static public KmerProperties GetInstance()
{
if (Singleton == null)
{
Singleton = new KmerProperties();
Singleton.Init();
}
return(Singleton);
}
public static Set <char> PropertyNameToAASet(string propertyName)
{
KmerProperties kmerProperties = KmerProperties.GetInstance();
int propertyNum = kmerProperties.PropertyToNumber[propertyName];
Set <char> aaSet = Set <char> .GetInstance();
foreach (KeyValuePair <string, bool[]> aaAndBits in kmerProperties.AABits)
{
if (aaAndBits.Value[propertyNum])
{
char aa = Biology.GetInstance().ThreeLetterAminoAcidAbbrevTo1Letter[aaAndBits.Key];
aaSet.AddNew(aa);
}
}
return(aaSet);
}
public static Dictionary <string, List <string> > CreateAAToPropList()
{
Dictionary <string, List <string> > aaToPropList = new Dictionary <string, List <string> >();
foreach (string aa in Biology.GetInstance().AminoAcidCollection.Keys)
{
if (aa == "STOP" || aa == "DELETE")
{
continue;
}
bool[] rgsBit = KmerProperties.GetInstance().AABits[aa];
List <string> probList = new List <string>();
for (int iProperty = 0; iProperty < rgsBit.Length; ++iProperty)
{
if (rgsBit[iProperty])
{
string property = KmerProperties.GetInstance().AAPropertyCollection[iProperty];
probList.Add(property);
}
}
aaToPropList.Add(aa, probList);
}
return(aaToPropList);
}