/// <summary>
/// Convenience method for obtaining a PGF/TikZ
/// document. Returns a string of PGF/TikZ that
/// draws a specified set of rendering information
/// in the SBML file of the path passed. The
/// rendering may be replaced with SBGN default.
/// </summary>
/// <param name="filename">string indicating
/// path of the SBML file</param>
/// <param name="selectedLayoutNum">int indicating
/// which set of rendering information to use</param>
/// <param name="useSBGN">boolean indicating
/// whether the layout should be replaced by
/// SBGN default</param>
/// <returns></returns>
public static string ToTex(string filename, int selectedLayoutNum, Boolean useSBGN)
{
var conv = new Converter();
conv.ReadFromSBML(filename, useSBGN);
return(conv.WriteFromLayout(selectedLayoutNum));
}
static void Main(string[] args)
{
//if (args.Length < 1 || args.Length > 2)
//{
// Console.WriteLine("Pass one or two arguments; the name of the SBML file and optionally, the output .tex file name");
// Environment.Exit(-1);
//}
//string fileName = args[0];
//Converter conv = new Converter(fileName);
//string outputFileName;
//if (args.Length == 1)
//{
// outputFileName = Path.Combine(Path.GetDirectoryName(fileName), Path.GetFileNameWithoutExtension(fileName) + ".tex");
//}
//else
//{
// outputFileName = args[1];
//}
//using (StreamWriter writer = new StreamWriter(outputFileName))
//{
// writer.WriteLine(conv.WriteFromLayout());
//}
//string fileName = "C:\\Users\\Si Yuan\\Desktop\\testcases\\CaMK-Activation.xml";
string fileName = @"C:\Users\Si yuan\Documents\SBML Models\linear1.xml"; ;
//string curDir = Directory.GetCurrentDirectory();
//string fontdatafile = curDir + "\\Fonts.txt";
Converter conv = new Converter(fileName, false);
string outputFileName = @"C:\Users\Si yuan\Desktop\test.tex";
using (StreamWriter writer = new StreamWriter(outputFileName))
{
writer.WriteLine(conv.WriteFromLayout());
}
//File.WriteAllBytes(outputFileName, conv.ToPDF());
}
/// <summary>
/// Convenience method for obtaining a PGF/TikZ
/// document. Returns a string of PGF/TikZ that
/// draws the first set of rendering information
/// in the SBML file of the path passed.
/// </summary>
/// <param name="filename">string indicating path
/// of the SBML file</param>
/// <returns>string of PGF/TikZ commands</returns>
public static string ToTex(string filename)
{
var conv = new Converter(filename);
return(conv.WriteFromLayout());
}
/// <summary>
/// Convenience method for obtaining a PGF/TikZ
/// document. Returns a string of PGF/TikZ that
/// draws a specified set of rendering information
/// in the SBML file of the path passed. The
/// rendering may be replaced with SBGN default.
/// </summary>
/// <param name="filename">string indicating
/// path of the SBML file</param>
/// <param name="selectedLayoutNum">int indicating
/// which set of rendering information to use</param>
/// <param name="useSBGN">boolean indicating
/// whether the layout should be replaced by
/// SBGN default</param>
/// <returns></returns>
public static string ToTex(string filename, int selectedLayoutNum, Boolean useSBGN)
{
var conv = new Converter();
conv.ReadFromSBML(filename, useSBGN);
return conv.WriteFromLayout(selectedLayoutNum);
}
/// <summary>
/// Convenience method for obtaining a PGF/TikZ
/// document. Returns a string of PGF/TikZ that
/// draws the first set of rendering information
/// in the SBML file of the path passed.
/// </summary>
/// <param name="filename">string indicating path
/// of the SBML file</param>
/// <returns>string of PGF/TikZ commands</returns>
public static string ToTex(string filename)
{
var conv = new Converter(filename);
return conv.WriteFromLayout();
}
