internal void OnCreatingSeg()
{
_selectedSeg.OnCreatingSeg();
// Refreshes seg name in WPF control
var selectedSeg = SelectedSeg;
SelectedSeg = null;
OnPropertyChanged("SelectedSeg");
SelectedSeg = selectedSeg;
OnPropertyChanged("SelectedSeg");
}
public static void CreateSeriesGraphicsForSeg(IPresentationImage presentationImage, Seg seg,
SegmentationDocument segmentationDocument,
IDicomMessageSopDataSource dicomMessageSopDataSourceSop)
{
Platform.CheckForNullReference(presentationImage, "presentationImage");
Platform.CheckForNullReference(seg, "seg");
Platform.CheckForNullReference(segmentationDocument, "segmentationDocument");
SegmentImageData segImageData = seg.SegmentImageData;
if (segImageData == null)
{
Platform.Log(LogLevel.Error,
"Cannot create segmentation graphics when no segmentation imaging data is provided");
return;
}
var imageSopProvider = presentationImage as IImageSopProvider;
if (imageSopProvider == null)
{
Platform.Log(LogLevel.Error,
"Failed to populate SegFrameGraphics collection. Image is not an ImageSopProvider");
return;
}
DicomPixelData segmentationPixelData = DicomPixelData.CreateFrom(dicomMessageSopDataSourceSop.SourceMessage);
var rawPixelData =
(byte[]) dicomMessageSopDataSourceSop.SourceMessage.DataSet.GetAttribute(DicomTags.PixelData).Values;
var pixelDataGetter = new Func<int, byte[]>(frameIndex =>
{
if (segImageData.BitsStored == 1)
{
// Do unpacking
int frameLength = segImageData.Rows*
segImageData.Columns;
var overlayData =
new OverlayData(frameIndex*frameLength,
segImageData.Rows,
segImageData.Columns, false,
rawPixelData);
return overlayData.Unpack();
}
if (segImageData.BitsStored == 8)
{
return segmentationPixelData.GetFrame(frameIndex);
}
throw new InvalidDataException(
"Segmentation objects need to have BitsStored as either 1 or 8");
});
// NOTE: SegmentFrameData was already sorted
foreach (SegmentFrameData segmentFrameData in segImageData.SegmentFrameData)
{
IPresentationImage segPresentationImage = null;
// Get the presentation image if we have an image reference
string referencedSopInstanceUid = segmentFrameData.ReferencedSopInstanceUid;
int referencedImageFrameNumber = segmentFrameData.ReferencedFrameNumber ?? 1;
if (!string.IsNullOrEmpty(referencedSopInstanceUid))
{
segPresentationImage =
presentationImage.ParentDisplaySet.PresentationImages.OfType<IImageSopProvider>()
.FirstOrDefault(curImageSopProvider => curImageSopProvider != null &&
curImageSopProvider.ImageSop.SopInstanceUid ==
referencedSopInstanceUid &&
curImageSopProvider.Frame.FrameNumber ==
referencedImageFrameNumber) as IPresentationImage;
}
// Location defaults to 0, 0 unless determined otherwise from image position and image orientation
var segLocation = new PointF();
// Get the presentation image from the image position and orientation
if (segmentFrameData.ImagePositionPatient != null &&
segmentFrameData.ImagePositionPatient.Count() > 2 &&
segmentFrameData.ImageOrientationPatient != null &&
segmentFrameData.ImageOrientationPatient.Count() > 5)
{
var imagePositionPatient = new ImagePositionPatient(
segmentFrameData.ImagePositionPatient[0],
segmentFrameData.ImagePositionPatient[1],
segmentFrameData.ImagePositionPatient[2]);
var imageOrientationPatient = new ImageOrientationPatient(
segmentFrameData.ImageOrientationPatient[0],
segmentFrameData.ImageOrientationPatient[1],
segmentFrameData.ImageOrientationPatient[2],
segmentFrameData.ImageOrientationPatient[3],
segmentFrameData.ImageOrientationPatient[4],
segmentFrameData.ImageOrientationPatient[5]);
IDisplaySet displaySet = presentationImage.ParentDisplaySet;
if (segPresentationImage == null)
{
segPresentationImage = PresentationImageFromPositionOrientation(
imagePositionPatient,
imageOrientationPatient,
displaySet,
segImageData.FrameOfReferenceUid);
}
var imageSop = segPresentationImage as IImageSopProvider;
if (imageSop != null)
{
Vector3D segImageLocation =
imageSop.Frame.ImagePlaneHelper.ConvertToImagePlane(new Vector3D(
(float) imagePositionPatient.X,
(float) imagePositionPatient.Y,
(float) imagePositionPatient.Z));
PointF? segPixelLocation =
imageSop.Frame.ImagePlaneHelper.ConvertToImage(
new PointF(segImageLocation.X, segImageLocation.Y));
if (segPixelLocation.HasValue)
segLocation = segPixelLocation.Value;
}
}
if (segPresentationImage != null)
{
SegFrameImageGraphic newGraphic = AddSegFrameImageGraphicToPresentationImage(
segPresentationImage,
segImageData.Rows,
segImageData.Columns,
segLocation.X,
segLocation.Y,
seg.Color,
referencedImageFrameNumber,
seg.Label,
seg.Description,
pixelDataGetter.Invoke(segmentFrameData.FrameNumber - 1),
new SegmentationDocumentReference(segmentationDocument, seg.SegmentationNumber));
if (newGraphic != null &&
segPresentationImage == segPresentationImage.ParentDisplaySet.ImageBox.TopLeftPresentationImage)
{
newGraphic.Draw();
}
}
else
{
Platform.Log(LogLevel.Error, "Failed to find Presentation Image to display a segment on");
}
}
}
private SegmentationMenuInfo MenuInfoFromDocumentAndSeg(SegmentationDocument segmentationDocument, Seg seg, Sop sop)
{
if (seg.SegmentImageData != null &&
seg.SegmentImageData.SegmentFrameData != null &&
seg.SegmentImageData.SegmentFrameData.Count > 0)
{
return new SegmentationMenuInfo
{
DisplayLabel = seg.DisplayLabel,
DisplayImageSeriesUid = seg.ImageSeriesUid,
SegmentationNumber = seg.SegmentationNumber,
SegmentationDocumentUid = segmentationDocument.SopInstanceUid,
SeriesNumber = segmentationDocument.SeriesNumber,
ImagePositionPatient = seg.SegmentImageData.SegmentFrameData[0].ImagePositionPatient,
ImageOrientationPatient =
seg.SegmentImageData.SegmentFrameData[0].ImageOrientationPatient,
FrameOfReferenceUid = seg.SegmentImageData.FrameOfReferenceUid,
PatientId = sop.PatientId,
PatientsName = sop.PatientsName,
StudyAccessionNumber = sop.AccessionNumber,
StudyDate = sop.StudyDate,
StudyTime = sop.StudyTime,
StudyDescription = sop.StudyDescription,
StudyInstanceUid = sop.StudyInstanceUid
};
}
return null;
}
private void AddSegmentationMenuInfo(SegmentationDocument segmentationDocument, Seg seg, Sop sop)
{
if (
!_segmentationMenuInfos.ContainsKey(
segmentationDocument.SopInstanceUid + seg.SegmentationNumber))
{
SegmentationMenuInfo info =
MenuInfoFromDocumentAndSeg(segmentationDocument, seg, sop);
if (info != null)
_segmentationMenuInfos.Add(
segmentationDocument.SopInstanceUid + seg.SegmentationNumber,
info);
}
}
internal static IEnumerable<SegFrameImageGraphic> GetSegmentationImageGraphicsFromSeg(IImageViewer imageViewer,
Seg seg)
{
var segGraphics = new List<SegFrameImageGraphic>();
foreach (IImageBox imageBox in imageViewer.PhysicalWorkspace.ImageBoxes)
{
if (imageBox != null && imageBox.DisplaySet != null)
{
foreach (IPresentationImage presentationImage in imageBox.DisplaySet.PresentationImages)
{
var graphicsProvider = presentationImage as IOverlayGraphicsProvider;
if (graphicsProvider != null)
{
segGraphics.AddRange(graphicsProvider.OverlayGraphics.OfType<SegFrameImageGraphic>().Where(
segGraphic =>
segGraphic.SegmentationDocumentReference.SegmentationDocument.Segs.Contains(seg)).Where(
segGraphic =>
segGraphic.SegmentationDocumentReference.SegmentNumber == seg.SegmentationNumber));
}
}
}
}
return segGraphics;
}
internal static IEnumerable<ISegGraphic> GetAllSegmentationGraphicsFromSeg(IImageViewer imageViewer, Seg seg)
{
var graphics = new List<ISegGraphic>();
graphics.AddRange(seg.SegGraphics);
graphics.AddRange(GetSegmentationImageGraphicsFromSeg(imageViewer, seg));
return graphics;
}
