C# (CSharp) VirusCount.Qmr OptimizationParameterList.ContainsKey Exemples

Exemple #1

        static public ModelLikelihoodFactories GetInstanceTwoCausePriors(OptimizationParameterList qmrrParams, string dataset)
        {
            SpecialFunctions.CheckCondition(qmrrParams.Count == 5);
            SpecialFunctions.CheckCondition(qmrrParams.ContainsKey("causePrior"));
            SpecialFunctions.CheckCondition(qmrrParams.ContainsKey("fitFactor"));
            SpecialFunctions.CheckCondition(qmrrParams.ContainsKey("link"));
            SpecialFunctions.CheckCondition(qmrrParams.ContainsKey("leakProbability"));
            SpecialFunctions.CheckCondition(qmrrParams.ContainsKey("useKnownList"));
            SpecialFunctions.CheckCondition(!qmrrParams["useKnownList"].DoSearch);
            SpecialFunctions.CheckCondition(qmrrParams["useKnownList"].Value == 0.0 || qmrrParams["useKnownList"].Value == 1.0);

            TwoCausePriors aTwoCausePriors = new TwoCausePriors();

            aTwoCausePriors.SetPeptideToFitUniverse(dataset);
            return(aTwoCausePriors);
        }

Exemple #2

        static public ModelLikelihoodFactories GetInstanceThreeParamSlow(OptimizationParameterList qmrrParams)
        {
            SpecialFunctions.CheckCondition(qmrrParams.Count == 4);
            SpecialFunctions.CheckCondition(qmrrParams.ContainsKey("causePrior"));
            SpecialFunctions.CheckCondition(qmrrParams.ContainsKey("link"));
            SpecialFunctions.CheckCondition(qmrrParams.ContainsKey("leakProbability"));

            SpecialFunctions.CheckCondition(qmrrParams.ContainsKey("useKnownList"));
            SpecialFunctions.CheckCondition(!qmrrParams["useKnownList"].DoSearch);
            SpecialFunctions.CheckCondition(qmrrParams["useKnownList"].Value == 0.0 || qmrrParams["useKnownList"].Value == 1.0);


            ThreeParamSlow aThreeParamSlow = new ThreeParamSlow();

            return(aThreeParamSlow);
        }

Exemple #3

        internal static ModelLikelihoodFactories GetInstanceLinkPerHla(OptimizationParameterList qmrrParams, Set <Hla> candidateHlaSet)
        {
            SpecialFunctions.CheckCondition(qmrrParams.Count == 3 + candidateHlaSet.Count);
            SpecialFunctions.CheckCondition(qmrrParams.ContainsKey("causePrior"));
            SpecialFunctions.CheckCondition(qmrrParams.ContainsKey("leakProbability"));
            SpecialFunctions.CheckCondition(qmrrParams.ContainsKey("useKnownList"));
            SpecialFunctions.CheckCondition(!qmrrParams["useKnownList"].DoSearch);
            SpecialFunctions.CheckCondition(qmrrParams["useKnownList"].Value == 1.0);
            foreach (Hla hla in candidateHlaSet)
            {
                string paramName = "link" + hla.ToString();
                SpecialFunctions.CheckCondition(qmrrParams.ContainsKey(paramName));
            }

            LinkPerHla aLinkPerHla = new LinkPerHla();

            return(aLinkPerHla);
        }

Exemple #4

        public static ModelLikelihoodFactories GetInstanceCoverage(OptimizationParameterList qmrrParamsStart, string dataset)
        {
            SpecialFunctions.CheckCondition(qmrrParamsStart.Count == 1);
            SpecialFunctions.CheckCondition(qmrrParamsStart.ContainsKey("useKnownList"));
            SpecialFunctions.CheckCondition(!qmrrParamsStart["useKnownList"].DoSearch);
            SpecialFunctions.CheckCondition(qmrrParamsStart["useKnownList"].Value == 0.0 || qmrrParamsStart["useKnownList"].Value == 1.0);

            Coverage aCoverage = new Coverage();

            return(aCoverage);
        }