");
idcounter++;
}
if (filenameListArray[p,0].Contains("134-consultation") == false && m134open == true)
{
sr.WriteLine(" </m1-3-4-consultation>");
m134open = false;
idcounter = 0;
}
if (filenameListArray[p,0].Contains("135-approved") && m135open == false)
{
sr.WriteLine(" <m1-3-5-approved>");
m135open = true;
}
if (filenameListArray[p,0].Contains("135-approved"))
{
country = filePathList[filePathList.IndexOf("135-approved") + 1];
sr.WriteLine(" <specific country=\"{0}\">", country);
sr.WriteLine(" <leaf ID=\"m135-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
sr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
sr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
sr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
sr.WriteLine(" <title>Product Information already approved in the Member States</title>");
sr.WriteLine(" </leaf>");
sr.WriteLine(" </specific>");
idcounter++;
}
if (filenameListArray[p,0].Contains("135-approved") == false && m135open == true)
{
sr.WriteLine(" </m1-3-5-approved>");
m135open = false;
idcounter = 0;
}
if (filenameListArray[p,0].Contains("136-braille"))
{
sr.WriteLine(" <m1-3-6-braille>");
sr.WriteLine(" <leaf ID=\"m136\" operation=\"{0}\" checksum-type=\"md5\"", filenameListArray[p,3]);
sr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
sr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
sr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
sr.WriteLine(" <title>Braille</title>");
sr.WriteLine(" </leaf>");
sr.WriteLine(" </m1-3-6-braille>");
}
if (filenameListArray[p,0].Contains("13-pi") == false && m13open == true)
{
sr.WriteLine(" </m1-3-pi>");
m13open = false;
}
if (filenameListArray[p,0].Contains("14-expert") && m14open == false)
{
sr.WriteLine(" <m1-4-expert>");
m14open = true;
}
if (filenameListArray[p,0].Contains("141-quality"))
{
sr.WriteLine(" <m1-4-1-quality>");
sr.WriteLine(" <leaf ID=\"m141\" operation=\"{0}\" checksum-type=\"md5\"", filenameListArray[p,3]);
sr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
sr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
sr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
sr.WriteLine(" <title>Quality</title>");
sr.WriteLine(" </leaf>");
sr.WriteLine(" </m1-4-1-quality>");
}
if (filenameListArray[p,0].Contains("142-nonclinical"))
{
sr.WriteLine(" <m1-4-2-non-clinical>");
sr.WriteLine(" <leaf ID=\"m142\" operation=\"{0}\" checksum-type=\"md5\"", filenameListArray[p,3]);
sr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
sr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
sr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
sr.WriteLine(" <title>Non-Clinical</title>");
sr.WriteLine(" </leaf>");
sr.WriteLine(" </m1-4-2-non-clinical>");
}
if (filenameListArray[p,0].Contains("143-clinical"))
{
sr.WriteLine(" <m1-4-3-clinical>");
sr.WriteLine(" <leaf ID=\"m143\" operation=\"{0}\" checksum-type=\"md5\"", filenameListArray[p,3]);
sr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
sr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
sr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
sr.WriteLine(" <title>Clinical</title>");
sr.WriteLine(" </leaf>");
sr.WriteLine(" </m1-4-3-clinical>");
}
if (filenameListArray[p,0].Contains("14-expert") == false && m14open == true)
{
sr.WriteLine(" </m1-4-expert>");
m14open = false;
}
if (filenameListArray[p,0].Contains("15-specific") && m15open == false)
{
sr.WriteLine(" <m1-5-specific>");
m15open = true;
}
if (filenameListArray[p,0].Contains("151-bibliographic"))
{
sr.WriteLine(" <m1-5-1-bibliographic>");
sr.WriteLine(" <leaf ID=\"m151\" operation=\"{0}\" checksum-type=\"md5\"", filenameListArray[p,3]);
sr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
sr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
sr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
sr.WriteLine(" <title>Information for Bibliographical Applications</title>");
sr.WriteLine(" </leaf>");
sr.WriteLine(" </m1-5-1-bibliographic>");
}
if (filenameListArray[p,0].Contains("152-generic-hybrid-bio-similar"))
{
sr.WriteLine(" <m1-5-2-generic-hybrid-bio-similar>");
sr.WriteLine(" <leaf ID=\"m152\" operation=\"{0}\" checksum-type=\"md5\"", filenameListArray[p,3]);
sr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
sr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
sr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
sr.WriteLine(" <title>Information for Generic, �Hybrid� or Bio-similar Applications</title>");
sr.WriteLine(" </leaf>");
sr.WriteLine(" </m1-5-2-generic-hybrid-bio-similar>");
}
if (filenameListArray[p,0].Contains("153-data-market-exclusivity"))
{
sr.WriteLine(" <m1-5-3-data-market-exclusivity>");
sr.WriteLine(" <leaf ID=\"m153\" operation=\"{0}\" checksum-type=\"md5\"", filenameListArray[p,3]);
sr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
sr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
sr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
sr.WriteLine(" <title>(Extended) Data/Market Exclusivity</title>");
sr.WriteLine(" </leaf>");
sr.WriteLine(" </m1-5-3-data-market-exclusivity>");
}
if (filenameListArray[p,0].Contains("154-exceptional"))
{
sr.WriteLine(" <m1-5-4-exceptional-circumstances>");
sr.WriteLine(" <leaf ID=\"m154\" operation=\"{0}\" checksum-type=\"md5\"", filenameListArray[p,3]);
sr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
sr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
sr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
sr.WriteLine(" <title>Exceptional Circumstances</title>");
sr.WriteLine(" </leaf>");
sr.WriteLine(" </m1-5-4-exceptional-circumstances>");
}
if (filenameListArray[p,0].Contains("155-conditional-ma"))
{
sr.WriteLine(" <m1-5-5-conditional-ma>");
sr.WriteLine(" <leaf ID=\"m155\" operation=\"{0}\" checksum-type=\"md5\"", filenameListArray[p,3]);
sr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
sr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
sr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
sr.WriteLine(" <title>Conditional Marketing Authorisation</title>");
sr.WriteLine(" </leaf>");
sr.WriteLine(" </m1-5-5-conditional-ma>");
}
if (filenameListArray[p,0].Contains("15-specific") == false && m15open == true)
{
sr.WriteLine(" </m1-5-specific>");
m15open = false;
}
if (filenameListArray[p,0].Contains("16-environrisk") && m16open == false)
{
sr.WriteLine(" <m1-6-environrisk>");
m16open = true;
}
if (filenameListArray[p,0].Contains("161-nongmo"))
{
sr.WriteLine(" <m1-6-1-non-gmo>");
sr.WriteLine(" <leaf ID=\"m161nongmo\" operation=\"{0}\" checksum-type=\"md5\"", filenameListArray[p,3]);
sr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
sr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
sr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
sr.WriteLine(" <title>Non-GMO</title>");
sr.WriteLine(" </leaf>");
sr.WriteLine(" </m1-6-1-non-gmo>");
}
if (filenameListArray[p,0].Contains("162-gmo"))
{
sr.WriteLine(" <m1-6-2-gmo>");
sr.WriteLine(" <leaf ID=\"m161gmo\" operation=\"{0}\" checksum-type=\"md5\"", filenameListArray[p,3]);
sr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
sr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
sr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
sr.WriteLine(" <title>GMO</title>");
sr.WriteLine(" </leaf>");
sr.WriteLine(" </m1-6-2-gmo>");
}
if (filenameListArray[p,0].Contains("16-environrisk") == false && m16open == true)
{
sr.WriteLine(" </m1-6-environrisk>");
m16open = false;
}
if (filenameListArray[p,0].Contains("17-orphan") && m17open == false)
{
sr.WriteLine(" <m1-7-orphan>");
m17open = true;
}
if (filenameListArray[p,0].Contains("171-similarity"))
{
sr.WriteLine(" <m1-7-1-similarity>");
sr.WriteLine(" <leaf ID=\"m171\" operation=\"{0}\" checksum-type=\"md5\"", filenameListArray[p,3]);
sr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
sr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
sr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
sr.WriteLine(" <title>Similarity</title>");
sr.WriteLine(" </leaf>");
sr.WriteLine(" </m1-7-1-similarity>");
}
if (filenameListArray[p,0].Contains("172-market-exclusivity"))
{
sr.WriteLine(" <m1-7-2-market-exclusivity>");
sr.WriteLine(" <leaf ID=\"m172\" operation=\"{0}\" checksum-type=\"md5\"", filenameListArray[p,3]);
sr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
sr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
sr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
sr.WriteLine(" <title>Market Exclusivity</title>");
sr.WriteLine(" </leaf>");
sr.WriteLine(" </m1-7-2-market-exclusivity>");
}
if (filenameListArray[p,0].Contains("17-orphan") == false && m17open == true)
{
sr.WriteLine(" </m1-7-orphan>");
m17open = false;
}
if (filenameListArray[p,0].Contains("18-pharmacovigilance") && m18open == false)
{
sr.WriteLine(" <m1-8-pharmacovigilance>");
m18open = true;
}
if (filenameListArray[p,0].Contains("181-phvig-system") && m181open == false)
{
sr.WriteLine(" <m1-8-1-pharmacovigilance-system>");
m181open = true;
}
if (filenameListArray[p,0].Contains("181-phvig-system"))
{
sr.WriteLine(" <leaf ID=\"m18-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
sr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
sr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
sr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
sr.WriteLine(" <title>Pharmacovigilance System</title>");
sr.WriteLine(" </leaf>");
idcounter++;
}
if (filenameListArray[p,0].Contains("181-phvig-system") == false && m181open == true)
{
sr.WriteLine(" </m1-8-1-pharmacovigilance-system>");
m181open = false;
}
if (filenameListArray[p,0].Contains("182-riskmgt-system"))
{
sr.WriteLine(" <m1-8-2-risk-management-system>");
sr.WriteLine(" <leaf ID=\"m18-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
sr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
sr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
sr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
sr.WriteLine(" <title>Risk-management System</title>");
sr.WriteLine(" </leaf>");
sr.WriteLine(" </m1-8-2-risk-management-system>");
idcounter++;
}
if (filenameListArray[p,0].Contains("18-pharmacovigilance") == false && m18open == true)
{
sr.WriteLine(" </m1-8-pharmacovigilance>");
m18open = false;
idcounter = 0;
}
if (filenameListArray[p,0].Contains("19-clinical-trials"))
{
sr.WriteLine(" <m1-9-clinical-trials>");
sr.WriteLine(" <leaf ID=\"m19\" operation=\"{0}\" checksum-type=\"md5\"", filenameListArray[p,3]);
sr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
sr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
sr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
sr.WriteLine(" <title>Information relating to Clinical Trials</title>");
sr.WriteLine(" </leaf>");
sr.WriteLine(" </m1-9-clinical-trials>");
}
if (filenameListArray[p,0].Contains("110-paediatrics"))
{
sr.WriteLine(" <m1-10-paediatrics>");
sr.WriteLine(" <leaf ID=\"m110\" operation=\"{0}\" checksum-type=\"md5\"", filenameListArray[p,3]);
sr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
sr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
sr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
sr.WriteLine(" <title>Information relating to Paediatrics</title>");
sr.WriteLine(" </leaf>");
sr.WriteLine(" </m1-10-paediatrics>");
}
if (filenameListArray[p,0].Contains("additional-data") && m1additionalopen == false)
{
sr.WriteLine(" <m1-additional-data>");
m1additionalopen = true;
}
if (filenameListArray[p,0].Contains("additional-data"))
{
country = filePathList[filePathList.IndexOf("additional-data") + 1];
sr.WriteLine(" <specific country=\"{0}\">", country);
sr.WriteLine(" <leaf ID=\"m1add-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
sr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
sr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
sr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
sr.WriteLine(" <title>Additional Data</title>");
sr.WriteLine(" </leaf>");
sr.WriteLine(" </specific>");
idcounter++;
}
if (filenameListArray[p,0].Contains("additional-data") == false && m1additionalopen == true)
{
sr.WriteLine(" </m1-additional-data>");
m1additionalopen = false;
idcounter = 0;
}
if (filenameListArray[p,0].Contains("eu"+Path.DirectorySeparatorChar+"responses") && m1responsesopen == false)
{
sr.WriteLine(" <m1-responses>");
m1responsesopen = true;
}
if (filenameListArray[p, 0].Contains("eu" + Path.DirectorySeparatorChar + "responses"))
{
country = filePathList[filePathList.IndexOf("responses") + 1];
sr.WriteLine(" <specific country=\"{0}\">", country);
sr.WriteLine(" <leaf ID=\"m1res-{0}\" operation=\"{1}\" checksum-type=\"md5\"", idcounter, filenameListArray[p,3]);
sr.WriteLine(" checksum=\"{0}\"", filenameListArray[p,2]);
sr.WriteLine(" modified-file=\"{0}\"", filenameListArray[p,4]);
sr.WriteLine(" xlink:href=\"{0}\">", filenameListArray[p,1]);
sr.WriteLine(" <title>Responses to Questions</title>");
sr.WriteLine(" </leaf>");
sr.WriteLine(" </specific>");
idcounter++;
}
if (filenameListArray[p, 0].Contains("eu" + Path.DirectorySeparatorChar + "responses") == false && m1responsesopen == true)
{
sr.WriteLine(" </m1-responses>");
m1responsesopen = false;
idcounter = 0;
}
}
//end of XML file
if (m10open == true) sr.WriteLine(" </m1-0-cover>");
if (m12open == true) sr.WriteLine(" </m1-2-form>");
if (m131spcopen == true) sr.WriteLine(" </m1-3-1-spc-label-pl>");
if (m132open == true) sr.WriteLine(" </m1-3-2-mockup>");
if (m133open == true) sr.WriteLine(" </m1-3-3-specimen>");
if (m134open == true) sr.WriteLine(" </m1-3-4-consultation>");
if (m135open == true) sr.WriteLine(" </m1-3-5-approved>");
if (m13open == true) sr.WriteLine(" </m1-3-pi>");
if (m14open == true) sr.WriteLine(" </m1-4-expert>");
if (m15open == true) sr.WriteLine(" </m1-5-specific>");
if (m16open == true) sr.WriteLine(" </m1-6-environrisk>");
if (m17open == true) sr.WriteLine(" </m1-7-orphan>");
if (m181open == true) sr.WriteLine(" </m1-8-1-pharmacovigilance-system>");
if (m18open == true) sr.WriteLine(" </m1-8-pharmacovigilance>");
if (m1additionalopen == true) sr.WriteLine(" </m1-additional-data>");
if (m1responsesopen == true) sr.WriteLine(" </m1-responses>");
sr.WriteLine(" </m1-eu>");
sr.WriteLine("</eu:eu-backbone>");
sr.Close();
textBoxMD5.Text = xmlOutput;
//call m1sort method in XMLsort class to put Module 1.10 paediatrics in its right place
XMLsort sortingHat = new XMLsort();
sortingHat.m1sort(xmlOutput);
DialogResult resultm1;
resultm1 = MessageBox.Show(xmlOutput + "\n Open file?", "Module 1 indexing completed", MessageBoxButtons.YesNo);
if (resultm1 == DialogResult.Yes)
{
System.Diagnostics.Process.Start(xmlOutput);
}
}
catch (Exception f)
{
MessageBox.Show(f.ToString(), "The indexing process failed");
}
}