public static void CheckDirectoryIntegrity(string ciDir, List <DataSourceVersion> mainDataSourceVersions)
{
DataSourceVersion version = null;
if (string.IsNullOrEmpty(ciDir))
{
return;
}
foreach (var ciPath in Directory.GetFiles(ciDir, "*.nci"))
{
using (var reader = new CustomIntervalReader(ciPath))
{
if (version == null)
{
version = reader.DataVersion;
}
else
{
var newVersion = reader.DataVersion;
if (newVersion != version)
{
throw new UserErrorException($"Found more than one custom interval data version represented in the following directory: {ciDir}");
}
}
}
}
if (version != null)
{
mainDataSourceVersions.Add(version);
}
}
private static void AddIntervals(string ciDir, string ucscReferenceName, List <ICustomInterval> intervals)
{
if (string.IsNullOrEmpty(ciDir))
{
return;
}
var ciPath = Path.Combine(ciDir, ucscReferenceName + ".nci");
if (!File.Exists(ciPath))
{
return;
}
using (var reader = new CustomIntervalReader(ciPath))
{
while (true)
{
var interval = reader.GetNextCustomInterval();
if (interval == null)
{
break;
}
intervals.Add(interval);
}
}
}
