public void TestMatchStart()
{
Sequence seq = new Sequence(AlphabetType.DNA, "atgcatgc");
Series series = new SeriesBest("test", 1.0);
series.Add(new Constraint("test", "START", +1));
series.Add(new Motif("motif", AlphabetType.DNA, "nnnn", 0.0));
Match match = series.Match(seq, 2);
Assert.AreEqual("tgca", match.Letters());
match = series.Match(seq, 1);
Assert.AreEqual(null, match);
match = seq.SearchBest(0, 0, series);
Assert.AreEqual("tgca", match.Letters());
}
public void TestMatchCenter()
{
Sequence seq = new Sequence(AlphabetType.DNA, "atgcatg");
Series series = new SeriesBest("test", 1.0);
series.Add(new Constraint("test", "CENTER", -1));
series.Add(new Motif("motif", AlphabetType.DNA, "nnnn", 1.0));
Match match = series.Match(seq, 3);
Assert.AreEqual("gcat", match.Letters());
match = series.Match(seq, 2);
Assert.AreEqual(null, match);
match = series.Match(seq, 4);
Assert.AreEqual(null, match);
match = seq.SearchBest(0, 0, series);
Assert.AreEqual("gcat", match.Letters());
}
