public SrmCompoundModeForm()
{
InitializeComponent();
this.peptideGraph = new ZedGraphMRMPeptideItemScans(zgcPeptide, this.CreateGraphics());
this.rtGraph = new ZedGraphMRMPeptideItemRetentionTimes(zgcRetentionTime);
this.ViewOption = new SrmViewOption();
}
public SrmFileModeForm()
{
InitializeComponent();
PeptideItemUpdate += UpdatePeptide;
PeptideItemUpdate += new ZedGraphMRMPeptideItemScans(zgcPeptide, this.CreateGraphics()).Update;
ProductIonUpdate += new ZedGraphMRMProductIonScansAndRegression(zgcTransaction, this.CreateGraphics()).Update;
ViewOption = new SrmViewOption();
}
private CompoundItemFilter GetInvalidFilter()
{
SrmViewOption option = new SrmViewOption()
{
ViewDecoy = cbViewDecoy.Checked,
ViewValidOnly = cbViewValidOnly.Checked
};
return(option.GetRejectCompoundFilter());
}
public SrmValidatorUI()
{
InitializeComponent();
this.Text = Constants.GetSQHTitle(title, version);
this.viewOption = new SrmViewOption();
FileModePeptideItemUpdate += new ZedGraphMRMPeptideItemScans(zgcFileModePeptide, this.CreateGraphics()).Update;
FileModePeptideItemUpdate += new ZedGraphSrmPeptideItem(zgcAllInOne).Update;
FileModeProductIonUpdate += new ZedGraphMRMProductIonScansAndRegression(zgcFileModeTransaction, this.CreateGraphics()).Update;
CompoundModePeptideItemUpdate += new ZedGraphMRMPeptideItemScans(zgcCompoundModePeptide, this.CreateGraphics()).Update;
CompoundModePeptideItemUpdate += new ZedGraphMRMPeptideItemRetentionTimes(zgcRetentionTime).Update;
btnFileMode.PerformClick();
}
public static TransitionItemFilter GetRejectTransitionFilter(this SrmViewOption option)
{
TransitionItemFilter result = null;
if (!option.ViewDecoy)
{
result += new TransitionItemFilter(TransitionItemUtils.IsDecoy);
}
if (option.ViewValidOnly)
{
result += new TransitionItemFilter(TransitionItemUtils.IsInvalid);
}
if (result == null)
{
result += new TransitionItemFilter(TransitionItemUtils.AlwaysFalse);
}
return(result);
}
public static CompoundItemFilter GetRejectCompoundFilter(this SrmViewOption option)
{
CompoundItemFilter result = null;
if (!option.ViewDecoy)
{
result += new CompoundItemFilter(CompoundItemUtils.IsDecoy);
}
if (option.ViewValidOnly)
{
result += new CompoundItemFilter(CompoundItemUtils.IsInvalid);
}
if (result == null)
{
result += new CompoundItemFilter(CompoundItemUtils.AlwaysFalse);
}
return(result);
}
public UpdateMRMPairedPeptideItemEventArgs(SrmPairedPeptideItem item, SrmViewOption viewOption)
: base()
{
this.Item = item;
this.ViewOption = viewOption;
}
public UpdateMRMPairedProductIonEventArgs(SrmPairedProductIon item, SrmViewOption viewOption)
: base()
{
this.Item = item;
this.ViewOption = viewOption;
}