public override IsobaricResult ReadFromFile(string fileName)
{
IsobaricResult result = new IsobaricResult()
{
Mode = ITraqResultXmlFormatReader.GetMode(fileName)
};
var reader = new ITraqResultXmlFormatReader()
{
Progress = this.Progress,
Accept = this.Accept,
ReadPeaks = this.ReadPeaks
};
reader.OpenFile(fileName);
try
{
IsobaricItem item;
while (null != (item = reader.Next()))
{
result.Add(item);
}
}
finally
{
reader.Close();
}
return(result);
}
public static String GetMode(string fileName)
{
using (var reader = new ITraqResultXmlFormatReader())
{
reader.OpenFile(fileName);
while (reader._reader.MoveToElement("ITraqResult"))
{
if (reader._reader.HasAttributes)
{
return(reader._reader.GetAttribute("Mode"));
}
}
}
return(string.Empty);
}
public void RunFormat(IITraqResultFileFormat format)
{
Setup();
var tmpFilename = @TestContext.CurrentContext.TestDirectory + "/../../../data//temp.xml";
format.WriteToFile(tmpFilename, tr);
FileAssert.AreEqual(@TestContext.CurrentContext.TestDirectory + "/../../../data//ITraqResult.xml", tmpFilename);
var newtr = format.ReadFromFile(tmpFilename);
CheckExtension.CheckEquals(tr, newtr);
format.ReadPeaks = false;
var newstr2 = format.ReadFromFile(tmpFilename);
Assert.IsEmpty(newstr2[0].RawPeaks);
Assert.IsEmpty(newstr2[0].PeakInIsolationWindow);
Assert.IsEmpty(newstr2[1].RawPeaks);
Assert.IsEmpty(newstr2[1].PeakInIsolationWindow);
format.Accept = (m => 355 == m.Scan.Scan);
var newstr3 = format.ReadFromFile(tmpFilename);
Assert.AreEqual(1, newstr3.Count);
Assert.AreEqual(355, newstr3[0].Scan.Scan);
var lines = File.ReadAllText(tmpFilename);
ITraqResultXmlFormatReader reader = new ITraqResultXmlFormatReader();
reader.OpenByContent(lines);
var item = reader.Next();
CheckExtension.CheckEquals(tr[0], item);
item = reader.Next();
CheckExtension.CheckEquals(tr[1], item);
File.Delete(tmpFilename);
if (File.Exists(tmpFilename + ".index"))
{
File.Delete(tmpFilename + ".index");
}
}
