private void Condense_Click(object sender, RoutedEventArgs e)
{
Microsoft.Win32.OpenFileDialog ofd = new Microsoft.Win32.OpenFileDialog();
ofd.Title = "Open Newick file with tree.";
ofd.Filter = "Newick file|*.nwk|all files|*.*";
if (!(bool)ofd.ShowDialog())
{
return;
}
string treeString = System.IO.File.ReadAllText(ofd.FileName);
Tree <string> tree = new Tree <string>(treeString);
double theta = double.Parse(rootNameBox.Text);
Tree <int> newTree = TestFunctions.CondenseTree(tree, theta);
int first = 1;
Tree <int> .NumberIntermediates(newTree, ref first, "I");
concateNamesAndContents(newTree);
treeString = newTree.GetDescriptor();
System.IO.File.WriteAllText("condensed.nwk", treeString);
MessageBox.Text += "Done.\n";
}
private void reroot_Click(object sender, RoutedEventArgs e)
{
//Microsoft.Win32.OpenFileDialog ofd = new Microsoft.Win32.OpenFileDialog();
//ofd.Title = "Open Newick file with tree.";
//ofd.Filter = "Newick file|*.nwk|all files|*.*";
//if (!(bool)ofd.ShowDialog())
// return;
//string treeString = System.IO.File.ReadAllText(ofd.FileName);
string treeString = "(c5970S1V11:0.03073,(MRCA:0.00006,c8136S1V8:0.00249):0.00250,c8756S1V5:0.02533)";
Tree <string> tree = new Tree <string>(treeString);
// tree = TestFunctions.RerootTree(tree, rootNameBox.Text);
tree = TestFunctions.RerootTree(tree, "MRCA");
treeString = tree.GetDescriptor();
System.IO.File.WriteAllText("rerooted.nwk", treeString);
MessageBox.Text += "Done.\n";
}