new public static ModelEvaluatorDiscreteConditionalCollection GetInstance(string collectionType, ModelScorer scorer)
{
collectionType = collectionType.ToLower();
SpecialFunctions.CheckCondition(collectionType.Equals("onedirection") || collectionType.Equals("bothdirections"), "ModelEvaluatorDiscreteConditionalCollection must be of type \"OneDirection\" or \"BothDirections\"");
List <ModelEvaluator> models = new List <ModelEvaluator>();
models.Add(ModelEvaluatorDiscreteConditional.GetInstance("Attraction", scorer, true));
models.Add(ModelEvaluatorDiscreteConditional.GetInstance("Repulsion", scorer, true));
models.Add(ModelEvaluatorDiscreteConditional.GetInstance("Escape", scorer, true));
models.Add(ModelEvaluatorDiscreteConditional.GetInstance("Reversion", scorer, true));
if (collectionType.Equals("bothdirections"))
{
collectionType = "BothDirections";
models.Add(ModelEvaluatorReverse.GetInstance(ModelEvaluatorDiscreteConditional.GetInstance("Attraction", scorer, true)));
models.Add(ModelEvaluatorReverse.GetInstance(ModelEvaluatorDiscreteConditional.GetInstance("Repulsion", scorer, true)));
models.Add(ModelEvaluatorReverse.GetInstance(ModelEvaluatorDiscreteConditional.GetInstance("Escape", scorer, true)));
models.Add(ModelEvaluatorReverse.GetInstance(ModelEvaluatorDiscreteConditional.GetInstance("Reversion", scorer, true)));
}
else
{
collectionType = "OneDirection";
}
return(new ModelEvaluatorDiscreteConditionalCollection(models, collectionType));
}
new public static ModelEvaluatorDiscrete GetInstance(string nameAndParameters, ModelScorer scorer)
{
nameAndParameters = nameAndParameters.ToLower();
if (nameAndParameters.StartsWith(ModelEvaluatorDiscreteConditional.BaseName.ToLower()))
{
return(ModelEvaluatorDiscreteConditional.GetInstance(nameAndParameters.Substring(ModelEvaluatorDiscreteConditional.BaseName.Length), scorer));
}
else if (nameAndParameters.StartsWith(ModelEvaluatorDiscreteJoint.BaseName.ToLower()))
{
return(ModelEvaluatorDiscreteJoint.GetInstance(nameAndParameters.Substring(ModelEvaluatorDiscreteJoint.BaseName.Length), scorer));
}
else if (nameAndParameters.Equals(ModelEvaluatorDiscreteFisher.BaseName.ToLower()))
{
return(ModelEvaluatorDiscreteFisher.GetInstance(scorer.PhyloTree.LeafCollection));
}
throw new ArgumentException("Cold not parse " + nameAndParameters + " into a ModelEvaluatorDiscrete.");
}
