private void CopyFromStruct(udtScanHeaderInfoType udtScanHeaderInfoType)
{
MSLevel = udtScanHeaderInfoType.MSLevel;
EventNumber = udtScanHeaderInfoType.EventNumber;
SIMScan = udtScanHeaderInfoType.SIMScan;
MRMScanType = udtScanHeaderInfoType.MRMScanType;
ZoomScan = udtScanHeaderInfoType.ZoomScan;
NumPeaks = udtScanHeaderInfoType.NumPeaks;
RetentionTime = udtScanHeaderInfoType.RetentionTime;
LowMass = udtScanHeaderInfoType.LowMass;
HighMass = udtScanHeaderInfoType.HighMass;
TotalIonCurrent = udtScanHeaderInfoType.TotalIonCurrent;
BasePeakMZ = udtScanHeaderInfoType.BasePeakMZ;
BasePeakIntensity = udtScanHeaderInfoType.BasePeakIntensity;
FilterText = udtScanHeaderInfoType.FilterText;
ParentIonMZ = udtScanHeaderInfoType.ParentIonMZ;
CollisionMode = udtScanHeaderInfoType.CollisionMode;
ActivationType = udtScanHeaderInfoType.ActivationType;
IonMode = udtScanHeaderInfoType.IonMode;
MRMInfo = udtScanHeaderInfoType.MRMInfo;
NumChannels = udtScanHeaderInfoType.NumChannels;
UniformTime = udtScanHeaderInfoType.UniformTime;
Frequency = udtScanHeaderInfoType.Frequency;
IsCentroided = udtScanHeaderInfoType.IsCentroidScan;
StoreScanEvents(udtScanHeaderInfoType.ScanEventNames, udtScanHeaderInfoType.ScanEventValues);
StoreStatusLog(udtScanHeaderInfoType.StatusLogNames, udtScanHeaderInfoType.StatusLogValues);
}
public clsScanInfo(int scan, udtScanHeaderInfoType udtScanHeaderInfo)
: this(scan)
{
CopyFromStruct(udtScanHeaderInfo);
}
private void CopyFromStruct(udtScanHeaderInfoType udtScanHeaderInfoType)
{
MSLevel = udtScanHeaderInfoType.MSLevel;
EventNumber = udtScanHeaderInfoType.EventNumber;
SIMScan = udtScanHeaderInfoType.SIMScan;
MRMScanType = udtScanHeaderInfoType.MRMScanType;
ZoomScan = udtScanHeaderInfoType.ZoomScan;
NumPeaks = udtScanHeaderInfoType.NumPeaks;
RetentionTime = udtScanHeaderInfoType.RetentionTime;
LowMass = udtScanHeaderInfoType.LowMass;
HighMass = udtScanHeaderInfoType.HighMass;
TotalIonCurrent = udtScanHeaderInfoType.TotalIonCurrent;
BasePeakMZ = udtScanHeaderInfoType.BasePeakMZ;
BasePeakIntensity = udtScanHeaderInfoType.BasePeakIntensity;
FilterText = udtScanHeaderInfoType.FilterText;
ParentIonMZ = udtScanHeaderInfoType.ParentIonMZ;
CollisionMode = udtScanHeaderInfoType.CollisionMode;
ActivationType = udtScanHeaderInfoType.ActivationType;
IonMode = udtScanHeaderInfoType.IonMode;
MRMInfo = udtScanHeaderInfoType.MRMInfo;
NumChannels = udtScanHeaderInfoType.NumChannels;
UniformTime = udtScanHeaderInfoType.UniformTime;
Frequency = udtScanHeaderInfoType.Frequency;
IsCentroided = udtScanHeaderInfoType.IsCentroidScan;
StoreScanEvents(udtScanHeaderInfoType.ScanEventNames, udtScanHeaderInfoType.ScanEventValues);
StoreStatusLog(udtScanHeaderInfoType.StatusLogNames, udtScanHeaderInfoType.StatusLogValues);
}
public void TestScanInfoCopyFromStruct(string rawFileName, int scanStart, int scanEnd)
{
var dataFile = GetRawDataFile(rawFileName);
using (var reader = new XRawFileIO(dataFile.FullName))
{
Console.WriteLine("Checking clsScanInfo initializing from a struct using {0}", dataFile.Name);
for (var scanNumber = scanStart; scanNumber <= scanEnd; scanNumber++)
{
clsScanInfo scanInfo;
var success = reader.GetScanInfo(scanNumber, out scanInfo);
Assert.IsTrue(success, "GetScanInfo returned false for scan {0}", scanNumber);
#pragma warning disable 618
var udtScanHeaderInfo = new udtScanHeaderInfoType
{
MSLevel = scanInfo.MSLevel,
EventNumber = scanInfo.EventNumber,
SIMScan = scanInfo.SIMScan,
MRMScanType = scanInfo.MRMScanType,
ZoomScan = scanInfo.ZoomScan,
NumPeaks = scanInfo.NumPeaks,
RetentionTime = scanInfo.RetentionTime,
LowMass = scanInfo.LowMass,
HighMass = scanInfo.HighMass,
TotalIonCurrent = scanInfo.TotalIonCurrent,
BasePeakMZ = scanInfo.BasePeakMZ,
BasePeakIntensity = scanInfo.BasePeakIntensity,
FilterText = scanInfo.FilterText,
ParentIonMZ = scanInfo.ParentIonMZ,
ActivationType = scanInfo.ActivationType,
CollisionMode = scanInfo.CollisionMode,
IonMode = scanInfo.IonMode,
MRMInfo = scanInfo.MRMInfo,
NumChannels = scanInfo.NumChannels,
UniformTime = scanInfo.UniformTime,
Frequency = scanInfo.Frequency,
IsCentroidScan = scanInfo.IsCentroided,
ScanEventNames = new string[scanInfo.ScanEvents.Count],
ScanEventValues = new string[scanInfo.ScanEvents.Count],
StatusLogNames = new string[scanInfo.StatusLog.Count],
StatusLogValues = new string[scanInfo.StatusLog.Count]
};
#pragma warning restore 618
var targetIndex = 0;
foreach (var scanEvent in scanInfo.ScanEvents)
{
udtScanHeaderInfo.ScanEventNames[targetIndex] = scanEvent.Key;
udtScanHeaderInfo.ScanEventValues[targetIndex] = scanEvent.Value;
targetIndex++;
}
targetIndex = 0;
foreach (var scanEvent in scanInfo.StatusLog)
{
udtScanHeaderInfo.StatusLogNames[targetIndex] = scanEvent.Key;
udtScanHeaderInfo.StatusLogValues[targetIndex] = scanEvent.Value;
targetIndex++;
}
#pragma warning disable 618
var scanInfoFromStruct = new clsScanInfo(scanInfo.ScanNumber, udtScanHeaderInfo);
#pragma warning restore 618
Assert.AreEqual(scanInfoFromStruct.MSLevel, scanInfo.MSLevel);
Assert.AreEqual(scanInfoFromStruct.IsCentroided, scanInfo.IsCentroided);
Assert.AreEqual(scanInfoFromStruct.FilterText, scanInfo.FilterText);
Assert.AreEqual(scanInfoFromStruct.BasePeakIntensity, scanInfo.BasePeakIntensity, 0.0001);
Assert.AreEqual(scanInfoFromStruct.TotalIonCurrent, scanInfo.TotalIonCurrent, 0.0001);
}
}
}
public clsScanInfo(int scan, udtScanHeaderInfoType udtScanHeaderInfo) : this(scan)
{
CopyFromStruct(udtScanHeaderInfo);
}
private udtScanHeaderInfoType ScanInfoClassToStruct(clsScanInfo scanInfo)
{
var udtScanInfo = new udtScanHeaderInfoType
{
MSLevel = scanInfo.MSLevel,
EventNumber = scanInfo.EventNumber,
SIMScan = scanInfo.SIMScan,
MRMScanType = scanInfo.MRMScanType,
ZoomScan = scanInfo.ZoomScan,
NumPeaks = scanInfo.NumPeaks,
RetentionTime = scanInfo.RetentionTime,
LowMass = scanInfo.LowMass,
HighMass = scanInfo.HighMass,
TotalIonCurrent = scanInfo.TotalIonCurrent,
BasePeakMZ = scanInfo.BasePeakMZ,
BasePeakIntensity = scanInfo.BasePeakIntensity,
FilterText = scanInfo.FilterText,
ParentIonMZ = scanInfo.ParentIonMZ,
ActivationType = scanInfo.ActivationType,
CollisionMode = scanInfo.CollisionMode,
IonMode = scanInfo.IonMode,
MRMInfo = scanInfo.MRMInfo,
NumChannels = scanInfo.NumChannels,
UniformTime = scanInfo.UniformTime,
Frequency = scanInfo.Frequency,
IsCentroidScan = scanInfo.IsCentroided,
ScanEventNames = new string[scanInfo.ScanEvents.Count],
ScanEventValues = new string[scanInfo.ScanEvents.Count]
};
for (var i = 0; i < scanInfo.ScanEvents.Count; i++)
{
udtScanInfo.ScanEventNames[i] = scanInfo.ScanEvents[i].Key;
udtScanInfo.ScanEventValues[i] = scanInfo.ScanEvents[i].Value;
}
udtScanInfo.StatusLogNames = new string[scanInfo.StatusLog.Count];
udtScanInfo.StatusLogValues = new string[scanInfo.StatusLog.Count];
for (var i = 0; i < scanInfo.StatusLog.Count; i++)
{
udtScanInfo.StatusLogNames[i] = scanInfo.StatusLog[i].Key;
udtScanInfo.StatusLogValues[i] = scanInfo.StatusLog[i].Value;
}
return udtScanInfo;
}
public bool GetScanInfo(int scan, out udtScanHeaderInfoType udtScanInfo)
{
clsScanInfo scanInfo;
var success = GetScanInfo(scan, out scanInfo);
if (success)
{
udtScanInfo = ScanInfoClassToStruct(scanInfo);
}
else
{
udtScanInfo = new udtScanHeaderInfoType();
}
return success;
}
public int GetScanData2D(int scan, out double[,] massIntensityPairs, ref udtScanHeaderInfoType udtScanInfo, int maxNumberOfPeaks)
{
return GetScanData2D(scan, out massIntensityPairs, maxNumberOfPeaks, centroidData: false);
}
public int GetScanData(int scan, out double[] mzList, out double[] intensityList, out udtScanHeaderInfoType udtScanInfo, int intMaxNumberOfPeaks, bool centroidData)
{
udtScanInfo = new udtScanHeaderInfoType();
return GetScanData(scan, out mzList, out intensityList, intMaxNumberOfPeaks, centroidData);
}
public int GetScanData(int scan, out double[] mzList, out double[] intensityList, ref udtScanHeaderInfoType udtScanInfo, bool centroidData)
{
const int intMaxNumberOfPeaks = 0;
return GetScanData(scan, out mzList, out intensityList, intMaxNumberOfPeaks, centroidData);
}
